LinkML Registry
For more information on LinkML:
Registry Entries
| Title | Topics | Stars | GitHub URL |
|---|---|---|---|
| biolink-model Schema and generated objects for biolink data model and upper ontology |
ai4curation, biolink, datamodel... | 231 (details) | biolink/biolink-model |
| sssom Simple Standard for Sharing Ontology Mappings |
linkml, mapping, mapping-commons... | 191 (details) | mapping-commons/sssom |
| DataHarmonizer A standardized browser-based spreadsheet editor and validator that can be run offline and locally, a... |
application, data, harmonization... | 122 (details) | cidgoh/DataHarmonizer |
| koza Data transformation framework for LinkML data models |
etl, knowledge-graph, koza... | 63 (details) | monarch-initiative/koza |
| sssom-py Python toolkit for SSSOM mapping format |
linkml, mappings, obofoundry... | 61 (details) | mapping-commons/sssom-py |
| semantic-sql SQL and SQLite builds of OWL ontologies |
ai4curation, linkml, monarchinitiative... | 60 (details) | INCATools/semantic-sql |
| nmdc-schema National Microbiome Data Collaborative (NMDC) unified data model |
ecoinformatics, fair-data, genomics... | 46 (details) | microbiomedata/nmdc-schema |
| semantic-llama A knowledge extraction tool that uses a large language model to extract semantic information from te... |
ai, knowledge-extraction, language-models... | 30 (details) | cmungall/semantic-llama |
| monarch-ingest Data ingest application for Monarch Initiative knowledge graph using Koza |
kgx, knowledge-graphs, linkml... | 24 (details) | monarch-initiative/monarch-ingest |
| chemrof Schema for chemistry ontology classes |
chebi, chemistry, linkml... | 23 (details) | chemkg/chemrof |
| kgcl Datamodel for KGCL (Knowledge Graph Change Language) |
kgcl, linkml, ontology-changes... | 22 (details) | INCATools/kgcl |
| py-typedlogic Logic plus python types |
answer-set-programming, clif, clingo... | 21 (details) | py-typedlogic/py-typedlogic |
| kgcl-rdflib Tools for working with KGCL |
diff, diffs, kg... | 20 (details) | INCATools/kgcl-rdflib |
| ccdhmodel CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH) |
google-sheets, linkml | 18 (details) | cancerDHC/ccdhmodel |
| monochrom Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species |
ai4curation, chromosomes, etl... | 16 (details) | monarch-initiative/monochrom |
| ghga-metadata-schema Metadata schema for the German Human Genome-Phenome Archive (GHGA) |
fega, ghga, linkml... | 15 (details) | ghga-de/ghga-metadata-schema |
| namo | ai4curation, artificial-intelligence, linkml... | 13 (details) | monarch-initiative/namo |
| chem-dcat-ap This is an extension of the DCAT Application Profile PLUS LinkML schema. It is intended to be used b... |
linkml, linkml-schema, shacl... | 12 (details) | nfdi-de/chem-dcat-ap |
| json-flattener Python library for denormalizing nested dicts or json objects to tables and back |
dataframes, denormalization, linkml... | 12 (details) | cmungall/json-flattener |
| dcat-ap-plus A domain-agnostic extension of the DCAT Application Profile. It allow providing domain-specific meta... |
dcat-ap, linkml, linkml-schema... | 11 (details) | nfdi-de/dcat-ap-plus |
| linkml-phenopackets EXPERIMENTAL rendering of phenopackets in linkml |
human-phenotype-ontology, linkml, metadata... | 11 (details) | cmungall/linkml-phenopackets |
| tc57cim The CIM information model represented as LinkML schemas. |
cim, documentation | 9 (details) | Netbeheer-Nederland/tc57cim |
