Skip to content

Class: Sample

A sample is a limited quantity of something (e.g. an individual or set of individuals from a population, or a portion of a substance) to be used for testing, analysis, inspection, investigation, demonstration, or trial use.

URI: SIO:001050

classDiagram class Sample click Sample href "../Sample" Sample <|-- AirSample click AirSample href "../AirSample" Sample <|-- SoilSample click SoilSample href "../SoilSample" Sample : id Sample : latitude Sample : longitude Sample : sample_biome Sample --> "0..1" BiomeTypeEnum : sample_biome click BiomeTypeEnum href "../BiomeTypeEnum" Sample : sample_type Sample : species Sample --> "*" SpeciesEnum : species click SpeciesEnum href "../SpeciesEnum"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1
String		 The unique identifier for the biosample direct
latitude 0..1
Float		 Latitude is a geographic coordinate which refers to the angle from a point on... direct
longitude 0..1
Float		 Longitude is a geographic position that refers to the angle east or west of a... direct
species *
SpeciesEnum		 The species of micro organisms collected in the sample direct
sample_biome 0..1
BiomeTypeEnum		 The biome type of the biosample direct
sample_type 0..1
String		 The type of sample direct

Usages

used by used in type used
SampleCollection samples range Sample

Aliases

  • Biosample
  • Environmental Sample

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • KBase

  • nmdc

Schema Source

  • from schema: https://w3id.org/linkml/linkml-tutorial-2024

Mappings

Mapping Type Mapped Value
self SIO:001050
native linkml_tutorial_2024:Sample
exact SIO:001050

LinkML Source

Direct

name: Sample
id_prefixes:
- KBase
- nmdc
description: A sample is a limited quantity of something (e.g. an individual or set
  of individuals from a population,  or a portion of a substance) to be used for testing,
  analysis, inspection, investigation, demonstration,  or trial use.
from_schema: https://w3id.org/linkml/linkml-tutorial-2024
aliases:
- Biosample
- Environmental Sample
exact_mappings:
- SIO:001050
slots:
- id
- latitude
- longitude
- species
- sample_biome
- sample_type
class_uri: SIO:001050

Induced

name: Sample
id_prefixes:
- KBase
- nmdc
description: A sample is a limited quantity of something (e.g. an individual or set
  of individuals from a population,  or a portion of a substance) to be used for testing,
  analysis, inspection, investigation, demonstration,  or trial use.
from_schema: https://w3id.org/linkml/linkml-tutorial-2024
aliases:
- Biosample
- Environmental Sample
exact_mappings:
- SIO:001050
attributes:
  id:
    name: id
    description: The unique identifier for the biosample.
    from_schema: https://w3id.org/linkml/linkml-tutorial-2024
    rank: 1000
    identifier: true
    alias: id
    owner: Sample
    domain_of:
    - Sample
    range: string
    required: true
  latitude:
    name: latitude
    description: Latitude is a geographic coordinate which refers to the angle from
      a point on the Earth's surface to the  equatorial plane.
    from_schema: https://w3id.org/linkml/linkml-tutorial-2024
    rank: 1000
    slot_uri: schema:latitude
    alias: latitude
    owner: Sample
    domain_of:
    - Sample
    range: float
    minimum_value: -90
    maximum_value: 90
  longitude:
    name: longitude
    description: Longitude is a geographic position that refers to the angle east
      or west of a reference meridian between the  two geographical poles to another
      meridian that passes through an arbitrary point.
    from_schema: https://w3id.org/linkml/linkml-tutorial-2024
    rank: 1000
    slot_uri: schema:longitude
    alias: longitude
    owner: Sample
    domain_of:
    - Sample
    range: float
  species:
    name: species
    description: The species of micro organisms collected in the sample.
    from_schema: https://w3id.org/linkml/linkml-tutorial-2024
    rank: 1000
    multivalued: true
    alias: species
    owner: Sample
    domain_of:
    - Sample
    range: SpeciesEnum
  sample_biome:
    name: sample_biome
    description: The biome type of the biosample
    from_schema: https://w3id.org/linkml/linkml-tutorial-2024
    rank: 1000
    alias: sample_biome
    owner: Sample
    domain_of:
    - Sample
    range: BiomeTypeEnum
  sample_type:
    name: sample_type
    description: The type of sample.
    from_schema: https://w3id.org/linkml/linkml-tutorial-2024
    rank: 1000
    designates_type: true
    alias: sample_type
    owner: Sample
    domain_of:
    - Sample
    range: string
class_uri: SIO:001050