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Class: MaterialEntity

Physical entity that is an input our output of a process from a Subject

URI: cmdr:MaterialEntity

classDiagram class MaterialEntity click MaterialEntity href "../MaterialEntity" MaterialEntity : concentration MaterialEntity --> "0..1" Quantity : concentration click Quantity href "../Quantity" MaterialEntity : id MaterialEntity : name MaterialEntity : source MaterialEntity --> "0..1" Subject : source click Subject href "../Subject" MaterialEntity : used_in MaterialEntity --> "*" Investigation : used_in click Investigation href "../Investigation" MaterialEntity : volume MaterialEntity --> "0..1" Quantity : volume click Quantity href "../Quantity"

Slots

Name Cardinality and Range Description Inheritance
id 1
Uriorcurie		 direct
name 0..1
String		 direct
used_in *
Investigation		 direct
source 0..1
Subject		 direct
volume 0..1
Quantity		 direct
concentration 0..1
Quantity		 direct

Usages

used by used in type used
Container materials range MaterialEntity
MaterialProcessing has_input range MaterialEntity
MaterialProcessing has_output range MaterialEntity
SpecimenCollectionProcess has_output range MaterialEntity

Aliases

  • Substance
  • Specimen
  • Sample
  • Biospecimen
  • Biosample

See Also

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/linkml/cmdr

Mappings

Mapping Type Mapped Value
self cmdr:MaterialEntity
native cmdr:MaterialEntity

LinkML Source

Direct

name: MaterialEntity
description: Physical entity that is an input our output of a process from a Subject
from_schema: https://w3id.org/linkml/cmdr
see_also:
- include:Biospecimen
aliases:
- Substance
- Specimen
- Sample
- Biospecimen
- Biosample
slots:
- id
- name
- used_in
- source
- volume
- concentration
slot_usage:
  concentration:
    name: concentration
    domain_of:
    - MaterialEntity
    range: Quantity
  id:
    name: id
    identifier: true
    domain_of:
    - Investigation
    - MaterialEntity
    - Participation
    - Process
    - Subject
    range: uriorcurie
  source:
    name: source
    comments:
    - this is a shortcut. to be expanded later.
    domain_of:
    - MaterialEntity
    range: Subject
  used_in:
    name: used_in
    domain_of:
    - MaterialEntity
    range: Investigation
    multivalued: true
  volume:
    name: volume
    domain_of:
    - MaterialEntity
    range: Quantity

Induced

name: MaterialEntity
description: Physical entity that is an input our output of a process from a Subject
from_schema: https://w3id.org/linkml/cmdr
see_also:
- include:Biospecimen
aliases:
- Substance
- Specimen
- Sample
- Biospecimen
- Biosample
slot_usage:
  concentration:
    name: concentration
    domain_of:
    - MaterialEntity
    range: Quantity
  id:
    name: id
    identifier: true
    domain_of:
    - Investigation
    - MaterialEntity
    - Participation
    - Process
    - Subject
    range: uriorcurie
  source:
    name: source
    comments:
    - this is a shortcut. to be expanded later.
    domain_of:
    - MaterialEntity
    range: Subject
  used_in:
    name: used_in
    domain_of:
    - MaterialEntity
    range: Investigation
    multivalued: true
  volume:
    name: volume
    domain_of:
    - MaterialEntity
    range: Quantity
attributes:
  id:
    name: id
    from_schema: https://w3id.org/linkml/cmdr
    rank: 1000
    identifier: true
    alias: id
    owner: MaterialEntity
    domain_of:
    - Investigation
    - MaterialEntity
    - Participation
    - Process
    - Subject
    range: uriorcurie
  name:
    name: name
    from_schema: https://w3id.org/linkml/cmdr
    rank: 1000
    alias: name
    owner: MaterialEntity
    domain_of:
    - Investigation
    - MaterialEntity
    - Participation
    - Process
    - Subject
    range: string
  used_in:
    name: used_in
    from_schema: https://w3id.org/linkml/cmdr
    rank: 1000
    alias: used_in
    owner: MaterialEntity
    domain_of:
    - MaterialEntity
    range: Investigation
    multivalued: true
  source:
    name: source
    comments:
    - this is a shortcut. to be expanded later.
    from_schema: https://w3id.org/linkml/cmdr
    rank: 1000
    alias: source
    owner: MaterialEntity
    domain_of:
    - MaterialEntity
    range: Subject
  volume:
    name: volume
    from_schema: https://w3id.org/linkml/cmdr
    rank: 1000
    alias: volume
    owner: MaterialEntity
    domain_of:
    - MaterialEntity
    range: Quantity
  concentration:
    name: concentration
    from_schema: https://w3id.org/linkml/cmdr
    rank: 1000
    alias: concentration
    owner: MaterialEntity
    domain_of:
    - MaterialEntity
    range: Quantity