LinkML Registry
For more information on LinkML:
Registry Entries
| Title | Topics | Stars | GitHub URL |
|---|---|---|---|
| biolink-model Schema and generated objects for biolink data model and upper ontology |
ai4curation, biolink, datamodel... | 226 (details) | biolink/biolink-model |
| sssom Simple Standard for Sharing Ontology Mappings |
linkml, mapping, mapping-commons... | 187 (details) | mapping-commons/sssom |
| DataHarmonizer A standardized browser-based spreadsheet editor and validator that can be run offline and locally, a... |
application, data, harmonization... | 120 (details) | cidgoh/DataHarmonizer |
| koza Data transformation framework for LinkML data models |
etl, knowledge-graph, koza... | 63 (details) | monarch-initiative/koza |
| sssom-py Python toolkit for SSSOM mapping format |
linkml, mappings, obofoundry... | 60 (details) | mapping-commons/sssom-py |
| semantic-sql SQL and SQLite builds of OWL ontologies |
ai4curation, linkml, monarchinitiative... | 58 (details) | INCATools/semantic-sql |
| artificial-intelligence-ontology An ontology modeling classes and relationships describing deep learning networks, their component la... |
47 (details) | berkeleybop/artificial-intelligence-ontology | |
| nmdc-schema National Microbiome Data Collaborative (NMDC) unified data model |
ecoinformatics, fair-data, genomics... | 45 (details) | microbiomedata/nmdc-schema |
| semantic-llama A knowledge extraction tool that uses a large language model to extract semantic information from te... |
ai, knowledge-extraction, language-models... | 29 (details) | cmungall/semantic-llama |
| nwb_hackathons Repository for collecting materials from nwb hackathons |
24 (details) | NeurodataWithoutBorders/nwb_hackathons | |
| monarch-ingest Data ingest application for Monarch Initiative knowledge graph using Koza |
kgx, knowledge-graphs, linkml... | 22 (details) | monarch-initiative/monarch-ingest |
| chemrof Schema for chemistry ontology classes |
chebi, chemistry, linkml... | 21 (details) | chemkg/chemrof |
| cogs Convention-based Ontology Generation System |
21 (details) | Colectica/cogs | |
| kgcl Datamodel for KGCL (Knowledge Graph Change Language) |
kgcl, linkml, ontology-changes... | 21 (details) | INCATools/kgcl |
| py-typedlogic Logic plus python types |
answer-set-programming, clif, clingo... | 20 (details) | py-typedlogic/py-typedlogic |
| kgcl-rdflib Tools for working with KGCL |
diff, diffs, kg... | 19 (details) | INCATools/kgcl-rdflib |
| ccdhmodel CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH) |
google-sheets, linkml | 17 (details) | cancerDHC/ccdhmodel |
| monochrom Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species |
ai4curation, chromosomes, etl... | 15 (details) | monarch-initiative/monochrom |
| ghga-metadata-schema Metadata schema for the German Human Genome-Phenome Archive (GHGA) |
fega, ghga, linkml... | 14 (details) | ghga-de/ghga-metadata-schema |
| markdown-corpus Many markdown files taken from around github |
13 (details) | tcr/markdown-corpus | |
| namo | ai4curation, artificial-intelligence, linkml... | 12 (details) | monarch-initiative/namo |
| json-flattener Python library for denormalizing nested dicts or json objects to tables and back |
dataframes, denormalization, linkml... | 11 (details) | cmungall/json-flattener |
| chem-dcat-ap This is an extension of the DCAT Application Profile PLUS LinkML schema. It is intended to be used b... |
linkml, linkml-schema, shacl... | 10 (details) | nfdi-de/chem-dcat-ap |
| dcat-ap-plus A domain-agnostic extension of the DCAT Application Profile. It allow providing domain-specific meta... |
dcat-ap, linkml, linkml-schema... | 9 (details) | nfdi-de/dcat-ap-plus |
| linkml-phenopackets EXPERIMENTAL rendering of phenopackets in linkml |
human-phenotype-ontology, linkml, metadata... | 9 (details) | cmungall/linkml-phenopackets |
| tc57cim The CIM information model represented as LinkML schemas. |
cim, documentation | 9 (details) | Netbeheer-Nederland/tc57cim |
| cgmes ENTSO-E CGMES profiles represented as LinkML schemas. |
cgmes, cim, documentation | 8 (details) | Netbeheer-Nederland/cgmes |
| define-json A metadata exchange model for Data Contracts and specs. Simplified successor to Define-XML that link... |
8 (details) | TeMeta/define-json | |
| rarelink RareLink - A REDCap-based framework linking international registries to FHIR and Phenopackets |
8 (details) | BIH-CEI/rarelink | |
| structsense | 8 (details) | sensein/structsense | |
| CultureMech Microbial Culture Media Knowledge Graph - Comprehensive collection of 10,000+ culture media recipes ... |
cultivation, growth-media, media... | 7 (details) | CultureBotAI/CultureMech |
