Class: SchemaDefinition
A collection of definitions that make up a schema or a data model.
classDiagram
class SchemaDefinition
Element <|-- SchemaDefinition
SchemaDefinition : aliases
SchemaDefinition : alt_descriptions
SchemaDefinition --> alt_description : alt_descriptions
SchemaDefinition : annotations
SchemaDefinition --> annotation : annotations
SchemaDefinition : bindings
SchemaDefinition --> enum_binding : bindings
SchemaDefinition : broad_mappings
SchemaDefinition : categories
SchemaDefinition : classes
SchemaDefinition --> class_definition : classes
SchemaDefinition : close_mappings
SchemaDefinition : comments
SchemaDefinition : conforms_to
SchemaDefinition : contributors
SchemaDefinition : created_by
SchemaDefinition : created_on
SchemaDefinition : default_curi_maps
SchemaDefinition : default_prefix
SchemaDefinition : default_range
SchemaDefinition --> type_definition : default_range
SchemaDefinition : definition_uri
SchemaDefinition : deprecated
SchemaDefinition : deprecated_element_has_exact_replacement
SchemaDefinition : deprecated_element_has_possible_replacement
SchemaDefinition : description
SchemaDefinition : emit_prefixes
SchemaDefinition : enums
SchemaDefinition --> enum_definition : enums
SchemaDefinition : exact_mappings
SchemaDefinition : examples
SchemaDefinition --> example : examples
SchemaDefinition : extensions
SchemaDefinition --> extension : extensions
SchemaDefinition : from_schema
SchemaDefinition : generation_date
SchemaDefinition : id
SchemaDefinition : id_prefixes
SchemaDefinition : id_prefixes_are_closed
SchemaDefinition : implements
SchemaDefinition : imported_from
SchemaDefinition : imports
SchemaDefinition : in_language
SchemaDefinition : in_subset
SchemaDefinition --> subset_definition : in_subset
SchemaDefinition : instantiates
SchemaDefinition : keywords
SchemaDefinition : last_updated_on
SchemaDefinition : license
SchemaDefinition : local_names
SchemaDefinition --> local_name : local_names
SchemaDefinition : mappings
SchemaDefinition : metamodel_version
SchemaDefinition : modified_by
SchemaDefinition : name
SchemaDefinition : narrow_mappings
SchemaDefinition : notes
SchemaDefinition : prefixes
SchemaDefinition --> prefix : prefixes
SchemaDefinition : rank
SchemaDefinition : related_mappings
SchemaDefinition : see_also
SchemaDefinition : settings
SchemaDefinition --> setting : settings
SchemaDefinition : slot_definitions
SchemaDefinition --> slot_definition : slot_definitions
SchemaDefinition : slot_names_unique
SchemaDefinition : source
SchemaDefinition : source_file
SchemaDefinition : source_file_date
SchemaDefinition : source_file_size
SchemaDefinition : status
SchemaDefinition : structured_aliases
SchemaDefinition --> structured_alias : structured_aliases
SchemaDefinition : subsets
SchemaDefinition --> subset_definition : subsets
SchemaDefinition : title
SchemaDefinition : todos
SchemaDefinition : types
SchemaDefinition --> type_definition : types
SchemaDefinition : version
Inheritance
- Element [ Extensible Annotatable CommonMetadata]
- SchemaDefinition
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
id | 1..1 Uri |
The official schema URI | direct |
version | 0..1 String |
particular version of schema | direct |
imports | 0..* Uriorcurie |
A list of schemas that are to be included in this schema | direct |
license | 0..1 String |
license for the schema | direct |
prefixes | 0..* Prefix |
A collection of prefix expansions that specify how CURIEs can be expanded to ... | direct |
emit_prefixes | 0..* Ncname |
a list of Curie prefixes that are used in the representation of instances of ... | direct |
default_curi_maps | 0..* String |
ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... | direct |
default_prefix | 0..1 String |
