Enum: GOElectronicMethods

Electronic annotation methods used in Gene Ontology, identified by GO_REF codes

Permissible Values

Value	Meaning	Description
INTERPRO2GO	GO_REF:0000002
EC2GO	GO_REF:0000003
UNIPROTKB_KW2GO	GO_REF:0000004
UNIPROTKB_SUBCELL2GO	GO_REF:0000023
HAMAP_RULE2GO	GO_REF:0000020
UNIPATHWAY2GO	GO_REF:0000041
UNIRULE2GO	GO_REF:0000104
RHEA2GO	GO_REF:0000116
ENSEMBL_COMPARA	GO_REF:0000107
PANTHER	GO_REF:0000033
REACTOME	GO_REF:0000018
RFAM2GO	GO_REF:0000115
DICTYBASE	GO_REF:0000015
MGI	GO_REF:0000096
ZFIN	GO_REF:0000031
FLYBASE	GO_REF:0000047
WORMBASE	GO_REF:0000003
SGD	GO_REF:0000100
POMBASE	GO_REF:0000024
METACYC2GO	GO_REF:0000112

Slots

Name	Description
go_electronic_methods	Electronic annotation methods used in Gene Ontology, identified by GO_REF cod...

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/valuesets

LinkML Source

name: GOElectronicMethods
description: Electronic annotation methods used in Gene Ontology, identified by GO_REF
  codes
from_schema: https://w3id.org/linkml/valuesets
rank: 1000
permissible_values:
  INTERPRO2GO:
    text: INTERPRO2GO
    meaning: GO_REF:0000002
    title: Gene Ontology annotation based on InterPro classification
  EC2GO:
    text: EC2GO
    meaning: GO_REF:0000003
    title: Gene Ontology annotation based on Enzyme Commission mapping
  UNIPROTKB_KW2GO:
    text: UNIPROTKB_KW2GO
    meaning: GO_REF:0000004
    title: Gene Ontology annotation based on UniProtKB keywords
  UNIPROTKB_SUBCELL2GO:
    text: UNIPROTKB_SUBCELL2GO
    meaning: GO_REF:0000023
    title: Gene Ontology annotation based on UniProtKB Subcellular Location vocabulary
  HAMAP_RULE2GO:
    text: HAMAP_RULE2GO
    meaning: GO_REF:0000020
    title: Gene Ontology annotation based on HAMAP family rules
  UNIPATHWAY2GO:
    text: UNIPATHWAY2GO
    meaning: GO_REF:0000041
    title: Gene Ontology annotation based on UniPathway vocabulary
  UNIRULE2GO:
    text: UNIRULE2GO
    meaning: GO_REF:0000104
    title: Gene Ontology annotation based on UniRule rules
  RHEA2GO:
    text: RHEA2GO
    meaning: GO_REF:0000116
    title: Gene Ontology annotation based on Rhea mapping
  ENSEMBL_COMPARA:
    text: ENSEMBL_COMPARA
    meaning: GO_REF:0000107
    title: Gene Ontology annotation based on Ensembl Compara orthology
  PANTHER:
    text: PANTHER
    meaning: GO_REF:0000033
    title: Gene Ontology annotation based on PANTHER phylogenetic trees
  REACTOME:
    text: REACTOME
    meaning: GO_REF:0000018
    title: Gene Ontology annotation based on Reactome pathways
  RFAM2GO:
    text: RFAM2GO
    meaning: GO_REF:0000115
    title: Gene Ontology annotation based on Rfam classification
  DICTYBASE:
    text: DICTYBASE
    meaning: GO_REF:0000015
    title: Gene Ontology annotation by DictyBase
  MGI:
    text: MGI
    meaning: GO_REF:0000096
    title: Gene Ontology annotation by Mouse Genome Informatics
  ZFIN:
    text: ZFIN
    meaning: GO_REF:0000031
    title: Gene Ontology annotation by Zebrafish Information Network
  FLYBASE:
    text: FLYBASE
    meaning: GO_REF:0000047
    title: Gene Ontology annotation by FlyBase
  WORMBASE:
    text: WORMBASE
    meaning: GO_REF:0000003
    title: Gene Ontology annotation by WormBase
  SGD:
    text: SGD
    meaning: GO_REF:0000100
    title: Gene Ontology annotation by Saccharomyces Genome Database
  POMBASE:
    text: POMBASE
    meaning: GO_REF:0000024
    title: Gene Ontology annotation by PomBase
  METACYC2GO:
    text: METACYC2GO
    meaning: GO_REF:0000112
    title: Gene Ontology annotation based on MetaCyc pathways