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Class: BiologicalObservation

An observation of a biological organism

URI: neon:BiologicalObservation

 classDiagram
    class BiologicalObservation
    click BiologicalObservation href "../BiologicalObservation/"
      Observation <|-- BiologicalObservation
        click Observation href "../Observation/"

      BiologicalObservation : data_product





        BiologicalObservation --> "1" DataProduct : data_product
        click DataProduct href "../DataProduct/"



      BiologicalObservation : individual_count

      BiologicalObservation : location





        BiologicalObservation --> "0..1" Location : location
        click Location href "../Location/"



      BiologicalObservation : observation_datetime

      BiologicalObservation : observation_id

      BiologicalObservation : occurrence_status

      BiologicalObservation : release





        BiologicalObservation --> "0..1" Release : release
        click Release href "../Release/"



      BiologicalObservation : sample





        BiologicalObservation --> "0..1" Sample : sample
        click Sample href "../Sample/"



      BiologicalObservation : site





        BiologicalObservation --> "1" Site : site
        click Site href "../Site/"



      BiologicalObservation : taxon





        BiologicalObservation --> "0..1" Taxon : taxon
        click Taxon href "../Taxon/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
taxon 0..1
Taxon		 Taxonomic identification direct
individual_count 0..1
Integer		 Number of individuals observed direct
occurrence_status 0..1
String		 Presence/absence status direct
sample 0..1
Sample		 Associated sample if collected direct
observation_id 1
String		 Unique observation identifier Observation
site 1
Site		 Site where observation was made Observation
location 0..1
Location		 Specific location of observation Observation
data_product 1
DataProduct		 Data product this observation belongs to Observation
observation_datetime 1
Datetime		 Date and time of observation Observation
release 0..1
Release		 Release this observation is from Observation

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/neon-schema

Mappings

Mapping Type Mapped Value
self neon:BiologicalObservation
native neon:BiologicalObservation

LinkML Source

Direct

name: BiologicalObservation
description: An observation of a biological organism
from_schema: https://w3id.org/neon-schema
is_a: Observation
attributes:
  taxon:
    name: taxon
    description: Taxonomic identification
    from_schema: https://w3id.org/neon-schema
    slot_uri: dwc:taxonID
    domain_of:
    - Sample
    - BiologicalObservation
    range: Taxon
    inlined: false
  individual_count:
    name: individual_count
    description: Number of individuals observed
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    slot_uri: dwc:individualCount
    domain_of:
    - BiologicalObservation
    range: integer
  occurrence_status:
    name: occurrence_status
    description: Presence/absence status
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    slot_uri: dwc:occurrenceStatus
    domain_of:
    - BiologicalObservation
    range: string
  sample:
    name: sample
    description: Associated sample if collected
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    domain_of:
    - BiologicalObservation
    range: Sample
    inlined: false

Induced

name: BiologicalObservation
description: An observation of a biological organism
from_schema: https://w3id.org/neon-schema
is_a: Observation
attributes:
  taxon:
    name: taxon
    description: Taxonomic identification
    from_schema: https://w3id.org/neon-schema
    slot_uri: dwc:taxonID
    alias: taxon
    owner: BiologicalObservation
    domain_of:
    - Sample
    - BiologicalObservation
    range: Taxon
    inlined: false
  individual_count:
    name: individual_count
    description: Number of individuals observed
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    slot_uri: dwc:individualCount
    alias: individual_count
    owner: BiologicalObservation
    domain_of:
    - BiologicalObservation
    range: integer
  occurrence_status:
    name: occurrence_status
    description: Presence/absence status
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    slot_uri: dwc:occurrenceStatus
    alias: occurrence_status
    owner: BiologicalObservation
    domain_of:
    - BiologicalObservation
    range: string
  sample:
    name: sample
    description: Associated sample if collected
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    alias: sample
    owner: BiologicalObservation
    domain_of:
    - BiologicalObservation
    range: Sample
    inlined: false
  observation_id:
    name: observation_id
    description: Unique observation identifier
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    slot_uri: dcterms:identifier
    identifier: true
    alias: observation_id
    owner: BiologicalObservation
    domain_of:
    - Observation
    range: string
    required: true
  site:
    name: site
    description: Site where observation was made
    from_schema: https://w3id.org/neon-schema
    slot_uri: dwc:locationID
    alias: site
    owner: BiologicalObservation
    domain_of:
    - Location
    - SiteAvailability
    - DataFile
    - Sample
    - Observation
    range: Site
    required: true
    inlined: false
  location:
    name: location
    description: Specific location of observation
    from_schema: https://w3id.org/neon-schema
    alias: location
    owner: BiologicalObservation
    domain_of:
    - Sample
    - Observation
    range: Location
    inlined: false
  data_product:
    name: data_product
    description: Data product this observation belongs to
    from_schema: https://w3id.org/neon-schema
    alias: data_product
    owner: BiologicalObservation
    domain_of:
    - DataFile
    - Sample
    - Observation
    range: DataProduct
    required: true
    inlined: false
  observation_datetime:
    name: observation_datetime
    description: Date and time of observation
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    slot_uri: dwc:eventDate
    alias: observation_datetime
    owner: BiologicalObservation
    domain_of:
    - Observation
    range: datetime
    required: true
  release:
    name: release
    description: Release this observation is from
    from_schema: https://w3id.org/neon-schema
    alias: release
    owner: BiologicalObservation
    domain_of:
    - DataFile
    - Observation
    range: Release
    inlined: false