Class: Protein

URI: schema:Protein

Inheritance

• Thing
  • BioChemEntity
    • Protein

Slots

Name	Range	Cardinality	Description	Info
hasBioPolymerSequence	Text	0..*	None	.
hasRepresentation	NONE	0..*	None	.
associatedDisease	NONE	0..*	None	.
bioChemInteraction	BioChemEntity	0..*	None	.
bioChemSimilarity	BioChemEntity	0..*	None	.
biologicalRole	DefinedTerm	0..*	None	.
hasBioChemEntityPart	BioChemEntity	0..*	None	.
hasMolecularFunction	NONE	0..*	None	.
isEncodedByBioChemEntity	Gene	0..*	None	.
isInvolvedInBiologicalProcess	NONE	0..*	None	.
isLocatedInSubcellularLocation	NONE	0..*	None	.
isPartOfBioChemEntity	BioChemEntity	0..*	None	.
taxonomicRange	NONE	0..*	None	.
additionalType	URL	0..*	None	.
description	Text	0..*	None	.
disambiguatingDescription	Text	0..*	None	.
identifier	NONE	0..*	None	.
image	NONE	0..*	None	.
name	Text	0..*	None	.
sameAs	URL	0..*	None	.
alternateName	Text	0..*	None	.
mainEntityOfPage	NONE	0..*	None	.
potentialAction	Action	0..*	None	.
subjectOf	NONE	0..*	None	.
url	URL	0..*	None	.

Usages

Identifier and Mapping Information

LinkML Specification

Direct

name: Protein
comments:
- Protein is here used in its widest possible definition, as classes of amino acid
  based molecules. Amyloid-beta Protein in human (UniProt P05067), eukaryota (e.g.
  an OrthoDB group) or even a single molecule that one can point to are all of type
  schema:Protein. A protein can thus be a subclass of another protein, e.g. schema:Protein
  as a UniProt record can have multiple isoforms inside it which would also be schema:Protein.
  They can be imagined, synthetic, hypothetical or naturally occurring.
from_schema: http://w3id.og/linkml/schemaorg
is_a: BioChemEntity
slots:
- hasBioPolymerSequence
class_uri: schema:Protein

