Class: PathExpression
An expression that describes an abstract path from an object to another through a sequence of slot lookups
classDiagram
class PathExpression
Expression <|-- PathExpression
Extensible <|-- PathExpression
Annotatable <|-- PathExpression
CommonMetadata <|-- PathExpression
PathExpression : aliases
PathExpression : all_of
PathExpression --> path_expression : all_of
PathExpression : alt_descriptions
PathExpression --> alt_description : alt_descriptions
PathExpression : annotations
PathExpression --> annotation : annotations
PathExpression : any_of
PathExpression --> path_expression : any_of
PathExpression : broad_mappings
PathExpression : categories
PathExpression : close_mappings
PathExpression : comments
PathExpression : contributors
PathExpression : created_by
PathExpression : created_on
PathExpression : deprecated
PathExpression : deprecated_element_has_exact_replacement
PathExpression : deprecated_element_has_possible_replacement
PathExpression : description
PathExpression : exact_mappings
PathExpression : exactly_one_of
PathExpression --> path_expression : exactly_one_of
PathExpression : examples
PathExpression --> example : examples
PathExpression : extensions
PathExpression --> extension : extensions
PathExpression : followed_by
PathExpression --> path_expression : followed_by
PathExpression : from_schema
PathExpression : imported_from
PathExpression : in_language
PathExpression : in_subset
PathExpression --> subset_definition : in_subset
PathExpression : keywords
PathExpression : last_updated_on
PathExpression : mappings
PathExpression : modified_by
PathExpression : narrow_mappings
PathExpression : none_of
PathExpression --> path_expression : none_of
PathExpression : notes
PathExpression : range_expression
PathExpression --> anonymous_class_expression : range_expression
PathExpression : rank
PathExpression : related_mappings
PathExpression : reversed
PathExpression : see_also
PathExpression : source
PathExpression : status
PathExpression : structured_aliases
PathExpression --> structured_alias : structured_aliases
PathExpression : title
PathExpression : todos
PathExpression : traverse
PathExpression --> slot_definition : traverse
Inheritance
- PathExpression [ Expression Extensible Annotatable CommonMetadata]
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
followed_by | 0..1 PathExpression |
in a sequential list, this indicates the next member | direct |
none_of | 0..* PathExpression |
holds if none of the expressions hold | direct |
any_of | 0..* PathExpression |
holds if at least one of the expressions hold | direct |
all_of | 0..* PathExpression |
holds if all of the expressions hold | direct |
exactly_one_of | 0..* PathExpression |
holds if only one of the expressions hold | direct |
reversed | 0..1 Boolean |
true if the slot is to be inversed | direct |
traverse | 0..1 SlotDefinition |
the slot to traverse | direct |
range_expression | 0..1 AnonymousClassExpression |
A range that is described as a boolean expression combining existing ranges | direct |
extensions | 0..* Extension |
a tag/text tuple attached to an arbitrary element | Extensible |
annotations | 0..* Annotation |
a collection of tag/text tuples with the semantics of OWL Annotation | Annotatable |
description | 0..1 recommended String |
a textual description of the element's purpose and use | CommonMetadata |
alt_descriptions | 0..* AltDescription |
A sourced alternative description for an element | CommonMetadata |
title | 0..1 String |
A concise human-readable display label for the element | CommonMetadata |
deprecated | 0..1 String |
Description of why and when this element will no longer be used | CommonMetadata |
todos | 0..* String |
Outstanding issues that needs resolution | CommonMetadata |
notes | 0..* String |
editorial notes about an element intended primarily for internal consumption | CommonMetadata |
comments | 0..* String |
notes and comments about an element intended primarily for external consumpti... | CommonMetadata |
examples | 0..* Example |
example usages of an element | CommonMetadata |
in_subset | 0..* SubsetDefinition |
used to indicate membership of a term in a defined subset of terms used for a... | CommonMetadata |
from_schema | 0..1 Uri |
id of the schema that defined the element | CommonMetadata |
imported_from | 0..1 String |
the imports entry that this element was derived from | CommonMetadata |
source | 0..1 Uriorcurie |
