Enum: CellBasedAssayEnum
Cell-based assays including viability, proliferation, and functional assays
URI: valuesets:CellBasedAssayEnum
Permissible Values
| Value | Meaning | Description |
|---|---|---|
| CELL_VIABILITY_ASSAY | BAO:0003009 | Cell viability measurement assay |
| CELL_PROLIFERATION_ASSAY | BAO:0002100 | Cell proliferation measurement |
| CELL_COUNT | BAO:0002097 | Cell counting assay |
| ALAMAR_BLUE_ABSORBANCE | None | AlamarBlue absorbance assay (2D) |
| ALAMAR_BLUE_FLUORESCENCE | None | AlamarBlue fluorescence assay (2D) |
| THREE_D_MICROTISSUE_VIABILITY | None | 3D microtissue viability assay |
| BRDU_PROLIFERATION | OBI:0001330 | BrdU incorporation proliferation assay |
| EDU_PROLIFERATION | None | EdU incorporation proliferation assay |
| ATPASE_ACTIVITY_ASSAY | None | ATPase activity measurement |
| CAMP_GLO_ASSAY | None | cAMP-Glo Max Assay |
| FLOW_CYTOMETRY | OBI:0000916 | Flow cytometry analysis |
| ELISA | OBI:0000661 | Enzyme-linked immunosorbent assay |
| SANDWICH_ELISA | None | Sandwich ELISA |
| WESTERN_BLOT | OBI:0000714 | Western blot analysis |
| IMMUNOASSAY | OBI:0000717 | General immunoassay |
| PCR | OBI:0000415 | Polymerase chain reaction |
| QPCR | OBI:0000893 | Quantitative PCR |
| NANOSTRING_NCOUNTER | None | NanoString nCounter Analysis System |
| MULTI_ELECTRODE_ARRAY | OBI:0002187 | Multi-electrode array recording |
| CURRENT_CLAMP_ASSAY | None | Current clamp electrophysiology |
| WHOLE_CELL_PATCH_CLAMP | OBI:0002179 | Whole-cell patch clamp recording |
| LOCAL_FIELD_POTENTIAL | None | Local field potential recording |
| LONG_TERM_POTENTIATION | None | Long-term potentiation assay |
| MIGRATION_ASSAY | BAO:0002110 | Cell migration assay |
| IN_VITRO_TUMORIGENESIS | None | In vitro tumorigenesis assay |
| IN_VIVO_TUMOR_GROWTH | None | In vivo tumor growth assay |
| IN_VIVO_PDX_VIABILITY | None | In vivo patient-derived xenograft viability |
| MATRIGEL_TUMORIGENESIS | None | Matrigel-based tumorigenesis assay |
| HIGH_CONTENT_SCREEN | BAO:0000514 | High content screening assay |
| CELL_PAINTING | BAO:0020000 | Cell painting morphological profiling |
| COMPOUND_SCREEN | None | Compound library screening |
| COMBINATION_SCREEN | None | Drug combination screening |
| SMALL_MOLECULE_LIBRARY_SCREEN | None | Small molecule library screen |
| REPORTER_GENE_ASSAY | BAO:0000098 | Reporter gene assay |
| MASSIVELY_PARALLEL_REPORTER_ASSAY | None | Massively parallel reporter assay |
| SPLIT_GFP_ASSAY | None | Split-GFP protein interaction assay |
| FOCUS_FORMING_ASSAY | None | Focus forming assay |
| OXYGEN_CONSUMPTION_ASSAY | BAO:0003028 | Oxygen consumption rate measurement |
| ROS_ASSAY | None | Reactive oxygen species assay |
| CALCIUM_RETENTION_ASSAY | None | Calcium retention capacity assay |
| TRANS_ENDOTHELIAL_RESISTANCE | None | Trans-endothelial electrical resistance measurement |
| CELL_PERMEABILITY_ASSAY | None | Cell permeability assay |
| PHARMACOKINETIC_ADME | None | Pharmacokinetic ADME assay |
| ARRAY | None | General array-based assay |
