Class: SchemaDefinition

name: schema_definition
description: a collection of subset, type, slot and class definitions
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
- RelationalModelProfile
- ObjectOrientedProfile
- OwlProfile
from_schema: https://w3id.org/linkml/meta
see_also:
- https://en.wikipedia.org/wiki/Data_dictionary
aliases:
- data dictionary
rank: 1
is_a: element
slots:
- id
- version
- imports
- license
- prefixes
- emit_prefixes
- default_curi_maps
- default_prefix
- default_range
- subsets
- types
- enums
- slot_definitions
- classes
- metamodel_version
- source_file
- source_file_date
- source_file_size
- generation_date
- slot_names_unique
- settings
- categories
- keywords
slot_usage:
  name:
    name: name
    description: a unique name for the schema that is both human-readable and consists
      of only characters from the NCName set
    domain_of:
    - element
    - element
    range: ncname
tree_root: true

name: schema_definition
description: a collection of subset, type, slot and class definitions
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
- RelationalModelProfile
- ObjectOrientedProfile
- OwlProfile
from_schema: https://w3id.org/linkml/meta
see_also:
- https://en.wikipedia.org/wiki/Data_dictionary
aliases:
- data dictionary
rank: 1
is_a: element
slot_usage:
  name:
    name: name
    description: a unique name for the schema that is both human-readable and consists
      of only characters from the NCName set
    domain_of:
    - element
    - element
    range: ncname
attributes:
  id:
    name: id
    description: The official schema URI
    in_subset:
    - SpecificationSubset
    - MinimalSubset
    - BasicSubset
    - OwlProfile
    from_schema: https://w3id.org/linkml/meta
    rank: 0
    domain: schema_definition
    alias: id
    owner: schema_definition
    domain_of:
    - schema_definition
    range: uri
    required: true
  version:
    name: version
    description: particular version of schema
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    exact_mappings:
    - schema:schemaVersion
    rank: 1000
    domain: schema_definition
    slot_uri: pav:version
    alias: version
    owner: schema_definition
    domain_of:
    - schema_definition
    range: string
  imports:
    name: imports
    description: other schemas that are included in this schema
    in_subset:
    - SpecificationSubset
    - BasicSubset
    - OwlProfile
    from_schema: https://w3id.org/linkml/meta
    rank: 21
    domain: schema_definition
    multivalued: true
    alias: imports
    owner: schema_definition
    domain_of:
    - schema_definition
    range: uriorcurie
  license:
    name: license
    description: license for the schema
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 31
    domain: schema_definition
    slot_uri: dcterms:license
    alias: license
    owner: schema_definition
    domain_of:
    - schema_definition
    range: string
  prefixes:
    name: prefixes
    description: prefix / URI definitions to be added to the context beyond those
      fetched from prefixcommons in id prefixes
    in_subset:
    - SpecificationSubset
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 10
    domain: schema_definition
    multivalued: true
    alias: prefixes
    owner: schema_definition
    domain_of:
    - schema_definition
    range: prefix
    inlined: true
  emit_prefixes:
    name: emit_prefixes
    description: a list of Curie prefixes that are used in the representation of instances
      of the model.  All prefixes in this list are added to the prefix sections of
      the target models.
