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Enum: HumanChromosome

Nuclear and mitochondrial chromosomes of Homo sapiens (human), as represented in the Monochrom Ontology (CHR). Sequence lengths and accessions are from the UCSC hg38 assembly.

URI: valuesets:HumanChromosome

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Permissible Values

Value Title Meaning Description Genbank Accession Length Bp Refseq Accession
CHR1 1 CHR:9606-chr1 chromosome 1 (Human) CM000663.2 248956422 NC_000001.11
CHR2 2 CHR:9606-chr2 chromosome 2 (Human) CM000664.2 242193529 NC_000002.12
CHR3 3 CHR:9606-chr3 chromosome 3 (Human) CM000665.2 198295559 NC_000003.12
CHR4 4 CHR:9606-chr4 chromosome 4 (Human) CM000666.2 190214555 NC_000004.12
CHR5 5 CHR:9606-chr5 chromosome 5 (Human) CM000667.2 181538259 NC_000005.10
CHR6 6 CHR:9606-chr6 chromosome 6 (Human) CM000668.2 170805979 NC_000006.12
CHR7 7 CHR:9606-chr7 chromosome 7 (Human) CM000669.2 159345973 NC_000007.14
CHR8 8 CHR:9606-chr8 chromosome 8 (Human) CM000670.2 145138636 NC_000008.11
CHR9 9 CHR:9606-chr9 chromosome 9 (Human) CM000671.2 138394717 NC_000009.12
CHR10 10 CHR:9606-chr10 chromosome 10 (Human) CM000672.2 133797422 NC_000010.11
CHR11 11 CHR:9606-chr11 chromosome 11 (Human) CM000673.2 135086622 NC_000011.10
CHR12 12 CHR:9606-chr12 chromosome 12 (Human) CM000674.2 133275309 NC_000012.12
CHR13 13 CHR:9606-chr13 chromosome 13 (Human) CM000675.2 114364328 NC_000013.11
CHR14 14 CHR:9606-chr14 chromosome 14 (Human) CM000676.2 107043718 NC_000014.9
CHR15 15 CHR:9606-chr15 chromosome 15 (Human) CM000677.2 101991189 NC_000015.10
CHR16 16 CHR:9606-chr16 chromosome 16 (Human) CM000678.2 90338345 NC_000016.10
CHR17 17 CHR:9606-chr17 chromosome 17 (Human) CM000679.2 83257441 NC_000017.11
CHR18 18 CHR:9606-chr18 chromosome 18 (Human) CM000680.2 80373285 NC_000018.10
CHR19 19 CHR:9606-chr19 chromosome 19 (Human) CM000681.2 58617616 NC_000019.10
CHR20 20 CHR:9606-chr20 chromosome 20 (Human) CM000682.2 64444167 NC_000020.11
CHR21 21 CHR:9606-chr21 chromosome 21 (Human) CM000683.2 46709983 NC_000021.9
CHR22 22 CHR:9606-chr22 chromosome 22 (Human) CM000684.2 50818468 NC_000022.11
CHRX X CHR:9606-chrX chromosome X (Human) CM000685.2 156040895 NC_000023.11
CHRY Y CHR:9606-chrY chromosome Y (Human) CM000686.2 57227415 NC_000024.10
CHRM M CHR:9606-chrM chromosome M (Human) J01415.2 16569 NC_012920.1

Slots

Name Description
human_chromosome A human chromosome

Identifier and Mapping Information

Annotations

property value
source_ontology http://purl.obolibrary.org/obo/chr.owl
taxon NCBITaxon:9606

