Enum: GOEvidenceCode

Gene Ontology evidence codes mapped to Evidence and Conclusion Ontology (ECO) terms

URI: valuesets:GOEvidenceCode

Permissible Values

Value	Meaning	Description
EXP	ECO:0000269
IDA	ECO:0000314
IPI	ECO:0000353
IMP	ECO:0000315
IGI	ECO:0000316
IEP	ECO:0000270
HTP	ECO:0006056
HDA	ECO:0007005
HMP	ECO:0007001
HGI	ECO:0007003
HEP	ECO:0007007
IBA	ECO:0000318
IBD	ECO:0000319
IKR	ECO:0000320
IRD	ECO:0000321
ISS	ECO:0000250
ISO	ECO:0000266
ISA	ECO:0000247
ISM	ECO:0000255
IGC	ECO:0000317
RCA	ECO:0000245
TAS	ECO:0000304
NAS	ECO:0000303
IC	ECO:0000305
ND	ECO:0000307
IEA	ECO:0000501

Slots

Name	Description
go_evidence	Gene Ontology evidence codes mapped to Evidence and Conclusion Ontology (ECO)...

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/linkml/valuesets

LinkML Source

name: GOEvidenceCode
description: Gene Ontology evidence codes mapped to Evidence and Conclusion Ontology
  (ECO) terms
from_schema: https://w3id.org/linkml/valuesets
rank: 1000
permissible_values:
  EXP:
    text: EXP
    meaning: ECO:0000269
    title: Inferred from Experiment
    aliases:
    - experimental evidence used in manual assertion
  IDA:
    text: IDA
    meaning: ECO:0000314
    title: Inferred from Direct Assay
    aliases:
    - direct assay evidence used in manual assertion
  IPI:
    text: IPI
    meaning: ECO:0000353
    title: Inferred from Physical Interaction
    aliases:
    - physical interaction evidence used in manual assertion
  IMP:
    text: IMP
    meaning: ECO:0000315
    title: Inferred from Mutant Phenotype
    aliases:
    - mutant phenotype evidence used in manual assertion
  IGI:
    text: IGI
    meaning: ECO:0000316
    title: Inferred from Genetic Interaction
    aliases:
    - genetic interaction evidence used in manual assertion
  IEP:
    text: IEP
    meaning: ECO:0000270
    title: Inferred from Expression Pattern
    aliases:
    - expression pattern evidence used in manual assertion
  HTP:
    text: HTP
    meaning: ECO:0006056
    title: Inferred from High Throughput Experiment
    aliases:
    - high throughput evidence used in manual assertion
  HDA:
    text: HDA
    meaning: ECO:0007005
    title: Inferred from High Throughput Direct Assay
    aliases:
    - high throughput direct assay evidence used in manual assertion
  HMP:
    text: HMP
    meaning: ECO:0007001
    title: Inferred from High Throughput Mutant Phenotype
    aliases:
    - high throughput mutant phenotypic evidence used in manual assertion
  HGI:
    text: HGI
    meaning: ECO:0007003
    title: Inferred from High Throughput Genetic Interaction
    aliases:
    - high throughput genetic interaction phenotypic evidence used in manual assertion
  HEP:
    text: HEP
    meaning: ECO:0007007
    title: Inferred from High Throughput Expression Pattern
    aliases:
    - high throughput expression pattern evidence used in manual assertion
  IBA:
    text: IBA
    meaning: ECO:0000318
    title: Inferred from Biological aspect of Ancestor
    aliases:
    - biological aspect of ancestor evidence used in manual assertion
  IBD:
    text: IBD
    meaning: ECO:0000319
    title: Inferred from Biological aspect of Descendant
    aliases:
    - biological aspect of descendant evidence used in manual assertion
  IKR:
    text: IKR
    meaning: ECO:0000320
    title: Inferred from Key Residues
    aliases:
    - phylogenetic determination of loss of key residues evidence used in manual assertion
  IRD:
    text: IRD
    meaning: ECO:0000321
    title: Inferred from Rapid Divergence
    aliases:
    - rapid divergence from ancestral sequence evidence used in manual assertion
  ISS:
    text: ISS
    meaning: ECO:0000250
    title: Inferred from Sequence or structural Similarity
    aliases:
    - sequence similarity evidence used in manual assertion
  ISO:
    text: ISO
    meaning: ECO:0000266
    title: Inferred from Sequence Orthology
    aliases:
    - sequence orthology evidence used in manual assertion
  ISA:
    text: ISA
    meaning: ECO:0000247
    title: Inferred from Sequence Alignment
    aliases:
    - sequence alignment evidence used in manual assertion
  ISM:
    text: ISM
    meaning: ECO:0000255
    title: Inferred from Sequence Model
    aliases:
    - match to sequence model evidence used in manual assertion
  IGC:
    text: IGC
    meaning: ECO:0000317
    title: Inferred from Genomic Context
    aliases:
    - genomic context evidence used in manual assertion
  RCA:
    text: RCA
    meaning: ECO:0000245
    title: Inferred from Reviewed Computational Analysis
    aliases:
    - automatically integrated combinatorial evidence used in manual assertion
  TAS:
    text: TAS
    meaning: ECO:0000304
    title: Traceable Author Statement
    aliases:
    - author statement supported by traceable reference used in manual assertion
  NAS:
    text: NAS
    meaning: ECO:0000303
    title: Non-traceable Author Statement
    aliases:
    - author statement without traceable support used in manual assertion
  IC:
    text: IC
    meaning: ECO:0000305
    title: Inferred by Curator
    aliases:
    - curator inference used in manual assertion
  ND:
    text: ND
    meaning: ECO:0000307
    title: No biological Data available
    aliases:
    - no evidence data found used in manual assertion
  IEA:
    text: IEA
    meaning: ECO:0000501
    title: Inferred from Electronic Annotation
    aliases:
    - evidence used in automatic assertion