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: schema_definition
    multivalued: true
    alias: emit_prefixes
    owner: schema_definition
    domain_of:
    - schema_definition
    range: ncname
  default_curi_maps:
    name: default_curi_maps
    description: ordered list of prefixcommon biocontexts to be fetched to resolve
      id prefixes and inline prefix variables
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: schema_definition
    multivalued: true
    alias: default_curi_maps
    owner: schema_definition
    domain_of:
    - schema_definition
    range: string
  default_prefix:
    name: default_prefix
    description: default and base prefix -- used for ':' identifiers, @base and @vocab
    in_subset:
    - SpecificationSubset
    - MinimalSubset
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 11
    domain: schema_definition
    ifabsent: default_ns
    alias: default_prefix
    owner: schema_definition
    domain_of:
    - schema_definition
    range: string
  default_range:
    name: default_range
    description: default slot range to be used if range element is omitted from a
      slot definition
    notes:
    - restricted to type definitions for the time being.  Could be broadened if required
    in_subset:
    - SpecificationSubset
    - MinimalSubset
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 13
    domain: schema_definition
    alias: default_range
    owner: schema_definition
    domain_of:
    - schema_definition
    range: type_definition
  subsets:
    name: subsets
    description: An index to the collection of all subset definitions in the schema
    in_subset:
    - SpecificationSubset
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    exact_mappings:
    - OIO:hasSubset
    rank: 8
    domain: schema_definition
    multivalued: true
    alias: subsets
    owner: schema_definition
    domain_of:
    - schema_definition
    range: subset_definition
    inlined: true
  types:
    name: types
    description: An index to the collection of all type definitions in the schema
    in_subset:
    - BasicSubset
    - ObjectOrientedProfile
    - OwlProfile
    from_schema: https://w3id.org/linkml/meta
    rank: 6
    domain: schema_definition
    multivalued: true
    alias: types
    owner: schema_definition
    domain_of:
    - schema_definition
    range: type_definition
    inlined: true
  enums:
    name: enums
    description: An index to the collection of all enum definitions in the schema
    in_subset:
    - SpecificationSubset
    - BasicSubset
    - ObjectOrientedProfile
    - OwlProfile
    from_schema: https://w3id.org/linkml/meta
    rank: 5
    domain: schema_definition
    multivalued: true
    alias: enums
    owner: schema_definition
    domain_of:
    - schema_definition
    range: enum_definition
    inlined: true
  slot_definitions:
    name: slot_definitions
    description: An index to the collection of all slot definitions in the schema
    in_subset:
    - SpecificationSubset
    - BasicSubset
    - OwlProfile
    from_schema: https://w3id.org/linkml/meta
    rank: 4
    domain: schema_definition
    multivalued: true
    alias: slots
    owner: schema_definition
    domain_of:
    - schema_definition
    range: slot_definition
    inlined: true
  classes:
    name: classes
    description: An index to the collection of all class definitions in the schema
    in_subset:
    - SpecificationSubset
    - MinimalSubset
    - BasicSubset
    - RelationalModelProfile
    - ObjectOrientedProfile
    - OwlProfile
    from_schema: https://w3id.org/linkml/meta
    rank: 3
    domain: schema_definition
    multivalued: true
    alias: classes
    owner: schema_definition
    domain_of:
    - schema_definition
    range: class_definition
    inlined: true
  metamodel_version:
    name: metamodel_version
    description: Version of the metamodel used to load the schema
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: schema_definition
    readonly: supplied by the schema loader
    alias: metamodel_version
    owner: schema_definition
    domain_of:
    - schema_definition
    range: string
  source_file:
    name: source_file
    description: name, uri or description of the source of the schema
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: schema_definition
    readonly: suppplied by the schema loader
    alias: source_file
    owner: schema_definition
    domain_of:
    - schema_definition
    range: string
  source_file_date:
    name: source_file_date
    description: modification date of the source of the schema
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: schema_definition
    readonly: supplied by the loader
    alias: source_file_date
    owner: schema_definition
    domain_of:
    - schema_definition
    range: datetime
  source_file_size:
    name: source_file_size
    description: size in bytes of the source of the schema
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: schema_definition
    readonly: supplied by the schema loader
    alias: source_file_size
    owner: schema_definition
    domain_of:
    - schema_definition
    range: integer
  generation_date:
    name: generation_date
    description: date and time that the schema was loaded/generated
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: schema_definition
    readonly: supplied by the schema loader
    alias: generation_date
    owner: schema_definition
    domain_of:
    - schema_definition
    range: datetime
  slot_names_unique:
    name: slot_names_unique
    description: if true then induced/mangled slot names are not created for class_usage