The prefix that is used for all elements within a schema | direct |
default_range | 0..1 TypeDefinition |
default slot range to be used if range element is omitted from a slot definit... | direct |
subsets | 0..* SubsetDefinition |
An index to the collection of all subset definitions in the schema | direct |
types | 0..* TypeDefinition |
An index to the collection of all type definitions in the schema | direct |
enums | 0..* EnumDefinition |
An index to the collection of all enum definitions in the schema | direct |
slot_definitions | 0..* SlotDefinition |
An index to the collection of all slot definitions in the schema | direct |
classes | 0..* ClassDefinition |
An index to the collection of all class definitions in the schema | direct |
metamodel_version | 0..1 String |
Version of the metamodel used to load the schema | direct |
source_file | 0..1 String |
name, uri or description of the source of the schema | direct |
source_file_date | 0..1 Datetime |
modification date of the source of the schema | direct |
source_file_size | 0..1 Integer |
size in bytes of the source of the schema | direct |
generation_date | 0..1 Datetime |
date and time that the schema was loaded/generated | direct |
slot_names_unique | 0..1 Boolean |
if true then induced/mangled slot names are not created for class_usage and a... | direct |
settings | 0..* Setting |
A collection of global variable settings | direct |
bindings | 0..* EnumBinding |
A collection of enum bindings that specify how a slot can be bound to a permi... | direct |
name | 1..1 Ncname |
a unique name for the schema that is both human-readable and consists of only... | Element |
id_prefixes | 0..* Ncname |
An allowed list of prefixes for which identifiers must conform | Element |
id_prefixes_are_closed | 0..1 Boolean |
If true, then the id_prefixes slot is treated as being closed, and any use of... | Element |
definition_uri | 0..1 Uriorcurie |
The native URI of the element | Element |
local_names | 0..* LocalName |
Element | |
conforms_to | 0..1 String |
An established standard to which the element conforms | Element |
implements | 0..* Uriorcurie |
An element in another schema which this element conforms to | Element |
instantiates | 0..* Uriorcurie |
An element in another schema which this element instantiates | Element |
extensions | 0..* Extension |
a tag/text tuple attached to an arbitrary element | Extensible |
annotations | 0..* Annotation |
a collection of tag/text tuples with the semantics of OWL Annotation | Annotatable |
description | 0..1 recommended String |
a textual description of the element's purpose and use | CommonMetadata |
alt_descriptions | 0..* AltDescription |
A sourced alternative description for an element | CommonMetadata |
title | 0..1 String |
A concise human-readable display label for the element | CommonMetadata |
deprecated | 0..1 String |
Description of why and when this element will no longer be used | CommonMetadata |
todos | 0..* String |
Outstanding issues that needs resolution | CommonMetadata |
notes | 0..* String |
editorial notes about an element intended primarily for internal consumption | CommonMetadata |
comments | 0..* String |
notes and comments about an element intended primarily for external consumpti... | CommonMetadata |
examples | 0..* Example |
example usages of an element | CommonMetadata |
in_subset | 0..* SubsetDefinition |
used to indicate membership of a term in a defined subset of terms used for a... | CommonMetadata |
from_schema | 0..1 Uri |
id of the schema that defined the element | CommonMetadata |
imported_from | 0..1 String |
the imports entry that this element was derived from | CommonMetadata |
source | 0..1 Uriorcurie |
A related resource from which the element is derived | CommonMetadata |
in_language | 0..1 String |