A related resource from which the element is derived | CommonMetadata |
in_language | 0..1 String |
the primary language used in the sources | CommonMetadata |
see_also | 0..* Uriorcurie |
A list of related entities or URLs that may be of relevance | CommonMetadata |
deprecated_element_has_exact_replacement | 0..1 Uriorcurie |
When an element is deprecated, it can be automatically replaced by this uri o... | CommonMetadata |
deprecated_element_has_possible_replacement | 0..1 Uriorcurie |
When an element is deprecated, it can be potentially replaced by this uri or ... | CommonMetadata |
aliases | 0..* String |
Alternate names/labels for the element | CommonMetadata |
structured_aliases | 0..* StructuredAlias |
A list of structured_alias objects, used to provide aliases in conjunction wi... | CommonMetadata |
mappings | 0..* Uriorcurie |
A list of terms from different schemas or terminology systems that have compa... | CommonMetadata |
exact_mappings | 0..* Uriorcurie |
A list of terms from different schemas or terminology systems that have ident... | CommonMetadata |
close_mappings | 0..* Uriorcurie |
A list of terms from different schemas or terminology systems that have close... | CommonMetadata |
related_mappings | 0..* Uriorcurie |
A list of terms from different schemas or terminology systems that have relat... | CommonMetadata |
narrow_mappings | 0..* Uriorcurie |
A list of terms from different schemas or terminology systems that have narro... | CommonMetadata |
broad_mappings | 0..* Uriorcurie |
A list of terms from different schemas or terminology systems that have broad... | CommonMetadata |
created_by | 0..1 Uriorcurie |
agent that created the element | CommonMetadata |
contributors | 0..* Uriorcurie |
agent that contributed to the element | CommonMetadata |
created_on | 0..1 Datetime |
time at which the element was created | CommonMetadata |
last_updated_on | 0..1 Datetime |
time at which the element was last updated | CommonMetadata |
modified_by | 0..1 Uriorcurie |
agent that modified the element | CommonMetadata |
status | 0..1 Uriorcurie |
status of the element | CommonMetadata |
rank | 0..1 Integer |
the relative order in which the element occurs, lower values are given preced... | CommonMetadata |
categories | 0..* Uriorcurie |
Controlled terms used to categorize an element | CommonMetadata |
keywords | 0..* String |
Keywords or tags used to describe the element | CommonMetadata |
Usages
used by | used in | type | used |
---|---|---|---|
PathExpression | followed_by | range | PathExpression |
PathExpression | none_of | range | PathExpression |
PathExpression | any_of | range | PathExpression |
PathExpression | all_of | range | PathExpression |
PathExpression | exactly_one_of | range | PathExpression |
SlotDefinition | path_rule | range | PathExpression |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/linkml/meta
Mappings
Mapping Type | Mapped Value |
---|---|
self | linkml:PathExpression |
native | linkml:PathExpression |
LinkML Source
Direct
name: path_expression
description: An expression that describes an abstract path from an object to another
through a sequence of slot lookups
from_schema: https://w3id.org/linkml/meta
mixins:
- expression
- extensible
- annotatable
- common_metadata
slots:
- followed_by
- none_of
- any_of
- all_of
- exactly_one_of
- reversed
- traverse
- range_expression
slot_usage:
followed_by:
name: followed_by
domain_of:
- path_expression
range: path_expression
any_of:
name: any_of
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: path_expression
exactly_one_of:
name: exactly_one_of
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: path_expression
none_of:
name: none_of
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: path_expression
all_of:
name: all_of
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: path_expression
Induced
name: path_expression
description: An expression that describes an abstract path from an object to another
through a sequence of slot lookups
from_schema: https://w3id.org/linkml/meta
mixins:
- expression
- extensible
- annotatable
- common_metadata
slot_usage:
followed_by:
name: followed_by
domain_of:
- path_expression
range: path_expression
any_of:
name: any_of
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: path_expression
exactly_one_of:
name: exactly_one_of
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: path_expression
none_of:
