Enum: AminoAcidExtendedEnum
Extended amino acid alphabet with ambiguity codes and special characters
URI: valuesets:AminoAcidExtendedEnum
Permissible Values
| Value | Meaning | Description |
|---|---|---|
| A | CHEBI:16449 | |
| C | CHEBI:17561 | |
| D | CHEBI:17053 | |
| E | CHEBI:16015 | |
| F | CHEBI:17295 | |
| G | CHEBI:15428 | |
| H | CHEBI:15971 | |
| I | CHEBI:17191 | |
| K | CHEBI:18019 | |
| L | CHEBI:15603 | |
| M | CHEBI:16643 | |
| N | CHEBI:17196 | |
| P | CHEBI:17203 | |
| Q | CHEBI:18050 | |
| R | CHEBI:16467 | |
| S | CHEBI:17115 | |
| T | CHEBI:16857 | |
| V | CHEBI:16414 | |
| W | CHEBI:16828 | |
| Y | CHEBI:17895 | |
| B | None | |
| Z | None | |
| J | None | |
| X | None | |
| STOP | None | |
| GAP | None | |
| U | CHEBI:16633 | |
| O | CHEBI:21860 |
Slots
| Name | Description |
|---|---|
| amino_acid_extended | Extended amino acid alphabet with ambiguity codes and special characters |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/linkml/valuesets
LinkML Source
name: AminoAcidExtendedEnum
description: Extended amino acid alphabet with ambiguity codes and special characters
from_schema: https://w3id.org/linkml/valuesets
rank: 1000
permissible_values:
A:
text: A
meaning: CHEBI:16449
annotations:
three_letter:
tag: three_letter
value: Ala
title: Alanine
aliases:
- alanine
C:
text: C
meaning: CHEBI:17561
annotations:
three_letter:
tag: three_letter
value: Cys
title: Cysteine
aliases:
- L-cysteine
D:
text: D
meaning: CHEBI:17053
annotations:
three_letter:
tag: three_letter
value: Asp
title: Aspartic acid
aliases:
- L-aspartic acid
E:
text: E
meaning: CHEBI:16015
annotations:
three_letter:
tag: three_letter
value: Glu
title: Glutamic acid
aliases:
- L-glutamic acid
F:
text: F
meaning: CHEBI:17295
annotations:
three_letter:
tag: three_letter
value: Phe
title: Phenylalanine
aliases:
- L-phenylalanine
G:
text: G
meaning: CHEBI:15428
annotations:
three_letter:
tag: three_letter
value: Gly
title: Glycine
aliases:
- glycine
H:
text: H
meaning: CHEBI:15971
annotations:
three_letter:
tag: three_letter
value: His
title: Histidine
aliases:
- L-histidine
I:
text: I
meaning: CHEBI:17191
annotations:
three_letter:
tag: three_letter
value: Ile
title: Isoleucine
aliases:
- L-isoleucine
K:
text: K
meaning: CHEBI:18019
annotations:
three_letter:
tag: three_letter
value: Lys
title: Lysine
aliases:
- L-lysine
L:
text: L
meaning: CHEBI:15603
annotations:
three_letter:
tag: three_letter
value: Leu
title: Leucine
aliases:
- L-leucine
M:
text: M
meaning: CHEBI:16643
annotations:
three_letter:
tag: three_letter
value: Met
title: Methionine
aliases:
- L-methionine
N:
text: N
meaning: CHEBI:17196
annotations:
three_letter:
tag: three_letter
value: Asn
title: Asparagine
aliases:
- L-asparagine
P:
text: P
meaning: CHEBI:17203
annotations:
three_letter:
tag: three_letter
value: Pro
title: Proline
aliases:
- L-proline
Q:
text: Q
meaning: CHEBI:18050
annotations:
three_letter:
tag: three_letter
value: Gln
title: Glutamine
aliases:
- L-glutamine
R:
text: R
meaning: CHEBI:16467
annotations:
three_letter:
tag: three_letter
value: Arg
title: Arginine
aliases:
- L-arginine
S:
text: S
meaning: CHEBI:17115
annotations:
three_letter:
tag: three_letter
value: Ser
title: Serine
aliases:
- L-serine
T:
text: T
meaning: CHEBI:16857
annotations:
three_letter:
tag: three_letter
value: Thr
title: Threonine
aliases:
- L-threonine
V:
text: V
meaning: CHEBI:16414
annotations:
three_letter:
tag: three_letter
value: Val
title: Valine
aliases:
- L-valine
W:
text: W
meaning: CHEBI:16828
annotations:
three_letter:
tag: three_letter
value: Trp
title: Tryptophan
aliases:
- L-tryptophan
Y:
text: Y
meaning: CHEBI:17895
annotations:
three_letter:
tag: three_letter
value: Tyr
title: Tyrosine
aliases:
- L-tyrosine
B:
text: B
annotations:
three_letter:
tag: three_letter
value: Asx
represents:
tag: represents
value: D,N
ambiguity:
tag: ambiguity
value: 'true'
title: Aspartic acid
aliases:
- L-aspartic acid or Asparagine (D or N)
Z:
text: Z
annotations:
three_letter:
tag: three_letter
value: Glx
represents:
tag: represents
value: E,Q
ambiguity:
tag: ambiguity
value: 'true'
title: Glutamic acid
aliases:
- L-glutamic acid or Glutamine (E or Q)
J:
text: J
annotations:
three_letter:
tag: three_letter
value: Xle
represents:
tag: represents
value: L,I
ambiguity:
tag: ambiguity
value: 'true'
title: Leucine
aliases:
- L-leucine or Isoleucine (L or I)
X:
text: X
annotations:
three_letter:
tag: three_letter
value: Xaa
represents:
tag: represents
value: any
ambiguity:
tag: ambiguity
value: 'true'
title: Any amino acid
STOP:
text: STOP
annotations:
symbol:
tag: symbol
value: '*'
three_letter:
tag: three_letter
value: Ter
represents:
tag: represents
value: stop codon
title: Translation stop/termination
GAP:
text: GAP
annotations:
symbol:
tag: symbol
value: '-'
represents:
tag: represents
value: gap
title: Gap character
U:
text: U
meaning: CHEBI:16633
annotations:
three_letter:
tag: three_letter
value: Sec
special:
tag: special
value: 21st amino acid
codon:
tag: codon
value: UGA with SECIS element
title: Selenocysteine
aliases:
- L-selenocysteine
O:
text: O
meaning: CHEBI:21860
annotations:
three_letter:
tag: three_letter
value: Pyl
special:
tag: special
value: 22nd amino acid
codon:
tag: codon
value: UAG in certain archaea/bacteria
title: Pyrrolysine (22nd amino acid)
aliases:
- L-pyrrolysine