the primary language used in the sources | CommonMetadata |
see_also | 0..* Uriorcurie |
A list of related entities or URLs that may be of relevance | CommonMetadata |
deprecated_element_has_exact_replacement | 0..1 Uriorcurie |
When an element is deprecated, it can be automatically replaced by this uri o... | CommonMetadata |
deprecated_element_has_possible_replacement | 0..1 Uriorcurie |
When an element is deprecated, it can be potentially replaced by this uri or ... | CommonMetadata |
aliases | 0..* String |
Alternate names/labels for the element | CommonMetadata |
structured_aliases | 0..* StructuredAlias |
A list of structured_alias objects, used to provide aliases in conjunction wi... | CommonMetadata |
mappings | 0..* Uriorcurie |
A list of terms from different schemas or terminology systems that have compa... | CommonMetadata |
exact_mappings | 0..* Uriorcurie |
A list of terms from different schemas or terminology systems that have ident... | CommonMetadata |
close_mappings | 0..* Uriorcurie |
A list of terms from different schemas or terminology systems that have close... | CommonMetadata |
related_mappings | 0..* Uriorcurie |
A list of terms from different schemas or terminology systems that have relat... | CommonMetadata |
narrow_mappings | 0..* Uriorcurie |
A list of terms from different schemas or terminology systems that have narro... | CommonMetadata |
broad_mappings | 0..* Uriorcurie |
A list of terms from different schemas or terminology systems that have broad... | CommonMetadata |
created_by | 0..1 Uriorcurie |
agent that created the element | CommonMetadata |
contributors | 0..* Uriorcurie |
agent that contributed to the element | CommonMetadata |
created_on | 0..1 Datetime |
time at which the element was created | CommonMetadata |
last_updated_on | 0..1 Datetime |
time at which the element was last updated | CommonMetadata |
modified_by | 0..1 Uriorcurie |
agent that modified the element | CommonMetadata |
status | 0..1 Uriorcurie |
status of the element | CommonMetadata |
rank | 0..1 Integer |
the relative order in which the element occurs, lower values are given preced... | CommonMetadata |
categories | 0..* Uriorcurie |
Controlled terms used to categorize an element | CommonMetadata |
keywords | 0..* String |
Keywords or tags used to describe the element | CommonMetadata |
Usages
Aliases
- data dictionary
- data model
- information model
- logical model
- schema
- model
See Also
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/linkml/meta
Mappings
Mapping Type | Mapped Value |
---|---|
self | linkml:SchemaDefinition |
native | linkml:SchemaDefinition |
close | qb:ComponentSet, owl:Ontology |
LinkML Source
Direct
name: schema_definition
description: A collection of definitions that make up a schema or a data model.
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
- RelationalModelProfile
- ObjectOrientedProfile
- OwlProfile
from_schema: https://w3id.org/linkml/meta
see_also:
- https://en.wikipedia.org/wiki/Data_dictionary
aliases:
- data dictionary
- data model
- information model
- logical model
- schema
- model
close_mappings:
- qb:ComponentSet
- owl:Ontology
rank: 1
is_a: element
slots:
- id
- version
- imports
- license
- prefixes
- emit_prefixes
- default_curi_maps
- default_prefix
- default_range
- subsets
- types
- enums
- slot_definitions
- classes
- metamodel_version
- source_file
- source_file_date
- source_file_size
- generation_date
- slot_names_unique
- settings
- bindings
slot_usage:
name:
name: name
description: a unique name for the schema that is both human-readable and consists
of only characters from the NCName set
domain_of:
- element
range: ncname
tree_root: true
Induced
name: schema_definition
description: A collection of definitions that make up a schema or a data model.