name: none_of
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: path_expression
all_of:
name: all_of
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: path_expression
attributes:
followed_by:
name: followed_by
description: in a sequential list, this indicates the next member
from_schema: https://w3id.org/linkml/meta
rank: 1000
alias: followed_by
owner: path_expression
domain_of:
- path_expression
range: path_expression
none_of:
name: none_of
description: holds if none of the expressions hold
from_schema: https://w3id.org/linkml/meta
rank: 105
is_a: boolean_slot
multivalued: true
alias: none_of
owner: path_expression
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: path_expression
any_of:
name: any_of
description: holds if at least one of the expressions hold
from_schema: https://w3id.org/linkml/meta
rank: 101
is_a: boolean_slot
multivalued: true
alias: any_of
owner: path_expression
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: path_expression
all_of:
name: all_of
description: holds if all of the expressions hold
from_schema: https://w3id.org/linkml/meta
rank: 107
is_a: boolean_slot
multivalued: true
alias: all_of
owner: path_expression
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: path_expression
exactly_one_of:
name: exactly_one_of
description: holds if only one of the expressions hold
from_schema: https://w3id.org/linkml/meta
rank: 103
is_a: boolean_slot
multivalued: true
alias: exactly_one_of
owner: path_expression
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: path_expression
reversed:
name: reversed
description: true if the slot is to be inversed
from_schema: https://w3id.org/linkml/meta
rank: 1000
alias: reversed
owner: path_expression
domain_of:
- path_expression
range: boolean
traverse:
name: traverse
description: the slot to traverse
from_schema: https://w3id.org/linkml/meta
rank: 1000
alias: traverse
owner: path_expression
domain_of:
- path_expression
range: slot_definition
range_expression:
name: range_expression
description: A range that is described as a boolean expression combining existing
ranges
comments:
- one use for this is being able to describe a range using any_of expressions,
for example to combine two enums
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
status: testing
rank: 1000
domain: slot_expression
alias: range_expression
owner: path_expression
domain_of:
- path_expression
- slot_expression
range: anonymous_class_expression
extensions:
name: extensions
description: a tag/text tuple attached to an arbitrary element
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: extensible
multivalued: true
alias: extensions
owner: path_expression
domain_of:
- extension
- extensible
range: extension
inlined: true
annotations:
name: annotations
description: a collection of tag/text tuples with the semantics of OWL Annotation
from_schema: https://w3id.org/linkml/meta
rank: 1000
is_a: extensions
domain: annotatable
multivalued: true
alias: annotations
owner: path_expression
domain_of:
- annotatable
- annotation
range: annotation
inlined: true
description:
name: description
description: a textual description of the element's purpose and use
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- definition
exact_mappings:
- dcterms:description
- schema:description
rank: 5
domain: element
slot_uri: skos:definition
alias: description
owner: path_expression
domain_of:
- common_metadata
- permissible_value
range: string
recommended: true
alt_descriptions:
name: alt_descriptions
description: A sourced alternative description for an element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- alternate definitions
rank: 1000
domain: element
multivalued: true
alias: alt_descriptions
owner: path_expression
domain_of:
- common_metadata
range: alt_description
inlined: true
title:
name: title
description: A concise human-readable display label for the element. The title
should mirror the name, and should use ordinary textual punctuation.
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- long name
rank: 3
domain: element
slot_uri: dcterms:title
alias: title
owner: path_expression
domain_of:
- common_metadata
range: string
deprecated:
name: deprecated
description: Description of why and when this element will no longer be used
comments:
- note that linkml does not use a boolean to indicate deprecation status - the
presence of a string value in this field is sufficient to indicate deprecation.
