Enum: GeneticCodeTable

NCBI genetic code translation tables for different organisms.

Table 1 is the universal genetic code used by most organisms.

Permissible Values

Value	Meaning	Description
TABLE_1	None	Standard genetic code (universal)
TABLE_2	None	Vertebrate mitochondrial code
TABLE_3	None	Yeast mitochondrial code
TABLE_4	None	Mold, protozoan, coelenterate mitochondrial
TABLE_5	None	Invertebrate mitochondrial code
TABLE_6	None	Ciliate, dasycladacean, hexamita nuclear code
TABLE_9	None	Echinoderm and flatworm mitochondrial code
TABLE_10	None	Euplotid nuclear code
TABLE_11	None	Bacterial, archaeal and plant plastid code
TABLE_12	None	Alternative yeast nuclear code
TABLE_13	None	Ascidian mitochondrial code
TABLE_14	None	Alternative flatworm mitochondrial code
TABLE_16	None	Chlorophycean mitochondrial code
TABLE_21	None	Trematode mitochondrial code
TABLE_22	None	Scenedesmus obliquus mitochondrial code
TABLE_23	None	Thraustochytrium mitochondrial code
TABLE_24	None	Rhabdopleuridae mitochondrial code
TABLE_25	None	Candidate division SR1 and gracilibacteria code
TABLE_26	None	Pachysolen tannophilus nuclear code
TABLE_27	None	Karyorelict nuclear code
TABLE_28	None	Condylostoma nuclear code
TABLE_29	None	Mesodinium nuclear code
TABLE_30	None	Peritrich nuclear code
TABLE_31	None	Blastocrithidia nuclear code

Slots

Name	Description
genetic_code_table	NCBI genetic code translation tables for different organisms

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/valuesets

LinkML Source

name: GeneticCodeTable
description: 'NCBI genetic code translation tables for different organisms.

  Table 1 is the universal genetic code used by most organisms.'
title: NCBI Genetic Code Translation Tables
from_schema: https://w3id.org/linkml/valuesets
rank: 1000
permissible_values:
  TABLE_1:
    text: TABLE_1
    description: Standard genetic code (universal)
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 1
      name:
        tag: name
        value: Standard
  TABLE_2:
    text: TABLE_2
    description: Vertebrate mitochondrial code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 2
      name:
        tag: name
        value: Vertebrate Mitochondrial
  TABLE_3:
    text: TABLE_3
    description: Yeast mitochondrial code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 3
      name:
        tag: name
        value: Yeast Mitochondrial
  TABLE_4:
    text: TABLE_4
    description: Mold, protozoan, coelenterate mitochondrial
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 4
      name:
        tag: name
        value: Mold Mitochondrial
  TABLE_5:
    text: TABLE_5
    description: Invertebrate mitochondrial code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 5
      name:
        tag: name
        value: Invertebrate Mitochondrial
  TABLE_6:
    text: TABLE_6
    description: Ciliate, dasycladacean, hexamita nuclear code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 6
      name:
        tag: name
        value: Ciliate Nuclear
  TABLE_9:
    text: TABLE_9
    description: Echinoderm and flatworm mitochondrial code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 9
      name:
        tag: name
        value: Echinoderm Mitochondrial
  TABLE_10:
    text: TABLE_10
    description: Euplotid nuclear code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 10
      name:
        tag: name
        value: Euplotid Nuclear
  TABLE_11:
    text: TABLE_11
    description: Bacterial, archaeal and plant plastid code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 11
      name:
        tag: name
        value: Bacterial
  TABLE_12:
    text: TABLE_12
    description: Alternative yeast nuclear code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 12
      name:
        tag: name
        value: Alternative Yeast Nuclear
  TABLE_13:
    text: TABLE_13
    description: Ascidian mitochondrial code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 13
      name:
        tag: name
        value: Ascidian Mitochondrial
  TABLE_14:
    text: TABLE_14
    description: Alternative flatworm mitochondrial code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 14
      name:
        tag: name
        value: Alternative Flatworm Mitochondrial
  TABLE_16:
    text: TABLE_16
    description: Chlorophycean mitochondrial code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 16
      name:
        tag: name
        value: Chlorophycean Mitochondrial
  TABLE_21:
    text: TABLE_21
    description: Trematode mitochondrial code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 21
      name:
        tag: name
        value: Trematode Mitochondrial
  TABLE_22:
    text: TABLE_22
    description: Scenedesmus obliquus mitochondrial code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 22
      name:
        tag: name
        value: Scenedesmus Mitochondrial
  TABLE_23:
    text: TABLE_23
    description: Thraustochytrium mitochondrial code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 23
      name:
        tag: name
        value: Thraustochytrium Mitochondrial
  TABLE_24:
    text: TABLE_24
    description: Rhabdopleuridae mitochondrial code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 24
      name:
        tag: name
        value: Rhabdopleuridae Mitochondrial
  TABLE_25:
    text: TABLE_25
    description: Candidate division SR1 and gracilibacteria code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 25
      name:
        tag: name
        value: Candidate Division SR1
  TABLE_26:
    text: TABLE_26
    description: Pachysolen tannophilus nuclear code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 26
      name:
        tag: name
        value: Pachysolen Nuclear
  TABLE_27:
    text: TABLE_27
    description: Karyorelict nuclear code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 27
      name:
        tag: name
        value: Karyorelict Nuclear
  TABLE_28:
    text: TABLE_28
    description: Condylostoma nuclear code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 28
      name:
        tag: name
        value: Condylostoma Nuclear
  TABLE_29:
    text: TABLE_29
    description: Mesodinium nuclear code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 29
      name:
        tag: name
        value: Mesodinium Nuclear
  TABLE_30:
    text: TABLE_30
    description: Peritrich nuclear code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 30
      name:
        tag: name
        value: Peritrich Nuclear
  TABLE_31:
    text: TABLE_31
    description: Blastocrithidia nuclear code
    annotations:
      ncbi_id:
        tag: ncbi_id
        value: 31
      name:
        tag: name
        value: Blastocrithidia Nuclear