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
- RelationalModelProfile
- ObjectOrientedProfile
- OwlProfile
from_schema: https://w3id.org/linkml/meta
see_also:
- https://en.wikipedia.org/wiki/Data_dictionary
aliases:
- data dictionary
- data model
- information model
- logical model
- schema
- model
close_mappings:
- qb:ComponentSet
- owl:Ontology
rank: 1
is_a: element
slot_usage:
name:
name: name
description: a unique name for the schema that is both human-readable and consists
of only characters from the NCName set
domain_of:
- element
range: ncname
attributes:
id:
name: id
description: The official schema URI
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
- OwlProfile
from_schema: https://w3id.org/linkml/meta
rank: 0
domain: schema_definition
alias: id
owner: schema_definition
domain_of:
- schema_definition
range: uri
required: true
version:
name: version
description: particular version of schema
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
exact_mappings:
- schema:schemaVersion
rank: 1000
domain: schema_definition
slot_uri: pav:version
alias: version
owner: schema_definition
domain_of:
- schema_definition
range: string
imports:
name: imports
description: A list of schemas that are to be included in this schema
in_subset:
- SpecificationSubset
- BasicSubset
- OwlProfile
from_schema: https://w3id.org/linkml/meta
rank: 21
domain: schema_definition
multivalued: true
alias: imports
owner: schema_definition
domain_of:
- schema_definition
range: uriorcurie
license:
name: license
description: license for the schema
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 31
domain: schema_definition
slot_uri: dcterms:license
alias: license
owner: schema_definition
domain_of:
- schema_definition
range: string
prefixes:
name: prefixes
description: A collection of prefix expansions that specify how CURIEs can be
expanded to URIs
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 10
domain: schema_definition
slot_uri: sh:declare
multivalued: true
alias: prefixes
owner: schema_definition
domain_of:
- schema_definition
range: prefix
inlined: true
emit_prefixes:
name: emit_prefixes
description: a list of Curie prefixes that are used in the representation of instances
of the model. All prefixes in this list are added to the prefix sections of
the target models.
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: schema_definition
multivalued: true
alias: emit_prefixes
owner: schema_definition
domain_of:
- schema_definition
range: ncname
default_curi_maps:
name: default_curi_maps
description: ordered list of prefixcommon biocontexts to be fetched to resolve
id prefixes and inline prefix variables
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: schema_definition
multivalued: true
alias: default_curi_maps
owner: schema_definition
domain_of:
- schema_definition
range: string
default_prefix:
name: default_prefix
description: The prefix that is used for all elements within a schema
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 11
domain: schema_definition
ifabsent: default_ns
alias: default_prefix
owner: schema_definition
domain_of:
- schema_definition
range: string
default_range:
name: default_range
description: default slot range to be used if range element is omitted from a
slot definition
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 13
domain: schema_definition
alias: default_range
owner: schema_definition
domain_of:
- schema_definition
range: type_definition
subsets:
name: subsets
description: An index to the collection of all subset definitions in the schema
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
exact_mappings:
- OIO:hasSubset
rank: 8
domain: schema_definition
multivalued: true
alias: subsets
owner: schema_definition
domain_of:
- schema_definition
range: subset_definition
inlined: true
types:
name: types
description: An index to the collection of all type definitions in the schema
in_subset:
- BasicSubset
- ObjectOrientedProfile
- OwlProfile
from_schema: https://w3id.org/linkml/meta
rank: 6
domain: schema_definition
multivalued: true
alias: types
owner: schema_definition
domain_of:
- schema_definition
range: type_definition
inlined: true
enums:
name: enums
description: An index to the collection of all enum definitions in the schema
in_subset:
- SpecificationSubset
- BasicSubset
- ObjectOrientedProfile
- OwlProfile
from_schema: https://w3id.org/linkml/meta
rank: 5
domain: schema_definition
multivalued: true
alias: enums
owner: schema_definition
domain_of:
- schema_definition
range: enum_definition
inlined: true
slot_definitions:
name: slot_definitions
description: An index to the collection of all slot definitions in the schema
comments:
- note the formal name of this element is slot_definitions, but it has alias slots,
which is the canonical form used in yaml/json serializes of schemas.