| linkml-qudt Conversion of QUDT ontology to LinkML |
knowledge-graph, linkml, linkml-schema... | 7 (details) | vladistan/linkml-qudt |
| SemanticDataLink The Semantic Data Link repository hosts a Streamlit-based web application designed for managing and ... |
7 (details) | GX4FM-Base-X/SemanticDataLink | |
| DCAT-ap_as_LinkML_template | 6 (details) | HendrikBorgelt/DCAT-ap_as_LinkML_template | |
| gff-schema LinkML schema for GFF3, the Genome Feature Format |
bioinformatics, formats, genomics... | 6 (details) | biodatamodels/gff-schema |
| sample-annotator NMDC Sample Annotator |
annotator, environment-ontology, environmentontology... | 6 (details) | microbiomedata/sample-annotator |
| data-sheets-schema Datasheets for Datasets, as LinkML Schema |
5 (details) | bridge2ai/data-sheets-schema | |
| sepio-linkml LinkML-based specification of the SEPIO information model. |
5 (details) | sepio-framework/sepio-linkml | |
| cim-to-linkml Generates LinkML schemas for packages in the CIM information model. |
cim | 4 (details) | Netbeheer-Nederland/cim-to-linkml |
| gen-linkml-profile LinkML schema profiler. |
4 (details) | Netbeheer-Nederland/gen-linkml-profile | |
| linkml-activitypub LinkML Schema representation of ActivityPub |
4 (details) | p2p-ld/linkml-activitypub | |
| model-card-schema LinkML rendering of model cards |
ai, bridge2ai, deep-learning... | 4 (details) | bridge2ai/model-card-schema |
| nwb-linkml Translating NWB schema language to linkml |
4 (details) | p2p-ld/nwb-linkml | |
| pid4cat-model Handle-based PIDs with a rich LinkML metadata model for resources in catalysis (PID4Cat) |
handles, linkml, linkml-schema... | 4 (details) | nfdi4cat/pid4cat-model |
| bertron-schema LinkML schema for BERtron project. |
3 (details) | ber-data/bertron-schema | |
| include-linkml LinkML Schema for INCLUDE DCC |
3 (details) | include-dcc/include-linkml | |
| linkml-java LinkML runtime library for Java |
linkml, semantic-web | 3 (details) | gouttegd/linkml-java |
| miiid-schema A metadata schema for the Minimum Information about Intermicrobial Interaction Data (MIIID) using Li... |
fair-data, linkml, linkml-schema... | 3 (details) | FAIR-MI/miiid-schema |
| OpenCloning_LinkML A LinkML data model for OpenCloning |
3 (details) | OpenCloning/OpenCloning_LinkML | |
| PPODLinkML A LinkML representation of the PPOD schema |
3 (details) | adhollander/PPODLinkML | |
| external-metadata-awareness Tools for fetching and processing external schemas, ontologies and metadata records. Includes value ... |
2 (details) | microbiomedata/external-metadata-awareness | |
| htan2-data-model Data Model for HTAN Phase 2 |
2 (details) | ncihtan/htan2-data-model | |
| metadata-schema Metadata schema describing electrochemical data |
2 (details) | echemdb/metadata-schema | |
| monarch-provenance | 2 (details) | matentzn/monarch-provenance | |
| translator-ingests NCATS Biomedical Data Translator Data INGest and Operations WG consolidated data ingest pipeline pro... |
2 (details) | NCATSTranslator/translator-ingests | |
| bridge-schemas | 1 (details) | cmungall/bridge-schemas | |
| cas-tools Cell Annotation Schema Tools |
1 (details) | cellannotation/cas-tools | |
| comet | 1 (details) | cmungall/comet | |
| resume-model m30ml example project for rendering a resume |
1 (details) | goldfishlaser/resume-model | |
| SketchML :whale: SketchML - distributed Machine Leaning framework for Apache Flink :star: |
1 (details) | axenov/SketchML | |
| automate_mappings | 0 (details) | sierra-moxon/automate_mappings | |
| cell-annotation-schema A general, open-standard schema for cell annotations and related metadata. |
0 (details) | Cellular-Semantics/cell-annotation-schema | |
| DataMetadataWorkflowDocs Documentation for In2PrimateBrains Data and Metadata Workflows |
0 (details) | In2PrimateBrains/DataMetadataWorkflowDocs | |
| edd-schema | 0 (details) | cmungall/edd-schema | |
| in2pb-linkml-test | 0 (details) | ree-gupta/in2pb-linkml-test | |
| linkml-cfde EXPERIMENTAL rendering of Common Fund Data Ecocystem as LinkML |
0 (details) | cmungall/linkml-cfde | |
| linkml-playground linkml-playground |
0 (details) | manulera/linkml-playground | |
| LinkML-Project-Cookiecutter This project is from the LinkML tutorial at ISMB 2024 |
0 (details) | lmnb2055/LinkML-Project-Cookiecutter | |
| ontology_to_schema | 0 (details) | liuji1031/ontology_to_schema | |
| PCDMLinkML Portland Common Data Model, in LinkML |
0 (details) | multimeric/PCDMLinkML | |
| synbio-schema A schema for synthetic biology, inspired by IARPA FELIX |
0 (details) | iarpa-felix/synbio-schema | |
| vrs_linkml LinkML Version of the GA4GH Variation Representation Specification |
0 (details) | sierra-moxon/vrs_linkml |