| cgmes ENTSO-E CGMES profiles represented as LinkML schemas. |
cgmes, cim, documentation | 8 (details) | Netbeheer-Nederland/cgmes |
| CultureMech Microbial Culture Media Knowledge Graph - Comprehensive collection of 10,000+ culture media recipes ... |
cultivation, growth-media, media... | 8 (details) | CultureBotAI/CultureMech |
| linkml-qudt Conversion of QUDT ontology to LinkML |
knowledge-graph, linkml, linkml-schema... | 8 (details) | vladistan/linkml-qudt |
| gff-schema LinkML schema for GFF3, the Genome Feature Format |
bioinformatics, formats, genomics... | 7 (details) | biodatamodels/gff-schema |
| sample-annotator NMDC Sample Annotator |
annotator, environment-ontology, environmentontology... | 7 (details) | microbiomedata/sample-annotator |
| SemanticDataLink The Semantic Data Link repository hosts a Streamlit-based web application designed for managing and ... |
7 (details) | GX4FM-Base-X/SemanticDataLink | |
| DCAT-ap_as_LinkML_template | 6 (details) | HendrikBorgelt/DCAT-ap_as_LinkML_template | |
| data-sheets-schema Datasheets for Datasets, as LinkML Schema |
5 (details) | bridge2ai/data-sheets-schema | |
| linkml-java LinkML runtime library for Java |
linkml, semantic-web | 5 (details) | gouttegd/linkml-java |
| model-card-schema LinkML rendering of model cards |
ai, bridge2ai, deep-learning... | 5 (details) | bridge2ai/model-card-schema |
| pid4cat-model Handle-based PIDs with a rich LinkML metadata model for resources in catalysis (PID4Cat) |
handles, linkml, linkml-schema... | 5 (details) | nfdi4cat/pid4cat-model |
| prefixcommons-py Prefix commons python utlities |
5 (details) | prefixcommons/prefixcommons-py | |
| sepio-linkml LinkML-based specification of the SEPIO information model. |
5 (details) | sepio-framework/sepio-linkml | |
| cim-to-linkml Generates LinkML schemas for packages in the CIM information model. |
cim | 4 (details) | Netbeheer-Nederland/cim-to-linkml |
| gen-linkml-profile LinkML schema profiler. |
4 (details) | Netbeheer-Nederland/gen-linkml-profile | |
| linkml-activitypub LinkML Schema representation of ActivityPub |
4 (details) | p2p-ld/linkml-activitypub | |
| miiid-schema A metadata schema for the Minimum Information about Intermicrobial Interaction Data (MIIID) using Li... |
fair-data, linkml, linkml-schema... | 4 (details) | FAIR-MI/miiid-schema |
| nwb-linkml Translating NWB schema language to linkml |
4 (details) | p2p-ld/nwb-linkml | |
| bertron-schema LinkML schema for BERtron project. |
3 (details) | ber-data/bertron-schema | |
| DEPRECATED_agr_persistent_schema Repository using linkml templating system for generating Alliance of Genome Resources persistent dat... |
linkml | 3 (details) | alliance-genome/DEPRECATED_agr_persistent_schema |
| include-linkml LinkML Schema for INCLUDE DCC |
3 (details) | include-dcc/include-linkml | |
| linkml-pokemon Adaptation of Pokemon Knowledge Graph as LinkML Schema |
agentic-ai, knowledge-graph, linked-data... | 3 (details) | vladistan/linkml-pokemon |
| OpenCloning_LinkML A LinkML data model for OpenCloning |
3 (details) | OpenCloning/OpenCloning_LinkML | |
| PPODLinkML A LinkML representation of the PPOD schema |
3 (details) | adhollander/PPODLinkML | |
| metadata_converter Conversion of schemas/templates/metadata to biolinkml |
1 (details) | microbiomedata/metadata_converter | |
| LinkML-Project-Cookiecutter This project is from the LinkML tutorial at ISMB 2024 |
0 (details) | lmnb2055/LinkML-Project-Cookiecutter |