| HPLC | CHMO:0001009 | High-performance liquid chromatography |
| ELECTROCHEMILUMINESCENCE | None | Electrochemiluminescence detection |
| STR_PROFILE | None | Short tandem repeat profiling |
| TIDE | None | Tracking of Indels by Decomposition |
| SURVIVAL_ASSAY | None | Cell or organism survival assay |
Slots
| Name | Description |
|---|---|
| cell_based_assay | Cell-based assay type |
See Also
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/valuesets
LinkML Source
name: CellBasedAssayEnum
instantiates:
- valuesets_meta:ValueSetEnumDefinition
description: Cell-based assays including viability, proliferation, and functional
assays
title: Cell-Based Assay Types
from_schema: https://w3id.org/valuesets
see_also:
- https://nf-osi.github.io/nf-metadata-dictionary/
contributors:
- orcid:0000-0002-6601-2165
- https://github.com/anthropics/claude-code
status: DRAFT
rank: 1000
permissible_values:
CELL_VIABILITY_ASSAY:
text: CELL_VIABILITY_ASSAY
description: Cell viability measurement assay
meaning: BAO:0003009
CELL_PROLIFERATION_ASSAY:
text: CELL_PROLIFERATION_ASSAY
description: Cell proliferation measurement
meaning: BAO:0002100
CELL_COUNT:
text: CELL_COUNT
description: Cell counting assay
meaning: BAO:0002097
ALAMAR_BLUE_ABSORBANCE:
text: ALAMAR_BLUE_ABSORBANCE
description: AlamarBlue absorbance assay (2D)
aliases:
- 2D AlamarBlue absorbance
ALAMAR_BLUE_FLUORESCENCE:
text: ALAMAR_BLUE_FLUORESCENCE
description: AlamarBlue fluorescence assay (2D)
aliases:
- 2D AlamarBlue fluorescence
THREE_D_MICROTISSUE_VIABILITY:
text: THREE_D_MICROTISSUE_VIABILITY
description: 3D microtissue viability assay
aliases:
- 3D microtissue viability
BRDU_PROLIFERATION:
text: BRDU_PROLIFERATION
description: BrdU incorporation proliferation assay
meaning: OBI:0001330
aliases:
- BrdU proliferation assay
EDU_PROLIFERATION:
text: EDU_PROLIFERATION
description: EdU incorporation proliferation assay
aliases:
- EdU proliferation assay
ATPASE_ACTIVITY_ASSAY:
text: ATPASE_ACTIVITY_ASSAY
description: ATPase activity measurement
CAMP_GLO_ASSAY:
text: CAMP_GLO_ASSAY
description: cAMP-Glo Max Assay
aliases:
- cAMP-Glo Max Assay
FLOW_CYTOMETRY:
text: FLOW_CYTOMETRY
description: Flow cytometry analysis
meaning: OBI:0000916
ELISA:
text: ELISA
description: Enzyme-linked immunosorbent assay
meaning: OBI:0000661
SANDWICH_ELISA:
text: SANDWICH_ELISA
description: Sandwich ELISA
WESTERN_BLOT:
text: WESTERN_BLOT
description: Western blot analysis
meaning: OBI:0000714
IMMUNOASSAY:
text: IMMUNOASSAY
description: General immunoassay
meaning: OBI:0000717
PCR:
text: PCR
description: Polymerase chain reaction
meaning: OBI:0000415
aliases:
- polymerase chain reaction
QPCR:
text: QPCR
description: Quantitative PCR
meaning: OBI:0000893
aliases:
- quantitative PCR
NANOSTRING_NCOUNTER:
text: NANOSTRING_NCOUNTER
description: NanoString nCounter Analysis System
MULTI_ELECTRODE_ARRAY:
text: MULTI_ELECTRODE_ARRAY
description: Multi-electrode array recording
meaning: OBI:0002187
CURRENT_CLAMP_ASSAY:
text: CURRENT_CLAMP_ASSAY