      and attributes
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: definition
    alias: slot_names_unique
    owner: schema_definition
    domain_of:
    - schema_definition
    - class_definition
    range: boolean
  settings:
    name: settings
    description: A collection of global variable settings
    comments:
    - global variables are used in string interpolation
    in_subset:
    - SpecificationSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 20
    domain: schema_definition
    multivalued: true
    alias: settings
    owner: schema_definition
    domain_of:
    - schema_definition
    range: setting
    inlined: true
  categories:
    name: categories
    description: controlled terms used to categorize an element
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    singular_name: category
    slot_uri: dcterms:subject
    multivalued: true
    alias: categories
    owner: schema_definition
    domain_of:
    - schema_definition
    - structured_alias
    range: uriorcurie
  keywords:
    name: keywords
    description: Keywords or tags used to describe the element
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    singular_name: keyword
    domain: element
    slot_uri: schema:keywords
    multivalued: true
    alias: keywords
    owner: schema_definition
    domain_of:
    - schema_definition
    range: string
  name:
    name: name
    description: a unique name for the schema that is both human-readable and consists
      of only characters from the NCName set
    from_schema: https://w3id.org/linkml/meta
    rank: 1
    domain: element
    slot_uri: rdfs:label
    identifier: true
    alias: name
    owner: schema_definition
    domain_of:
    - element
    - element
    range: ncname
  id_prefixes:
    name: id_prefixes
    description: the identifier of this class or slot must begin with the URIs referenced
      by this prefix
    comments:
    - Order of elements may be used to indicate priority order
    - If identifiers are treated as CURIEs, then the CURIE must start with one of
      the indicated prefixes followed by `:` (_should_ start if the list is open)
    - If identifiers are treated as URIs, then the URI string must start with the
      expanded for of the prefix (_should_ start if the list is open)
    in_subset:
    - SpecificationSubset
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    see_also:
    - https://github.com/linkml/linkml/issues/194
    - https://github.com/linkml/linkml-model/issues/28
    rank: 1000
    domain: element
    multivalued: true
    alias: id_prefixes
    owner: schema_definition
    domain_of:
    - element
    range: ncname
  definition_uri:
    name: definition_uri
    description: the "native" URI of the element
    comments:
    - Formed by combining the default_prefix with the mangled element
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: element
    readonly: filled in by the schema loader
    alias: definition_uri
    owner: schema_definition
    domain_of:
    - element
    range: uriorcurie
  local_names:
    name: local_names
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: element
    multivalued: true
    alias: local_names
    owner: schema_definition
    domain_of:
    - element
    range: local_name
    inlined: true
  conforms_to:
    name: conforms_to
    description: An established standard to which the element conforms.
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: element
    slot_uri: dcterms:conformsTo
    alias: conforms_to
    owner: schema_definition
    domain_of:
    - element
    range: string
  extensions:
    name: extensions
    description: a tag/text tuple attached to an arbitrary element
    from_schema: https://w3id.org/linkml/extensions
    rank: 1000
    domain: extensible
    multivalued: true
    alias: extensions
    owner: schema_definition
    domain_of:
    - extension
    - extensible
    range: extension
    inlined: true
  annotations:
    name: annotations
    description: a collection of tag/text tuples with the semantics of OWL Annotation
    from_schema: https://w3id.org/linkml/annotations
    rank: 1000
    is_a: extensions
    domain: annotatable
    multivalued: true
    alias: annotations
    owner: schema_definition
    domain_of:
    - annotatable
    - annotation
    range: annotation
    inlined: true
  description:
    name: description
    description: a description of the element's purpose and use
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    aliases:
    - definition
    exact_mappings:
    - dcterms:description
    - schema:description
    rank: 5
    domain: element
    slot_uri: skos:definition
    alias: description
    owner: schema_definition
    domain_of:
    - common_metadata
    - permissible_value
    range: string
    recommended: true
  alt_descriptions:
    name: alt_descriptions
    description: A sourced alternative description for an element
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    aliases:
    - alternate definitions
    rank: 1000
    domain: element
    multivalued: true
    alias: alt_descriptions
    owner: schema_definition
    domain_of:
    - common_metadata
    range: alt_description
    inlined: true
  title:
    name: title
    description: the official title of the element
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    aliases:
    - long name
    rank: 3
    domain: element
    slot_uri: dcterms:title
    alias: title
    owner: schema_definition
    domain_of:
    - common_metadata
    range: string
  deprecated:
    name: deprecated
