LinkML-Store documentation Contents: About Installation Quickstart Data Model Adapters Indexing Metadata and Configuration Tutorials Tutorial: Using the Command Line Interface Top level command Inserting objects from a file Querying Describing the data set Facet Counts Search Indexing using an LLM (OPTIONAL) Schemas Configuration Files and Explicit Schemas Validation Tutorial: Using the Python API Create a Client object Attach and populate a DuckDB in-memory database Querying Faceting Plotting Complex objects Schemas Asserting schemas Other adapters Indexing How-To Guides How to use MongoDB with LinkML-Store Creating a client and attaching to a database Creating a collection Preparing data to load Inserting objects Queries Facet counts Creating an LLM embedding index How to use Semantic Search Background Obtaining upstream files Storing the JSON Creating an LLMIndexer Searching using the index How it works How to query the Monarch-KG How to query Solr using the Command Line Specifying a Solr backend on the command line: Using a configuration Search How to Check Referential Integrity Inserting invalid data Example: Storing an ontology How to index Phenopackets with LinkML-Store Use pystow to download phenopackets Creating a client and attaching to a database Creating a collection Inserting objects into the store Check contents Query faceting Semantic Search Semantic Search Validation Command Line Usage Reference linkml_store Indices and tables Index Module Index Search Page