description: Current clamp electrophysiology
WHOLE_CELL_PATCH_CLAMP:
text: WHOLE_CELL_PATCH_CLAMP
description: Whole-cell patch clamp recording
meaning: OBI:0002179
LOCAL_FIELD_POTENTIAL:
text: LOCAL_FIELD_POTENTIAL
description: Local field potential recording
LONG_TERM_POTENTIATION:
text: LONG_TERM_POTENTIATION
description: Long-term potentiation assay
MIGRATION_ASSAY:
text: MIGRATION_ASSAY
description: Cell migration assay
meaning: BAO:0002110
IN_VITRO_TUMORIGENESIS:
text: IN_VITRO_TUMORIGENESIS
description: In vitro tumorigenesis assay
IN_VIVO_TUMOR_GROWTH:
text: IN_VIVO_TUMOR_GROWTH
description: In vivo tumor growth assay
IN_VIVO_PDX_VIABILITY:
text: IN_VIVO_PDX_VIABILITY
description: In vivo patient-derived xenograft viability
MATRIGEL_TUMORIGENESIS:
text: MATRIGEL_TUMORIGENESIS
description: Matrigel-based tumorigenesis assay
aliases:
- Matrigel-based tumorigenesis assay
HIGH_CONTENT_SCREEN:
text: HIGH_CONTENT_SCREEN
description: High content screening assay
meaning: BAO:0000514
CELL_PAINTING:
text: CELL_PAINTING
description: Cell painting morphological profiling
meaning: BAO:0020000
COMPOUND_SCREEN:
text: COMPOUND_SCREEN
description: Compound library screening
COMBINATION_SCREEN:
text: COMBINATION_SCREEN
description: Drug combination screening
SMALL_MOLECULE_LIBRARY_SCREEN:
text: SMALL_MOLECULE_LIBRARY_SCREEN
description: Small molecule library screen
REPORTER_GENE_ASSAY:
text: REPORTER_GENE_ASSAY
description: Reporter gene assay
meaning: BAO:0000098
MASSIVELY_PARALLEL_REPORTER_ASSAY:
text: MASSIVELY_PARALLEL_REPORTER_ASSAY
description: Massively parallel reporter assay
aliases:
- MPRA
SPLIT_GFP_ASSAY:
text: SPLIT_GFP_ASSAY
description: Split-GFP protein interaction assay
aliases:
- split-GFP assay
FOCUS_FORMING_ASSAY:
text: FOCUS_FORMING_ASSAY
description: Focus forming assay
OXYGEN_CONSUMPTION_ASSAY:
text: OXYGEN_CONSUMPTION_ASSAY
description: Oxygen consumption rate measurement
meaning: BAO:0003028
ROS_ASSAY:
text: ROS_ASSAY
description: Reactive oxygen species assay
aliases:
- reactive oxygen species assay
CALCIUM_RETENTION_ASSAY:
text: CALCIUM_RETENTION_ASSAY
description: Calcium retention capacity assay
TRANS_ENDOTHELIAL_RESISTANCE:
text: TRANS_ENDOTHELIAL_RESISTANCE
description: Trans-endothelial electrical resistance measurement
aliases:
- trans-endothelial electrical resistance
CELL_PERMEABILITY_ASSAY:
text: CELL_PERMEABILITY_ASSAY
description: Cell permeability assay
PHARMACOKINETIC_ADME:
text: PHARMACOKINETIC_ADME
description: Pharmacokinetic ADME assay
aliases:
- pharmocokinetic ADME assay
ARRAY:
text: ARRAY
description: General array-based assay
HPLC:
text: HPLC
description: High-performance liquid chromatography
meaning: CHMO:0001009
ELECTROCHEMILUMINESCENCE:
text: ELECTROCHEMILUMINESCENCE
description: Electrochemiluminescence detection
STR_PROFILE:
text: STR_PROFILE
description: Short tandem repeat profiling
TIDE:
text: TIDE
description: Tracking of Indels by Decomposition
SURVIVAL_ASSAY:
text: SURVIVAL_ASSAY
description: Cell or organism survival assay