    description: Description of why and when this element will no longer be used
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    close_mappings:
    - owl:deprecated
    rank: 1000
    domain: element
    alias: deprecated
    owner: schema_definition
    domain_of:
    - common_metadata
    range: string
  todos:
    name: todos
    description: Outstanding issue that needs resolution
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: element
    multivalued: true
    alias: todos
    owner: schema_definition
    domain_of:
    - common_metadata
    range: string
  notes:
    name: notes
    description: editorial notes about an element intended for internal consumption
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: element
    slot_uri: skos:editorialNote
    multivalued: true
    alias: notes
    owner: schema_definition
    domain_of:
    - common_metadata
    range: string
  comments:
    name: comments
    description: notes and comments about an element intended for external consumption
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    exact_mappings:
    - rdfs:comment
    rank: 1000
    domain: element
    slot_uri: skos:note
    multivalued: true
    alias: comments
    owner: schema_definition
    domain_of:
    - common_metadata
    range: string
  examples:
    name: examples
    description: example usages of an element
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    close_mappings:
    - vann:example
    rank: 1000
    singular_name: example
    domain: element
    multivalued: true
    alias: examples
    owner: schema_definition
    domain_of:
    - common_metadata
    range: example
    inlined: true
  in_subset:
    name: in_subset
    description: used to indicate membership of a term in a defined subset of terms
      used for a particular domain or application (e.g. the translator_minimal subset
      holding the minimal set of predicates used in a translator knowledge graph)
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: element
    slot_uri: OIO:inSubset
    multivalued: true
    alias: in_subset
    owner: schema_definition
    domain_of:
    - common_metadata
    range: subset_definition
  from_schema:
    name: from_schema
    description: id of the schema that defined the element
    notes:
    - A stronger model would be range schema_definition, but this doesn't address
      the import model
    in_subset:
    - SpecificationSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: element
    slot_uri: skos:inScheme
    readonly: supplied by the schema loader
    alias: from_schema
    owner: schema_definition
    domain_of:
    - common_metadata
    range: uri
  imported_from:
    name: imported_from
    description: the imports entry that this element was derived from.  Empty means
      primary source
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: element
    readonly: supplied by the schema loader
    alias: imported_from
    owner: schema_definition
    domain_of:
    - common_metadata
    range: string
  source:
    name: source
    description: A related resource from which the element is derived.
    comments:
    - The described resource may be derived from the related resource in whole or
      in part
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    aliases:
    - origin
    - derived from
    close_mappings:
    - prov:wasDerivedFrom
    - schema:isBasedOn
    rank: 1000
    domain: element
    slot_uri: dcterms:source
    alias: source
    owner: schema_definition
    domain_of:
    - common_metadata
    range: uriorcurie
  in_language:
    name: in_language
    notes:
    - Use a string from IETF BCP 47
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    slot_uri: schema:inLanguage
    alias: in_language
    owner: schema_definition
    domain_of:
    - common_metadata
    range: string
  see_also:
    name: see_also
    description: a reference
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    domain: element
    slot_uri: rdfs:seeAlso
    multivalued: true
    alias: see_also
    owner: schema_definition
    domain_of:
    - common_metadata
    range: uriorcurie
  deprecated element has exact replacement:
    name: deprecated element has exact replacement
    description: When an element is deprecated, it can be automatically replaced by
      this uri or curie
    from_schema: https://w3id.org/linkml/mappings
    mappings:
    - IAO:0100001
    rank: 1000
    alias: deprecated_element_has_exact_replacement
    owner: schema_definition
    domain_of:
    - common_metadata
    range: uriorcurie
  deprecated element has possible replacement:
    name: deprecated element has possible replacement
    description: When an element is deprecated, it can be potentially replaced by
      this uri or curie
    from_schema: https://w3id.org/linkml/mappings
    mappings:
    - OIO:consider
    rank: 1000
    alias: deprecated_element_has_possible_replacement
    owner: schema_definition
    domain_of:
    - common_metadata
    range: uriorcurie
  aliases:
    name: aliases
    description: Alaternate names for the element
    in_subset:
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    aliases:
    - synonyms
    - alternate names
    - alternative labels
    - designations
    exact_mappings:
    - schema:alternateName
    rank: 1000
    domain: element
    slot_uri: skos:altLabel
    multivalued: true
    alias: aliases
    owner: schema_definition
    domain_of:
    - common_metadata
    range: string
  structured_aliases:
    name: structured_aliases
    description: A list of structured_alias objects.
