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Class: SampleCollectionProcess

URI: linkml_common:SampleCollectionProcess

classDiagram class SampleCollectionProcess click SampleCollectionProcess href "../SampleCollectionProcess" InvestigativeProcess <|-- SampleCollectionProcess click InvestigativeProcess href "../InvestigativeProcess" SampleCollectionProcess : collected_from SampleCollectionProcess --> "0..1" PhysicalEntity : collected_from click PhysicalEntity href "../PhysicalEntity" SampleCollectionProcess : ends_at SampleCollectionProcess --> "0..1" TimePoint : ends_at click TimePoint href "../TimePoint" SampleCollectionProcess : follows_procedure SampleCollectionProcess --> "0..1" InvestigativeProtocol : follows_procedure click InvestigativeProtocol href "../InvestigativeProtocol" SampleCollectionProcess : happens_at SampleCollectionProcess --> "0..1" TimePoint : happens_at click TimePoint href "../TimePoint" SampleCollectionProcess : has_duration SampleCollectionProcess --> "0..1" Duration : has_duration click Duration href "../Duration" SampleCollectionProcess : has_interval SampleCollectionProcess --> "0..1" TemporalInterval : has_interval click TemporalInterval href "../TemporalInterval" SampleCollectionProcess : id SampleCollectionProcess : is_ongoing_as_of SampleCollectionProcess --> "0..1" TimePoint : is_ongoing_as_of click TimePoint href "../TimePoint" SampleCollectionProcess : material_collected SampleCollectionProcess --> "0..1" SampleMaterial : material_collected click SampleMaterial href "../SampleMaterial" SampleCollectionProcess : name SampleCollectionProcess : part_of SampleCollectionProcess --> "0..1" Investigation : part_of click Investigation href "../Investigation" SampleCollectionProcess : starts_at SampleCollectionProcess --> "0..1" TimePoint : starts_at click TimePoint href "../TimePoint" SampleCollectionProcess : type SampleCollectionProcess : uses_configuration SampleCollectionProcess --> "0..1" PlannedProcessConfiguration : uses_configuration click PlannedProcessConfiguration href "../PlannedProcessConfiguration" SampleCollectionProcess : uses_physical_device SampleCollectionProcess --> "0..1" PhysicalDevice : uses_physical_device click PhysicalDevice href "../PhysicalDevice"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
material_collected 0..1
SampleMaterial		 direct
collected_from 0..1
PhysicalEntity		 direct
follows_procedure 0..1
InvestigativeProtocol		 PlannedProcess, InvestigativeProcess
part_of 0..1
Investigation		 InvestigativeProcess
uses_physical_device 0..1
PhysicalDevice		 PlannedProcess
uses_configuration 0..1
PlannedProcessConfiguration		 PlannedProcess
starts_at 0..1
TimePoint		 Event
ends_at 0..1
TimePoint		 Event
happens_at 0..1
TimePoint		 Event
has_interval 0..1
TemporalInterval		 Event
has_duration 0..1
Duration		 Event
is_ongoing_as_of 0..1
TimePoint		 Event
id 1
Uriorcurie		 A unique identifier for a thing Identified
name 0..1
String		 A human-readable name for a thing Identified
type 0..1
String		 A type for a thing Typed

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/linkml/linkml-common

Mappings

Mapping Type Mapped Value
self linkml_common:SampleCollectionProcess
native linkml_common:SampleCollectionProcess
exact nmdcschema:CollectingBiosamplesFromSite

LinkML Source

Direct

name: SampleCollectionProcess
from_schema: https://w3id.org/linkml/linkml-common
exact_mappings:
- nmdcschema:CollectingBiosamplesFromSite
is_a: InvestigativeProcess
attributes:
  material_collected:
    name: material_collected
    from_schema: https://w3id.org/linkml-common/investigations
    rank: 1000
    domain_of:
    - SampleCollectionProcess
    range: SampleMaterial
  collected_from:
    name: collected_from
    from_schema: https://w3id.org/linkml-common/investigations
    rank: 1000
    domain_of:
    - SampleCollectionProcess
    range: PhysicalEntity

Induced

name: SampleCollectionProcess
from_schema: https://w3id.org/linkml/linkml-common
exact_mappings:
- nmdcschema:CollectingBiosamplesFromSite
is_a: InvestigativeProcess
attributes:
  material_collected:
    name: material_collected
    from_schema: https://w3id.org/linkml-common/investigations
    rank: 1000
    alias: material_collected
    owner: SampleCollectionProcess
    domain_of:
    - SampleCollectionProcess
    range: SampleMaterial
  collected_from:
    name: collected_from
    from_schema: https://w3id.org/linkml-common/investigations
    rank: 1000
    alias: collected_from
    owner: SampleCollectionProcess
    domain_of:
    - SampleCollectionProcess
    range: PhysicalEntity
  follows_procedure:
    name: follows_procedure
    from_schema: https://w3id.org/linkml-common/investigations
    rank: 1000
    alias: follows_procedure
    owner: SampleCollectionProcess
    domain_of:
    - InvestigativeProcess
    - PlannedProcess
    - EngineeringProcess
    range: InvestigativeProtocol
  part_of:
    name: part_of
    from_schema: https://w3id.org/linkml-common/investigations
    rank: 1000
    alias: part_of
    owner: SampleCollectionProcess
    domain_of:
    - InvestigativeProcess
    - EngineeringProcess
    range: Investigation
  uses_physical_device:
    name: uses_physical_device
    from_schema: https://w3id.org/linkml-common/plannedprocess
    rank: 1000
    alias: uses_physical_device
    owner: SampleCollectionProcess
    domain_of:
    - PlannedProcess
    range: PhysicalDevice
  uses_configuration:
    name: uses_configuration
    from_schema: https://w3id.org/linkml-common/plannedprocess
    rank: 1000
    alias: uses_configuration
    owner: SampleCollectionProcess
    domain_of:
    - PlannedProcess
    range: PlannedProcessConfiguration
  starts_at:
    name: starts_at
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: starts_at
    owner: SampleCollectionProcess
    domain_of:
    - Event
    - TimePointOrTemporalInterval
    - TemporalInterval
    range: TimePoint
  ends_at:
    name: ends_at
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: ends_at
    owner: SampleCollectionProcess
    domain_of:
    - Event
    - TimePointOrTemporalInterval
    - TemporalInterval
    range: TimePoint
  happens_at:
    name: happens_at
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: happens_at
    owner: SampleCollectionProcess
    domain_of:
    - Event
    range: TimePoint
  has_interval:
    name: has_interval
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: has_interval
    owner: SampleCollectionProcess
    domain_of:
    - Event
    range: TemporalInterval
  has_duration:
    name: has_duration
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: has_duration
    owner: SampleCollectionProcess
    domain_of:
    - Event
    range: Duration
  is_ongoing_as_of:
    name: is_ongoing_as_of
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: is_ongoing_as_of
    owner: SampleCollectionProcess
    domain_of:
    - Event
    range: TimePoint
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: SampleCollectionProcess
    domain_of:
    - Identified
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/linkml/linkml-common
    exact_mappings:
    - rdfs:label
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: SampleCollectionProcess
    domain_of:
    - Identified
    range: string
  type:
    name: type
    description: A type for a thing. The range of this should be a class within the
      schema. It is intended for schema-based classification. Anything beneath the
      shoreline of the schema should use `classification`.
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    designates_type: true
    alias: type
    owner: SampleCollectionProcess
    domain_of:
    - Typed
    range: string