Class: Sample

A physical sample collected by NEON, tracked through the Sample Management System (SMS).

 classDiagram
    class Sample
    click Sample href "../Sample/"
      Sample : archive_guid

      Sample : barcode

      Sample : child_samples





        Sample --> "*" Sample : child_samples
        click Sample href "../Sample/"



      Sample : collection_date

      Sample : data_product





        Sample --> "0..1" DataProduct : data_product
        click DataProduct href "../DataProduct/"



      Sample : location





        Sample --> "0..1" Location : location
        click Location href "../Location/"



      Sample : parent_samples





        Sample --> "*" Sample : parent_samples
        click Sample href "../Sample/"



      Sample : sample_class

      Sample : sample_events





        Sample --> "*" SampleEvent : sample_events
        click SampleEvent href "../SampleEvent/"



      Sample : sample_tag

      Sample : sample_uuid

      Sample : site





        Sample --> "0..1" Site : site
        click Site href "../Site/"



      Sample : taxon





        Sample --> "0..1" Taxon : taxon
        click Taxon href "../Taxon/"

Class Properties

Property	Value
Class URI	dwc:MaterialSample

Slots

Name	Cardinality and Range	Description	Inheritance
sample_uuid	1 String	Unique UUID for the sample	direct
sample_tag	0..1 String	Sample tag identifier	direct
sample_class	0..1 String	Sample class (ingest table + ID field)	direct
barcode	0..1 String	Sample barcode	direct
archive_guid	0..1 String	Globally unique archive identifier	direct
site	0..1 Site	Site where sample was collected	direct
location	0..1 Location	Specific location where sample was collected	direct
collection_date	0..1 Date	Date sample was collected	direct
taxon	0..1 Taxon	Taxonomic identification of sample (if biological)	direct
parent_samples	* Sample	Parent sample(s) this was derived from	direct
child_samples	* Sample	Child samples derived from this sample	direct
data_product	0..1 DataProduct	Data product this sample is associated with	direct
sample_events	* SampleEvent	Custody and processing events	direct

Usages

used by	used in	type	used
NeonDataset	samples	range	Sample
Sample	parent_samples	range	Sample
Sample	child_samples	range	Sample
BiologicalObservation	sample	range	Sample
BiorepositoryCollection	samples	range	Sample

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/neon-schema

Mappings

Mapping Type	Mapped Value
self	dwc:MaterialSample
native	neon:Sample

LinkML Source

Direct

name: Sample
description: A physical sample collected by NEON, tracked through the Sample Management
  System (SMS).
from_schema: https://w3id.org/neon-schema
attributes:
  sample_uuid:
    name: sample_uuid
    description: Unique UUID for the sample
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    slot_uri: dwc:materialSampleID
    identifier: true
    domain_of:
    - Sample
    range: string
    required: true
  sample_tag:
    name: sample_tag
    description: Sample tag identifier
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    domain_of:
    - Sample
    range: string
  sample_class:
    name: sample_class
    description: Sample class (ingest table + ID field)
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    domain_of:
    - Sample
    range: string
  barcode:
    name: barcode
    description: Sample barcode
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    domain_of:
    - Sample
    range: string
  archive_guid:
    name: archive_guid
    description: Globally unique archive identifier
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    domain_of:
    - Sample
    range: string
  site:
    name: site
    description: Site where sample was collected
    from_schema: https://w3id.org/neon-schema
    slot_uri: dwc:locationID
    domain_of:
    - Location
    - SiteAvailability
    - DataFile
    - Sample
    - Observation
    range: Site
    inlined: false
  location:
    name: location
    description: Specific location where sample was collected
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    domain_of:
    - Sample
    - Observation
    range: Location
    inlined: false
  collection_date:
    name: collection_date
    description: Date sample was collected
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    slot_uri: dwc:eventDate
    domain_of:
    - Sample
    range: date
  taxon:
    name: taxon
    description: Taxonomic identification of sample (if biological)
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    slot_uri: dwc:taxonID
    domain_of:
    - Sample
    - BiologicalObservation
    range: Taxon
    inlined: false
  parent_samples:
    name: parent_samples
    description: Parent sample(s) this was derived from
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    domain_of:
    - Sample
    range: Sample
    multivalued: true
    inlined: false
  child_samples:
    name: child_samples
    description: Child samples derived from this sample
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    domain_of:
    - Sample
    range: Sample
    multivalued: true
    inlined: false
  data_product:
    name: data_product
    description: Data product this sample is associated with
    from_schema: https://w3id.org/neon-schema
    domain_of:
    - DataFile
    - Sample
    - Observation
    range: DataProduct
    inlined: false
  sample_events:
    name: sample_events
    description: Custody and processing events
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    domain_of:
    - Sample
    range: SampleEvent
    multivalued: true
    inlined: true
    inlined_as_list: true
class_uri: dwc:MaterialSample