in_subset:
- SpecificationSubset
- BasicSubset
- OwlProfile
from_schema: https://w3id.org/linkml/meta
rank: 4
domain: schema_definition
multivalued: true
alias: slots
owner: schema_definition
domain_of:
- schema_definition
range: slot_definition
inlined: true
classes:
name: classes
description: An index to the collection of all class definitions in the schema
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
- RelationalModelProfile
- ObjectOrientedProfile
- OwlProfile
from_schema: https://w3id.org/linkml/meta
rank: 3
domain: schema_definition
multivalued: true
alias: classes
owner: schema_definition
domain_of:
- schema_definition
range: class_definition
inlined: true
metamodel_version:
name: metamodel_version
description: Version of the metamodel used to load the schema
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: schema_definition
readonly: supplied by the schema loader or schema view
alias: metamodel_version
owner: schema_definition
domain_of:
- schema_definition
range: string
source_file:
name: source_file
description: name, uri or description of the source of the schema
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: schema_definition
readonly: supplied by the schema loader
alias: source_file
owner: schema_definition
domain_of:
- schema_definition
range: string
source_file_date:
name: source_file_date
description: modification date of the source of the schema
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: schema_definition
readonly: supplied by the loader
alias: source_file_date
owner: schema_definition
domain_of:
- schema_definition
range: datetime
source_file_size:
name: source_file_size
description: size in bytes of the source of the schema
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: schema_definition
readonly: supplied by the schema loader or schema view
alias: source_file_size
owner: schema_definition
domain_of:
- schema_definition
range: integer
generation_date:
name: generation_date
description: date and time that the schema was loaded/generated
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: schema_definition
readonly: supplied by the schema loader or schema view
alias: generation_date
owner: schema_definition
domain_of:
- schema_definition
range: datetime
slot_names_unique:
name: slot_names_unique
description: if true then induced/mangled slot names are not created for class_usage
and attributes
from_schema: https://w3id.org/linkml/meta
status: testing
rank: 1000
domain: definition
alias: slot_names_unique
owner: schema_definition
domain_of:
- schema_definition
- class_definition
range: boolean
settings:
name: settings
description: A collection of global variable settings
comments:
- global variables are used in string interpolation in structured patterns
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- constants
rank: 20
domain: schema_definition
multivalued: true
alias: settings
owner: schema_definition
domain_of:
- schema_definition
range: setting
inlined: true
bindings:
name: bindings
description: 'A collection of enum bindings that specify how a slot can be bound
to a permissible value from an enumeration.
LinkML provides enums to allow string values to be restricted to one of a set
of permissible values (specified statically or dynamically).
Enum bindings allow enums to be bound to any object, including complex nested
objects. For example, given a (generic) class Concept with slots id and label,
it may be desirable to restrict the values the id takes on in a given context.
For example, a HumanSample class may have a slot for representing sample site,
with a range of concept, but the values of that slot may be restricted to concepts
from a particular branch of an anatomy ontology.'
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
status: testing
rank: 1000
domain: element
multivalued: true
alias: bindings
owner: schema_definition
domain_of:
- schema_definition
- slot_expression
range: enum_binding
inlined: true
name:
name: name
description: a unique name for the schema that is both human-readable and consists
of only characters from the NCName set
from_schema: https://w3id.org/linkml/meta
rank: 1
domain: element
slot_uri: rdfs:label
identifier: true
alias: name
owner: schema_definition
domain_of:
- element
range: ncname
required: true
id_prefixes:
name: id_prefixes
description: An allowed list of prefixes for which identifiers must conform. The
identifier of this class or slot must begin with the URIs referenced by this
prefix
comments:
- Order of elements may be used to indicate priority order
- If identifiers are treated as CURIEs, then the CURIE must start with one of
the indicated prefixes followed by `:` (_should_ start if the list is open)
- If identifiers are treated as URIs, then the URI string must start with the
expanded for of the prefix (_should_ start if the list is open)
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
see_also:
- https://github.com/linkml/linkml-model/issues/28
rank: 1000
domain: element
multivalued: true
alias: id_prefixes
owner: schema_definition
domain_of:
- element
range: ncname
id_prefixes_are_closed:
name: id_prefixes_are_closed
description: If true, then the id_prefixes slot is treated as being closed, and
any use of an id that does not have this prefix is considered a violation.
