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Class: IndividualOrganism

URI: linkml_common:IndividualOrganism

classDiagram class IndividualOrganism click IndividualOrganism href "../IndividualOrganism" PhysicalEntity <|-- IndividualOrganism click PhysicalEntity href "../PhysicalEntity" IndividualOrganism <|-- Person click Person href "../Person" IndividualOrganism <|-- VeterinaryAnimal click VeterinaryAnimal href "../VeterinaryAnimal" IndividualOrganism : classification IndividualOrganism --> "0..1" Concept : classification click Concept href "../Concept" IndividualOrganism : description IndividualOrganism : id IndividualOrganism : name IndividualOrganism : ontology_types IndividualOrganism --> "*" Concept : ontology_types click Concept href "../Concept" IndividualOrganism : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
classification 0..1
Concept		 A precise classification of the thing, using a concept from an ontology, cont... PhysicalEntity
ontology_types *
Concept		 A collection of concepts that help to classify the thing, using concepts from... PhysicalEntity
description 0..1
String		 A human-readable description for a thing PhysicalEntity
id 1
Uriorcurie		 A unique identifier for a thing Identified
name 0..1
String		 A human-readable name for a thing Identified
type 0..1
String		 A type for a thing Typed

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/linkml/linkml-common

Mappings

Mapping Type Mapped Value
self linkml_common:IndividualOrganism
native linkml_common:IndividualOrganism

LinkML Source

Direct

name: IndividualOrganism
from_schema: https://w3id.org/linkml/linkml-common
is_a: PhysicalEntity
slot_usage:
  classification:
    name: classification
    annotations:
      recommended_value_set_bindings:
        tag: recommended_value_set_bindings
        value: linkml_common:OrganismTaxonEnum
    domain_of:
    - PhysicalEntity

Induced

name: IndividualOrganism
from_schema: https://w3id.org/linkml/linkml-common
is_a: PhysicalEntity
slot_usage:
  classification:
    name: classification
    annotations:
      recommended_value_set_bindings:
        tag: recommended_value_set_bindings
        value: linkml_common:OrganismTaxonEnum
    domain_of:
    - PhysicalEntity
attributes:
  classification:
    name: classification
    annotations:
      recommended_value_set_bindings:
        tag: recommended_value_set_bindings
        value: linkml_common:OrganismTaxonEnum
    description: A precise classification of the thing, using a concept from an ontology,
      controlled vocabulary, thesaurus, or taxonomy. Some schema classes may choose
      to restrict the range of values which this slot can take, using `values_from`,
      or bindings.
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: classification
    owner: IndividualOrganism
    domain_of:
    - PhysicalEntity
    range: Concept
  ontology_types:
    name: ontology_types
    description: A collection of concepts that help to classify the thing, using concepts
      from an ontolology,  thesaurus, or taxonomy.
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: ontology_types
    owner: IndividualOrganism
    domain_of:
    - PhysicalEntity
    range: Concept
    multivalued: true
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: IndividualOrganism
    domain_of:
    - PhysicalEntity
    - TimePoint
    range: string
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: IndividualOrganism
    domain_of:
    - Identified
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/linkml/linkml-common
    exact_mappings:
    - rdfs:label
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: IndividualOrganism
    domain_of:
    - Identified
    range: string
  type:
    name: type
    description: A type for a thing. The range of this should be a class within the
      schema. It is intended for schema-based classification. Anything beneath the
      shoreline of the schema should use `classification`.
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    designates_type: true
    alias: type
    owner: IndividualOrganism
    domain_of:
    - Typed
    range: string