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- owl:deprecated
rank: 1000
domain: element
alias: deprecated
owner: path_expression
domain_of:
- common_metadata
range: string
todos:
name: todos
description: Outstanding issues that needs resolution
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
multivalued: true
alias: todos
owner: path_expression
domain_of:
- common_metadata
range: string
notes:
name: notes
description: editorial notes about an element intended primarily for internal
consumption
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: skos:editorialNote
multivalued: true
alias: notes
owner: path_expression
domain_of:
- common_metadata
range: string
comments:
name: comments
description: notes and comments about an element intended primarily for external
consumption
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
exact_mappings:
- rdfs:comment
rank: 1000
domain: element
slot_uri: skos:note
multivalued: true
alias: comments
owner: path_expression
domain_of:
- common_metadata
range: string
examples:
name: examples
description: example usages of an element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- vann:example
rank: 1000
singular_name: example
domain: element
multivalued: true
alias: examples
owner: path_expression
domain_of:
- common_metadata
range: example
inlined: true
in_subset:
name: in_subset
description: used to indicate membership of a term in a defined subset of terms
used for a particular domain or application.
comments:
- an example of use in the translator_minimal subset in the biolink model, holding
the minimal set of predicates used in a translator knowledge graph
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: OIO:inSubset
multivalued: true
alias: in_subset
owner: path_expression
domain_of:
- common_metadata
range: subset_definition
from_schema:
name: from_schema
description: id of the schema that defined the element
notes:
- A stronger model would be range schema_definition, but this doesn't address
the import model
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: skos:inScheme
readonly: supplied by the schema loader or schema view
alias: from_schema
owner: path_expression
domain_of:
- common_metadata
range: uri
imported_from:
name: imported_from
description: the imports entry that this element was derived from. Empty means
primary source
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
readonly: supplied by the schema loader or schema view
alias: imported_from
owner: path_expression
domain_of:
- common_metadata
range: string
source:
name: source
description: A related resource from which the element is derived.
comments:
- The described resource may be derived from the related resource in whole or
in part
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- origin
- derived from
close_mappings:
- prov:wasDerivedFrom
- schema:isBasedOn
rank: 1000
domain: element
slot_uri: dcterms:source
alias: source
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
in_language:
name: in_language
conforms_to: https://www.rfc-editor.org/rfc/bcp/bcp47.txt
description: the primary language used in the sources
comments:
- Recommended to use a string from IETF BCP 47
from_schema: https://w3id.org/linkml/meta
rank: 1000
slot_uri: schema:inLanguage
alias: in_language
owner: path_expression
domain_of:
- common_metadata
range: string
see_also:
name: see_also
description: A list of related entities or URLs that may be of relevance
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: rdfs:seeAlso
multivalued: true
alias: see_also
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
deprecated element has exact replacement:
name: deprecated element has exact replacement
description: When an element is deprecated, it can be automatically replaced by
this uri or curie
from_schema: https://w3id.org/linkml/meta
mappings:
- IAO:0100001
rank: 1000
alias: deprecated_element_has_exact_replacement
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
deprecated element has possible replacement:
name: deprecated element has possible replacement
description: When an element is deprecated, it can be potentially replaced by
this uri or curie
from_schema: https://w3id.org/linkml/meta
mappings:
- OIO:consider
rank: 1000
alias: deprecated_element_has_possible_replacement
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
aliases:
name: aliases
description: Alternate names/labels for the element. These do not alter the semantics
of the schema, but may be useful to support search and alignment.
comments:
- not be confused with the metaslot alias.
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- synonyms
- alternate names
- alternative labels
- designations
exact_mappings:
- schema:alternateName
rank: 1000
domain: element
slot_uri: skos:altLabel
multivalued: true
alias: aliases
owner: path_expression
domain_of:
- common_metadata
range: string
structured_aliases:
name: structured_aliases
description: A list of structured_alias objects, used to provide aliases in conjunction
with additional metadata.
from_schema: https://w3id.org/linkml/meta
see_also:
- linkml:aliases
rank: 1000
slot_uri: skosxl:altLabel
multivalued: true
alias: structured_aliases
owner: path_expression
domain_of:
- common_metadata
range: structured_alias
inlined: true
mappings:
name: mappings
description: A list of terms from different schemas or terminology systems that
have comparable meaning. These may include terms that are precisely equivalent,
broader or narrower in meaning, or otherwise semantically related but not equivalent
from a strict ontological perspective.