from_schema: https://w3id.org/linkml/meta
see_also:
- https://github.com/linkml/linkml/issues/194
rank: 1000
domain: element
alias: id_prefixes_are_closed
owner: schema_definition
domain_of:
- element
range: boolean
definition_uri:
name: definition_uri
description: The native URI of the element. This is always within the namespace
of the containing schema. Contrast with the assigned URI, via class_uri or slot_uri
comments:
- Formed by combining the default_prefix with the normalized element name
from_schema: https://w3id.org/linkml/meta
see_also:
- linkml:class_uri
- linkml:slot_uri
rank: 1000
domain: element
readonly: filled in by the schema loader or schema view
alias: definition_uri
owner: schema_definition
domain_of:
- element
range: uriorcurie
local_names:
name: local_names
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
multivalued: true
alias: local_names
owner: schema_definition
domain_of:
- element
range: local_name
inlined: true
conforms_to:
name: conforms_to
description: An established standard to which the element conforms.
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
see_also:
- linkml:implements
rank: 1000
domain: element
slot_uri: dcterms:conformsTo
alias: conforms_to
owner: schema_definition
domain_of:
- element
range: string
implements:
name: implements
description: An element in another schema which this element conforms to. The
referenced element is not imported into the schema for the implementing element.
However, the referenced schema may be used to check conformance of the implementing
element.
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
multivalued: true
alias: implements
owner: schema_definition
domain_of:
- element
- permissible_value
range: uriorcurie
instantiates:
name: instantiates
description: An element in another schema which this element instantiates.
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
multivalued: true
alias: instantiates
owner: schema_definition
domain_of:
- element
- permissible_value
range: uriorcurie
extensions:
name: extensions
description: a tag/text tuple attached to an arbitrary element
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: extensible
multivalued: true
alias: extensions
owner: schema_definition
domain_of:
- extension
- extensible
range: extension
inlined: true
annotations:
name: annotations
description: a collection of tag/text tuples with the semantics of OWL Annotation
from_schema: https://w3id.org/linkml/meta
rank: 1000
is_a: extensions
domain: annotatable
multivalued: true
alias: annotations
owner: schema_definition
domain_of:
- annotatable
- annotation
range: annotation
inlined: true
description:
name: description
description: a textual description of the element's purpose and use
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- definition
exact_mappings:
- dcterms:description
- schema:description
rank: 5
domain: element
slot_uri: skos:definition
alias: description
owner: schema_definition
domain_of:
- common_metadata
- permissible_value
range: string
recommended: true
alt_descriptions:
name: alt_descriptions
description: A sourced alternative description for an element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- alternate definitions
rank: 1000
domain: element
multivalued: true
alias: alt_descriptions
owner: schema_definition
domain_of:
- common_metadata
range: alt_description
inlined: true
title:
name: title
description: A concise human-readable display label for the element. The title
should mirror the name, and should use ordinary textual punctuation.
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- long name
rank: 3
domain: element
slot_uri: dcterms:title
alias: title
owner: schema_definition
domain_of:
- common_metadata
range: string
deprecated:
name: deprecated
description: Description of why and when this element will no longer be used
comments:
- note that linkml does not use a boolean to indicate deprecation status - the
presence of a string value in this field is sufficient to indicate deprecation.
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- owl:deprecated
rank: 1000
domain: element
alias: deprecated
owner: schema_definition
domain_of:
- common_metadata
range: string
todos:
name: todos
description: Outstanding issues that needs resolution
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
multivalued: true
alias: todos
owner: schema_definition
domain_of:
- common_metadata
range: string
notes:
name: notes
description: editorial notes about an element intended primarily for internal
consumption
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: skos:editorialNote
multivalued: true
alias: notes
owner: schema_definition
domain_of:
- common_metadata
range: string
comments:
name: comments
description: notes and comments about an element intended primarily for external
consumption
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
exact_mappings:
- rdfs:comment
rank: 1000
domain: element
slot_uri: skos:note
multivalued: true
alias: comments
owner: schema_definition
domain_of:
- common_metadata
range: string
examples:
name: examples
description: example usages of an element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- vann:example
rank: 1000
singular_name: example
domain: element
multivalued: true
alias: examples
owner: schema_definition
domain_of:
- common_metadata
range: example
inlined: true
in_subset:
name: in_subset
description: used to indicate membership of a term in a defined subset of terms
used for a particular domain or application.