Induced

name: Protein
comments:
- Protein is here used in its widest possible definition, as classes of amino acid
  based molecules. Amyloid-beta Protein in human (UniProt P05067), eukaryota (e.g.
  an OrthoDB group) or even a single molecule that one can point to are all of type
  schema:Protein. A protein can thus be a subclass of another protein, e.g. schema:Protein
  as a UniProt record can have multiple isoforms inside it which would also be schema:Protein.
  They can be imagined, synthetic, hypothetical or naturally occurring.
from_schema: http://w3id.og/linkml/schemaorg
is_a: BioChemEntity
attributes:
  hasBioPolymerSequence:
    name: hasBioPolymerSequence
    comments:
    - A symbolic representation of a BioChemEnity. For example, a nucleotide sequence
      of a Gene or an amino acid sequence of a Protein.
    from_schema: http://w3id.og/linkml/schemaorg
    is_a: hasRepresentation
    slot_uri: schema:hasBioPolymerSequence
    multivalued: true
    alias: hasBioPolymerSequence
    owner: Protein
    range: Text
  hasRepresentation:
    name: hasRepresentation
    comments:
    - A common representation such as a protein sequence or chemical structure for
      this entity. For images use schema.org/image.
    from_schema: http://w3id.og/linkml/schemaorg
    slot_uri: schema:hasRepresentation
    multivalued: true
    alias: hasRepresentation
    owner: Protein
    any_of:
    - range: PropertyValue
    - range: Text
    - range: URL
  associatedDisease:
    name: associatedDisease
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: associatedDisease
    owner: Protein
    any_of:
    - range: MedicalCondition
    - range: PropertyValue
    - range: URL
  bioChemInteraction:
    name: bioChemInteraction
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: bioChemInteraction
    owner: Protein
    range: BioChemEntity
  bioChemSimilarity:
    name: bioChemSimilarity
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: bioChemSimilarity
    owner: Protein
    range: BioChemEntity
  biologicalRole:
    name: biologicalRole
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: biologicalRole
    owner: Protein
    range: DefinedTerm
  hasBioChemEntityPart:
    name: hasBioChemEntityPart
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: hasBioChemEntityPart
    owner: Protein
    range: BioChemEntity
  hasMolecularFunction:
    name: hasMolecularFunction
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: hasMolecularFunction
    owner: Protein
    any_of:
    - range: DefinedTerm
    - range: PropertyValue
    - range: URL
  isEncodedByBioChemEntity:
    name: isEncodedByBioChemEntity
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: isEncodedByBioChemEntity
    owner: Protein
    range: Gene
  isInvolvedInBiologicalProcess:
    name: isInvolvedInBiologicalProcess
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: isInvolvedInBiologicalProcess
    owner: Protein
    any_of:
    - range: DefinedTerm
    - range: PropertyValue
    - range: URL
  isLocatedInSubcellularLocation:
    name: isLocatedInSubcellularLocation
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: isLocatedInSubcellularLocation
    owner: Protein
    any_of:
    - range: DefinedTerm
    - range: PropertyValue
    - range: URL
  isPartOfBioChemEntity:
    name: isPartOfBioChemEntity
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: isPartOfBioChemEntity
    owner: Protein
    range: BioChemEntity
  taxonomicRange:
    name: taxonomicRange
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: taxonomicRange
    owner: Protein
    any_of:
    - range: DefinedTerm
    - range: Taxon
    - range: Text
    - range: URL
  additionalType:
    name: additionalType
    comments:
    - An additional type for the item, typically used for adding more specific types
      from external vocabularies in microdata syntax. This is a relationship between
      something and a class that the thing is in. In RDFa syntax, it is better to
      use the native RDFa syntax - the 'typeof' attribute - for multiple types. Schema.org
      tools may have only weaker understanding of extra types, in particular those
      defined externally.
    from_schema: http://w3id.og/linkml/schemaorg
    is_a: type
    slot_uri: schema:additionalType
    multivalued: true
    alias: additionalType
    owner: Protein
    range: URL
  description:
    name: description
    comments:
    - A description of the item.
    from_schema: http://w3id.og/linkml/schemaorg
    slot_uri: schema:description
    multivalued: true
    alias: description
    owner: Protein
    range: Text
  disambiguatingDescription:
    name: disambiguatingDescription
    comments:
    - A sub property of description. A short description of the item used to disambiguate
      from other, similar items. Information from other properties (in particular,
      name) may be necessary for the description to be useful for disambiguation.
    from_schema: http://w3id.og/linkml/schemaorg
    is_a: description
    slot_uri: schema:disambiguatingDescription
    multivalued: true
    alias: disambiguatingDescription
    owner: Protein
    range: Text
  identifier:
    name: identifier
    comments:
    - "The identifier property represents any kind of identifier for any kind of [[Thing]],\
      \ such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties\
      \ for representing many of these, either as textual strings or as URL (URI)\
      \ links. See [background notes](/docs/datamodel.html#identifierBg) for more\
      \ details.\n        "
    from_schema: http://w3id.og/linkml/schemaorg
    slot_uri: schema:identifier
    multivalued: true
    alias: identifier
    owner: Protein
    any_of:
    - range: PropertyValue
    - range: Text
    - range: URL
  image:
    name: image
    comments:
    - An image of the item. This can be a [[URL]] or a fully described [[ImageObject]].
    from_schema: http://w3id.og/linkml/schemaorg
    slot_uri: schema:image
    multivalued: true
    alias: image
    owner: Protein
    any_of:
    - range: ImageObject
    - range: URL
  name:
    name: name
    comments:
    - The name of the item.
    from_schema: http://w3id.og/linkml/schemaorg
    slot_uri: schema:name
    multivalued: true
    alias: name
    owner: Protein
    range: Text
  sameAs:
    name: sameAs
    comments:
    - URL of a reference Web page that unambiguously indicates the item's identity.
      E.g. the URL of the item's Wikipedia page, Wikidata entry, or official website.
    from_schema: http://w3id.og/linkml/schemaorg
    slot_uri: schema:sameAs
    multivalued: true
    alias: sameAs
    owner: Protein
    range: URL
  alternateName:
    name: alternateName
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: alternateName
    owner: Protein
    range: Text
  mainEntityOfPage:
    name: mainEntityOfPage
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: mainEntityOfPage
    owner: Protein
    any_of:
    - range: CreativeWork
    - range: URL
  potentialAction:
    name: potentialAction
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: potentialAction
    owner: Protein
    range: Action
  subjectOf:
    name: subjectOf
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: subjectOf
    owner: Protein
    any_of:
    - range: CreativeWork
    - range: Event
  url:
    name: url
    from_schema: http://w3id.og/linkml/schemaorg
    multivalued: true
    alias: url
    owner: Protein
    range: URL
class_uri: schema:Protein