from_schema: https://w3id.org/linkml/meta
aliases:
- xrefs
- identifiers
- alternate identifiers
- alternate ids
rank: 1000
slot_uri: skos:mappingRelation
multivalued: true
alias: mappings
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
exact mappings:
name: exact mappings
description: A list of terms from different schemas or terminology systems that
have identical meaning.
from_schema: https://w3id.org/linkml/meta
rank: 1000
is_a: mappings
slot_uri: skos:exactMatch
multivalued: true
inherited: false
alias: exact_mappings
owner: path_expression
domain_of:
- common_metadata
- UnitOfMeasure
range: uriorcurie
close mappings:
name: close mappings
description: A list of terms from different schemas or terminology systems that
have close meaning.
from_schema: https://w3id.org/linkml/meta
rank: 1000
is_a: mappings
slot_uri: skos:closeMatch
multivalued: true
inherited: false
alias: close_mappings
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
related mappings:
name: related mappings
description: A list of terms from different schemas or terminology systems that
have related meaning.
from_schema: https://w3id.org/linkml/meta
rank: 1000
is_a: mappings
slot_uri: skos:relatedMatch
multivalued: true
inherited: false
alias: related_mappings
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
narrow mappings:
name: narrow mappings
description: A list of terms from different schemas or terminology systems that
have narrower meaning.
from_schema: https://w3id.org/linkml/meta
rank: 1000
is_a: mappings
slot_uri: skos:narrowMatch
multivalued: true
inherited: false
alias: narrow_mappings
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
broad mappings:
name: broad mappings
description: A list of terms from different schemas or terminology systems that
have broader meaning.
from_schema: https://w3id.org/linkml/meta
rank: 1000
is_a: mappings
slot_uri: skos:broadMatch
multivalued: true
inherited: false
alias: broad_mappings
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
created_by:
name: created_by
description: agent that created the element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: pav:createdBy
alias: created_by
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
contributors:
name: contributors
description: agent that contributed to the element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: dcterms:contributor
multivalued: true
alias: contributors
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
created_on:
name: created_on
description: time at which the element was created
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: pav:createdOn
alias: created_on
owner: path_expression
domain_of:
- common_metadata
range: datetime
last_updated_on:
name: last_updated_on
description: time at which the element was last updated
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: pav:lastUpdatedOn
alias: last_updated_on
owner: path_expression
domain_of:
- common_metadata
range: datetime
modified_by:
name: modified_by
description: agent that modified the element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: oslc:modifiedBy
alias: modified_by
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
status:
name: status
description: status of the element
examples:
- value: bibo:draft
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
see_also:
- https://www.hl7.org/fhir/valueset-publication-status.html
- https://www.hl7.org/fhir/versions.html#std-process
aliases:
- workflow status
rank: 1000
domain: element
slot_uri: bibo:status
alias: status
owner: path_expression
domain_of:
- common_metadata
range: uriorcurie
rank:
name: rank
description: the relative order in which the element occurs, lower values are
given precedence
comments:
- the rank of an element does not affect the semantics
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- order
- precedence
- display order
exact_mappings:
- qudt:order
- qb:order
rank: 51
slot_uri: sh:order
alias: rank
owner: path_expression
domain_of:
- common_metadata
- class_rule
range: integer
categories:
name: categories
description: Controlled terms used to categorize an element.
comments:
- if you wish to use uncontrolled terms or terms that lack identifiers then use
the keywords element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
singular_name: category
slot_uri: dcterms:subject
multivalued: true
alias: categories
owner: path_expression
domain_of:
- common_metadata
- structured_alias
range: uriorcurie
keywords:
name: keywords
description: Keywords or tags used to describe the element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
singular_name: keyword
domain: element
slot_uri: schema:keywords
multivalued: true
alias: keywords
owner: path_expression
domain_of:
- common_metadata
range: string