comments:
- an example of use in the translator_minimal subset in the biolink model, holding
the minimal set of predicates used in a translator knowledge graph
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: OIO:inSubset
multivalued: true
alias: in_subset
owner: schema_definition
domain_of:
- common_metadata
range: subset_definition
from_schema:
name: from_schema
description: id of the schema that defined the element
notes:
- A stronger model would be range schema_definition, but this doesn't address
the import model
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: skos:inScheme
readonly: supplied by the schema loader or schema view
alias: from_schema
owner: schema_definition
domain_of:
- common_metadata
range: uri
imported_from:
name: imported_from
description: the imports entry that this element was derived from. Empty means
primary source
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
readonly: supplied by the schema loader or schema view
alias: imported_from
owner: schema_definition
domain_of:
- common_metadata
range: string
source:
name: source
description: A related resource from which the element is derived.
comments:
- The described resource may be derived from the related resource in whole or
in part
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- origin
- derived from
close_mappings:
- prov:wasDerivedFrom
- schema:isBasedOn
rank: 1000
domain: element
slot_uri: dcterms:source
alias: source
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
in_language:
name: in_language
conforms_to: https://www.rfc-editor.org/rfc/bcp/bcp47.txt
description: the primary language used in the sources
comments:
- Recommended to use a string from IETF BCP 47
from_schema: https://w3id.org/linkml/meta
rank: 1000
slot_uri: schema:inLanguage
alias: in_language
owner: schema_definition
domain_of:
- common_metadata
range: string
see_also:
name: see_also
description: A list of related entities or URLs that may be of relevance
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: rdfs:seeAlso
multivalued: true
alias: see_also
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
deprecated element has exact replacement:
name: deprecated element has exact replacement
description: When an element is deprecated, it can be automatically replaced by
this uri or curie
from_schema: https://w3id.org/linkml/meta
mappings:
- IAO:0100001
rank: 1000
alias: deprecated_element_has_exact_replacement
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
deprecated element has possible replacement:
name: deprecated element has possible replacement
description: When an element is deprecated, it can be potentially replaced by
this uri or curie
from_schema: https://w3id.org/linkml/meta
mappings:
- OIO:consider
rank: 1000
alias: deprecated_element_has_possible_replacement
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
aliases:
name: aliases
description: Alternate names/labels for the element. These do not alter the semantics
of the schema, but may be useful to support search and alignment.
comments:
- not be confused with the metaslot alias.
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- synonyms
- alternate names
- alternative labels
- designations
exact_mappings:
- schema:alternateName
rank: 1000
domain: element
slot_uri: skos:altLabel
multivalued: true
alias: aliases
owner: schema_definition
domain_of:
- common_metadata
range: string
structured_aliases:
name: structured_aliases
description: A list of structured_alias objects, used to provide aliases in conjunction
with additional metadata.
from_schema: https://w3id.org/linkml/meta
see_also:
- linkml:aliases
rank: 1000
slot_uri: skosxl:altLabel
multivalued: true
alias: structured_aliases
owner: schema_definition
domain_of:
- common_metadata
range: structured_alias
inlined: true
mappings:
name: mappings
description: A list of terms from different schemas or terminology systems that
have comparable meaning. These may include terms that are precisely equivalent,
broader or narrower in meaning, or otherwise semantically related but not equivalent
from a strict ontological perspective.