    from_schema: https://w3id.org/linkml/meta
    rank: 1000
    slot_uri: skosxl:altLabel
    multivalued: true
    alias: structured_aliases
    owner: schema_definition
    domain_of:
    - common_metadata
    range: structured_alias
    inlined: true
  mappings:
    name: mappings
    description: A list of terms from different schemas or terminology systems that
      have comparable meaning. These may include terms that are precisely equivalent,
      broader or narrower in meaning, or otherwise semantically related but not equivalent
      from a strict ontological perspective.
    from_schema: https://w3id.org/linkml/mappings
    aliases:
    - xrefs
    - identifiers
    - alternate identifiers
    - alternate ids
    rank: 1000
    slot_uri: skos:mappingRelation
    multivalued: true
    alias: mappings
    owner: schema_definition
    domain_of:
    - common_metadata
    range: uriorcurie
  exact mappings:
    name: exact mappings
    description: A list of terms from different schemas or terminology systems that
      have identical meaning.
    from_schema: https://w3id.org/linkml/mappings
    rank: 1000
    is_a: mappings
    slot_uri: skos:exactMatch
    multivalued: true
    inherited: false
    alias: exact_mappings
    owner: schema_definition
    domain_of:
    - common_metadata
    - UnitOfMeasure
    range: uriorcurie
  close mappings:
    name: close mappings
    description: A list of terms from different schemas or terminology systems that
      have close meaning.
    from_schema: https://w3id.org/linkml/mappings
    rank: 1000
    is_a: mappings
    slot_uri: skos:closeMatch
    multivalued: true
    inherited: false
    alias: close_mappings
    owner: schema_definition
    domain_of:
    - common_metadata
    range: uriorcurie
  related mappings:
    name: related mappings
    description: A list of terms from different schemas or terminology systems that
      have related meaning.
    from_schema: https://w3id.org/linkml/mappings
    rank: 1000
    is_a: mappings
    slot_uri: skos:relatedMatch
    multivalued: true
    inherited: false
    alias: related_mappings
    owner: schema_definition
    domain_of:
    - common_metadata
    range: uriorcurie
  narrow mappings:
    name: narrow mappings
    description: A list of terms from different schemas or terminology systems that
      have narrower meaning.
    from_schema: https://w3id.org/linkml/mappings
    rank: 1000
    is_a: mappings
    slot_uri: skos:narrowMatch
    multivalued: true
    inherited: false
    alias: narrow_mappings
    owner: schema_definition
    domain_of:
    - common_metadata
    range: uriorcurie
  broad mappings:
    name: broad mappings
    description: A list of terms from different schemas or terminology systems that
      have broader meaning.
    from_schema: https://w3id.org/linkml/mappings
    rank: 1000
    is_a: mappings
    slot_uri: skos:broadMatch
    multivalued: true
    inherited: false
    alias: broad_mappings
    owner: schema_definition
    domain_of:
    - common_metadata
    range: uriorcurie
  rank:
    name: rank
    description: the relative order in which the element occurs, lower values are
      given precedence
    comments:
    - the rank of an element does not affect the semantics
    in_subset:
    - SpecificationSubset
    - BasicSubset
    from_schema: https://w3id.org/linkml/meta
    aliases:
    - order
    - precedence
    - display order
    exact_mappings:
    - qudt:order
    rank: 51
    slot_uri: sh:order
    alias: rank
    owner: schema_definition
    domain_of:
    - common_metadata
    - class_rule
    range: integer
tree_root: true