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Enum: CdsPhaseType

For features of type CDS (coding sequence), the phase indicates where the feature begins with reference to the reading frame. The phase is one of the integers 0, 1, or 2, indicating the number of bases that should be removed from the beginning of this feature to reach the first base of the next codon.

URI: valuesets:CdsPhaseType

Permissible Values

Value Meaning Description
PHASE_0 None Zero bases from reading frame to feature start
PHASE_1 None One base from reading frame to feature start
PHASE_2 None Two bases from reading frame to feature start

Slots

Name Description
cds_phase For features of type CDS (coding sequence), the phase indicates where the fea...

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/linkml/valuesets

LinkML Source

name: CdsPhaseType
description: For features of type CDS (coding sequence), the phase indicates where
  the feature begins with reference to the reading frame. The phase is one of the
  integers 0, 1, or 2, indicating the number of bases that should be removed from
  the beginning of this feature to reach the first base of the next codon.
from_schema: https://w3id.org/linkml/valuesets
rank: 1000
permissible_values:
  PHASE_0:
    text: PHASE_0
    description: Zero bases from reading frame to feature start.
    title: '0'
  PHASE_1:
    text: PHASE_1
    description: One base from reading frame to feature start.
    title: '1'
  PHASE_2:
    text: PHASE_2
    description: Two bases from reading frame to feature start.
    title: '2'