from_schema: https://w3id.org/linkml/meta
aliases:
- xrefs
- identifiers
- alternate identifiers
- alternate ids
rank: 1000
slot_uri: skos:mappingRelation
multivalued: true
alias: mappings
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
exact mappings:
name: exact mappings
description: A list of terms from different schemas or terminology systems that
have identical meaning.
from_schema: https://w3id.org/linkml/meta
rank: 1000
is_a: mappings
slot_uri: skos:exactMatch
multivalued: true
inherited: false
alias: exact_mappings
owner: schema_definition
domain_of:
- common_metadata
- UnitOfMeasure
range: uriorcurie
close mappings:
name: close mappings
description: A list of terms from different schemas or terminology systems that
have close meaning.
from_schema: https://w3id.org/linkml/meta
rank: 1000
is_a: mappings
slot_uri: skos:closeMatch
multivalued: true
inherited: false
alias: close_mappings
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
related mappings:
name: related mappings
description: A list of terms from different schemas or terminology systems that
have related meaning.
from_schema: https://w3id.org/linkml/meta
rank: 1000
is_a: mappings
slot_uri: skos:relatedMatch
multivalued: true
inherited: false
alias: related_mappings
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
narrow mappings:
name: narrow mappings
description: A list of terms from different schemas or terminology systems that
have narrower meaning.
from_schema: https://w3id.org/linkml/meta
rank: 1000
is_a: mappings
slot_uri: skos:narrowMatch
multivalued: true
inherited: false
alias: narrow_mappings
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
broad mappings:
name: broad mappings
description: A list of terms from different schemas or terminology systems that
have broader meaning.
from_schema: https://w3id.org/linkml/meta
rank: 1000
is_a: mappings
slot_uri: skos:broadMatch
multivalued: true
inherited: false
alias: broad_mappings
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
created_by:
name: created_by
description: agent that created the element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: pav:createdBy
alias: created_by
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
contributors:
name: contributors
description: agent that contributed to the element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: dcterms:contributor
multivalued: true
alias: contributors
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
created_on:
name: created_on
description: time at which the element was created
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: pav:createdOn
alias: created_on
owner: schema_definition
domain_of:
- common_metadata
range: datetime
last_updated_on:
name: last_updated_on
description: time at which the element was last updated
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: pav:lastUpdatedOn
alias: last_updated_on
owner: schema_definition
domain_of:
- common_metadata
range: datetime
modified_by:
name: modified_by
description: agent that modified the element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
domain: element
slot_uri: oslc:modifiedBy
alias: modified_by
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
status:
name: status
description: status of the element
examples:
- value: bibo:draft
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
see_also:
- https://www.hl7.org/fhir/valueset-publication-status.html
- https://www.hl7.org/fhir/versions.html#std-process
aliases:
- workflow status
rank: 1000
domain: element
slot_uri: bibo:status
alias: status
owner: schema_definition
domain_of:
- common_metadata
range: uriorcurie
rank:
name: rank
description: the relative order in which the element occurs, lower values are
given precedence
comments:
- the rank of an element does not affect the semantics
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- order
- precedence
- display order
exact_mappings:
- qudt:order
- qb:order
rank: 51
slot_uri: sh:order
alias: rank
owner: schema_definition
domain_of:
- common_metadata
- class_rule
range: integer
categories:
name: categories
description: Controlled terms used to categorize an element.
comments:
- if you wish to use uncontrolled terms or terms that lack identifiers then use
the keywords element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
singular_name: category
slot_uri: dcterms:subject
multivalued: true
alias: categories
owner: schema_definition
domain_of:
- common_metadata
- structured_alias
range: uriorcurie
keywords:
name: keywords
description: Keywords or tags used to describe the element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 1000
singular_name: keyword
domain: element
slot_uri: schema:keywords
multivalued: true
alias: keywords
owner: schema_definition
domain_of:
- common_metadata
range: string
tree_root: true