Induced

name: Sample
description: A physical sample collected by NEON, tracked through the Sample Management
  System (SMS).
from_schema: https://w3id.org/neon-schema
attributes:
  sample_uuid:
    name: sample_uuid
    description: Unique UUID for the sample
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    slot_uri: dwc:materialSampleID
    identifier: true
    alias: sample_uuid
    owner: Sample
    domain_of:
    - Sample
    range: string
    required: true
  sample_tag:
    name: sample_tag
    description: Sample tag identifier
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    alias: sample_tag
    owner: Sample
    domain_of:
    - Sample
    range: string
  sample_class:
    name: sample_class
    description: Sample class (ingest table + ID field)
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    alias: sample_class
    owner: Sample
    domain_of:
    - Sample
    range: string
  barcode:
    name: barcode
    description: Sample barcode
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    alias: barcode
    owner: Sample
    domain_of:
    - Sample
    range: string
  archive_guid:
    name: archive_guid
    description: Globally unique archive identifier
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    alias: archive_guid
    owner: Sample
    domain_of:
    - Sample
    range: string
  site:
    name: site
    description: Site where sample was collected
    from_schema: https://w3id.org/neon-schema
    slot_uri: dwc:locationID
    alias: site
    owner: Sample
    domain_of:
    - Location
    - SiteAvailability
    - DataFile
    - Sample
    - Observation
    range: Site
    inlined: false
  location:
    name: location
    description: Specific location where sample was collected
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    alias: location
    owner: Sample
    domain_of:
    - Sample
    - Observation
    range: Location
    inlined: false
  collection_date:
    name: collection_date
    description: Date sample was collected
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    slot_uri: dwc:eventDate
    alias: collection_date
    owner: Sample
    domain_of:
    - Sample
    range: date
  taxon:
    name: taxon
    description: Taxonomic identification of sample (if biological)
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    slot_uri: dwc:taxonID
    alias: taxon
    owner: Sample
    domain_of:
    - Sample
    - BiologicalObservation
    range: Taxon
    inlined: false
  parent_samples:
    name: parent_samples
    description: Parent sample(s) this was derived from
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    alias: parent_samples
    owner: Sample
    domain_of:
    - Sample
    range: Sample
    multivalued: true
    inlined: false
  child_samples:
    name: child_samples
    description: Child samples derived from this sample
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    alias: child_samples
    owner: Sample
    domain_of:
    - Sample
    range: Sample
    multivalued: true
    inlined: false
  data_product:
    name: data_product
    description: Data product this sample is associated with
    from_schema: https://w3id.org/neon-schema
    alias: data_product
    owner: Sample
    domain_of:
    - DataFile
    - Sample
    - Observation
    range: DataProduct
    inlined: false
  sample_events:
    name: sample_events
    description: Custody and processing events
    from_schema: https://w3id.org/neon-schema
    rank: 1000
    alias: sample_events
    owner: Sample
    domain_of:
    - Sample
    range: SampleEvent
    multivalued: true
    inlined: true
    inlined_as_list: true
class_uri: dwc:MaterialSample