Skip to content

Class: SampleCollectionProcess

URI: linkml_common:SampleCollectionProcess

classDiagram class SampleCollectionProcess InvestigativeProcess <|-- SampleCollectionProcess SampleCollectionProcess : classification SampleCollectionProcess --> Concept : classification SampleCollectionProcess : collected_from SampleCollectionProcess --> NamedThing : collected_from SampleCollectionProcess : description SampleCollectionProcess : ends_at SampleCollectionProcess --> TimePoint : ends_at SampleCollectionProcess : follows_procedure SampleCollectionProcess --> InvestigativeProtocol : follows_procedure SampleCollectionProcess : happens_at SampleCollectionProcess --> TimePoint : happens_at SampleCollectionProcess : has_duration SampleCollectionProcess --> Duration : has_duration SampleCollectionProcess : has_interval SampleCollectionProcess --> TemporalInterval : has_interval SampleCollectionProcess : id SampleCollectionProcess : material_collected SampleCollectionProcess --> SampleMaterial : material_collected SampleCollectionProcess : name SampleCollectionProcess : ontology_types SampleCollectionProcess --> Concept : ontology_types SampleCollectionProcess : part_of SampleCollectionProcess --> Investigation : part_of SampleCollectionProcess : starts_at SampleCollectionProcess --> TimePoint : starts_at SampleCollectionProcess : type SampleCollectionProcess : uses_physical_device SampleCollectionProcess --> PhysicalDevice : uses_physical_device

Inheritance

Slots

Name Cardinality and Range Description Inheritance
material_collected 0..1
SampleMaterial
direct
collected_from 0..1
NamedThing
direct
follows_procedure 0..1
InvestigativeProtocol
PlannedProcess, InvestigativeProcess
part_of 0..1
Investigation
InvestigativeProcess
uses_physical_device 0..1
PhysicalDevice
PlannedProcess
starts_at 0..1
TimePoint
Event
ends_at 0..1
TimePoint
Event
happens_at 0..1
TimePoint
Event
has_interval 0..1
TemporalInterval
Event
has_duration 0..1
Duration
Event
id 1..1
Uriorcurie
A unique identifier for a thing NamedThing
name 0..1
String
A human-readable name for a thing NamedThing
type 0..1
String
A type for a thing Entity, NamedThing
classification 0..1
Concept
A precise classification of the thing, using a concept from an ontology, cont... NamedThing
ontology_types 0..*
Concept
NamedThing
description 0..1
String
A human-readable description for a thing NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/linkml/linkml-common

Mappings

Mapping Type Mapped Value
self linkml_common:SampleCollectionProcess
native linkml_common:SampleCollectionProcess
exact nmdcschema:CollectingBiosamplesFromSite

LinkML Source

Direct

name: SampleCollectionProcess
from_schema: https://w3id.org/linkml/linkml-common
exact_mappings:
- nmdcschema:CollectingBiosamplesFromSite
is_a: InvestigativeProcess
attributes:
  material_collected:
    name: material_collected
    from_schema: https://w3id.org/linkml-common/investigations
    rank: 1000
    domain_of:
    - SampleCollectionProcess
    range: SampleMaterial
  collected_from:
    name: collected_from
    from_schema: https://w3id.org/linkml-common/investigations
    rank: 1000
    domain_of:
    - SampleCollectionProcess
    range: NamedThing

Induced

name: SampleCollectionProcess
from_schema: https://w3id.org/linkml/linkml-common
exact_mappings:
- nmdcschema:CollectingBiosamplesFromSite
is_a: InvestigativeProcess
attributes:
  material_collected:
    name: material_collected
    from_schema: https://w3id.org/linkml-common/investigations
    rank: 1000
    alias: material_collected
    owner: SampleCollectionProcess
    domain_of:
    - SampleCollectionProcess
    range: SampleMaterial
  collected_from:
    name: collected_from
    from_schema: https://w3id.org/linkml-common/investigations
    rank: 1000
    alias: collected_from
    owner: SampleCollectionProcess
    domain_of:
    - SampleCollectionProcess
    range: NamedThing
  follows_procedure:
    name: follows_procedure
    from_schema: https://w3id.org/linkml-common/investigations
    rank: 1000
    alias: follows_procedure
    owner: SampleCollectionProcess
    domain_of:
    - InvestigativeProcess
    - EngineeringProcess
    - PlannedProcess
    range: InvestigativeProtocol
  part_of:
    name: part_of
    from_schema: https://w3id.org/linkml-common/investigations
    rank: 1000
    alias: part_of
    owner: SampleCollectionProcess
    domain_of:
    - InvestigativeProcess
    - EngineeringProcess
    range: Investigation
  uses_physical_device:
    name: uses_physical_device
    from_schema: https://w3id.org/linkml-common/plannedprocess
    rank: 1000
    alias: uses_physical_device
    owner: SampleCollectionProcess
    domain_of:
    - PlannedProcess
    range: PhysicalDevice
  starts_at:
    name: starts_at
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: starts_at
    owner: SampleCollectionProcess
    domain_of:
    - Event
    - TimePointOrTemporalInterval
    - TemporalInterval
    range: TimePoint
  ends_at:
    name: ends_at
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: ends_at
    owner: SampleCollectionProcess
    domain_of:
    - Event
    - TimePointOrTemporalInterval
    - TemporalInterval
    range: TimePoint
  happens_at:
    name: happens_at
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: happens_at
    owner: SampleCollectionProcess
    domain_of:
    - Event
    range: TimePoint
  has_interval:
    name: has_interval
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: has_interval
    owner: SampleCollectionProcess
    domain_of:
    - Event
    range: TemporalInterval
  has_duration:
    name: has_duration
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: has_duration
    owner: SampleCollectionProcess
    domain_of:
    - Event
    range: Duration
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: SampleCollectionProcess
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: SampleCollectionProcess
    domain_of:
    - NamedThing
    range: string
  type:
    name: type
    description: A type for a thing. The range of this should be a class within the
      schema. It is intended for schema-based classification. Anything beneath the
      shoreline of the schema should use `classification`.
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    designates_type: true
    alias: type
    owner: SampleCollectionProcess
    domain_of:
    - Entity
    - NamedThing
    range: string
  classification:
    name: classification
    description: A precise classification of the thing, using a concept from an ontology,
      controlled vocabulary, thesaurus, or taxonomy. Some schema classes may choose
      to restrict the range of values which this slot can take, using `values_from`,
      or bindings.
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    alias: classification
    owner: SampleCollectionProcess
    domain_of:
    - NamedThing
    range: Concept
  ontology_types:
    name: ontology_types
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    multivalued: true
    alias: ontology_types
    owner: SampleCollectionProcess
    domain_of:
    - NamedThing
    range: Concept
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/linkml/linkml-common
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: SampleCollectionProcess
    domain_of:
    - NamedThing
    - TimePoint
    range: string