Schema Source

  • from schema: https://w3id.org/valuesets

LinkML Source

name: HumanChromosome
instantiates:
- valuesets_meta:ValueSetEnumDefinition
annotations:
  source_ontology:
    tag: source_ontology
    value: http://purl.obolibrary.org/obo/chr.owl
  taxon:
    tag: taxon
    value: NCBITaxon:9606
description: Nuclear and mitochondrial chromosomes of Homo sapiens (human), as represented
  in the Monochrom Ontology (CHR). Sequence lengths and accessions are from the UCSC
  hg38 assembly.
title: Homo sapiens Chromosome
from_schema: https://w3id.org/valuesets
contributors:
- orcid:0000-0002-6601-2165
- https://github.com/anthropics/claude-code
status: DRAFT
rank: 1000
permissible_values:
  CHR1:
    text: CHR1
    description: chromosome 1 (Human)
    meaning: CHR:9606-chr1
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000001.11
      genbank_accession:
        tag: genbank_accession
        value: CM000663.2
      length_bp:
        tag: length_bp
        value: 248956422
    title: '1'
    aliases:
    - chr1
  CHR2:
    text: CHR2
    description: chromosome 2 (Human)
    meaning: CHR:9606-chr2
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000002.12
      genbank_accession:
        tag: genbank_accession
        value: CM000664.2
      length_bp:
        tag: length_bp
        value: 242193529
    title: '2'
    aliases:
    - chr2
  CHR3:
    text: CHR3
    description: chromosome 3 (Human)
    meaning: CHR:9606-chr3
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000003.12
      genbank_accession:
        tag: genbank_accession
        value: CM000665.2
      length_bp:
        tag: length_bp
        value: 198295559
    title: '3'
    aliases:
    - chr3
  CHR4:
    text: CHR4
    description: chromosome 4 (Human)
    meaning: CHR:9606-chr4
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000004.12
      genbank_accession:
        tag: genbank_accession
        value: CM000666.2
      length_bp:
        tag: length_bp
        value: 190214555
    title: '4'
    aliases:
    - chr4
  CHR5:
    text: CHR5
    description: chromosome 5 (Human)
    meaning: CHR:9606-chr5
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000005.10
      genbank_accession:
        tag: genbank_accession
        value: CM000667.2
      length_bp:
        tag: length_bp
        value: 181538259
    title: '5'
    aliases:
    - chr5
  CHR6:
    text: CHR6
    description: chromosome 6 (Human)
    meaning: CHR:9606-chr6
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000006.12
      genbank_accession:
        tag: genbank_accession
        value: CM000668.2
      length_bp:
        tag: length_bp
        value: 170805979
    title: '6'
    aliases:
    - chr6
  CHR7:
    text: CHR7
    description: chromosome 7 (Human)
    meaning: CHR:9606-chr7
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000007.14
      genbank_accession:
        tag: genbank_accession
        value: CM000669.2
      length_bp:
        tag: length_bp
        value: 159345973
    title: '7'
    aliases:
    - chr7
  CHR8:
    text: CHR8
    description: chromosome 8 (Human)
    meaning: CHR:9606-chr8
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000008.11
      genbank_accession:
        tag: genbank_accession
        value: CM000670.2
      length_bp:
        tag: length_bp
        value: 145138636
    title: '8'
    aliases:
    - chr8
  CHR9:
    text: CHR9
    description: chromosome 9 (Human)
    meaning: CHR:9606-chr9
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000009.12
      genbank_accession:
        tag: genbank_accession
        value: CM000671.2
      length_bp:
        tag: length_bp
        value: 138394717
    title: '9'
    aliases:
    - chr9
  CHR10:
    text: CHR10
    description: chromosome 10 (Human)
    meaning: CHR:9606-chr10
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000010.11
      genbank_accession:
        tag: genbank_accession
        value: CM000672.2
      length_bp:
        tag: length_bp
        value: 133797422
    title: '10'
    aliases:
    - chr10
  CHR11:
    text: CHR11
    description: chromosome 11 (Human)
    meaning: CHR:9606-chr11
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000011.10
      genbank_accession:
        tag: genbank_accession
        value: CM000673.2
      length_bp:
        tag: length_bp
        value: 135086622
    title: '11'
    aliases:
    - chr11
  CHR12:
    text: CHR12
    description: chromosome 12 (Human)
    meaning: CHR:9606-chr12
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000012.12
      genbank_accession:
        tag: genbank_accession
        value: CM000674.2
      length_bp:
        tag: length_bp
        value: 133275309
    title: '12'
    aliases:
    - chr12
  CHR13:
    text: CHR13
    description: chromosome 13 (Human)
    meaning: CHR:9606-chr13
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000013.11
      genbank_accession:
        tag: genbank_accession
        value: CM000675.2
      length_bp:
        tag: length_bp
        value: 114364328
    title: '13'
    aliases:
    - chr13
  CHR14:
    text: CHR14
    description: chromosome 14 (Human)
    meaning: CHR:9606-chr14
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000014.9
      genbank_accession:
        tag: genbank_accession
        value: CM000676.2
      length_bp:
        tag: length_bp
        value: 107043718
    title: '14'
    aliases:
    - chr14
  CHR15:
    text: CHR15
    description: chromosome 15 (Human)
    meaning: CHR:9606-chr15
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000015.10
      genbank_accession:
        tag: genbank_accession
        value: CM000677.2
      length_bp:
        tag: length_bp
        value: 101991189
    title: '15'
    aliases:
    - chr15
  CHR16:
    text: CHR16
    description: chromosome 16 (Human)
    meaning: CHR:9606-chr16
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000016.10
      genbank_accession:
        tag: genbank_accession
        value: CM000678.2
      length_bp:
        tag: length_bp
        value: 90338345
    title: '16'
    aliases:
    - chr16
  CHR17:
    text: CHR17
    description: chromosome 17 (Human)
    meaning: CHR:9606-chr17
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000017.11
      genbank_accession:
        tag: genbank_accession
        value: CM000679.2
      length_bp:
        tag: length_bp
        value: 83257441
    title: '17'
    aliases:
    - chr17
  CHR18:
    text: CHR18
    description: chromosome 18 (Human)
    meaning: CHR:9606-chr18
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000018.10
      genbank_accession:
        tag: genbank_accession
        value: CM000680.2
      length_bp:
        tag: length_bp
        value: 80373285
    title: '18'
    aliases:
    - chr18
  CHR19:
    text: CHR19
    description: chromosome 19 (Human)
    meaning: CHR:9606-chr19
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000019.10
      genbank_accession:
        tag: genbank_accession
        value: CM000681.2
      length_bp:
        tag: length_bp
        value: 58617616
    title: '19'
    aliases:
    - chr19
  CHR20:
    text: CHR20
    description: chromosome 20 (Human)
    meaning: CHR:9606-chr20
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000020.11
      genbank_accession:
        tag: genbank_accession
        value: CM000682.2
      length_bp:
        tag: length_bp
        value: 64444167
    title: '20'
    aliases:
    - chr20
  CHR21:
    text: CHR21
    description: chromosome 21 (Human)
    meaning: CHR:9606-chr21
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000021.9
      genbank_accession:
        tag: genbank_accession
        value: CM000683.2
      length_bp:
        tag: length_bp
        value: 46709983
    title: '21'
    aliases:
    - chr21
  CHR22:
    text: CHR22
    description: chromosome 22 (Human)
    meaning: CHR:9606-chr22
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000022.11
      genbank_accession:
        tag: genbank_accession
        value: CM000684.2
      length_bp:
        tag: length_bp
        value: 50818468
    title: '22'
    aliases:
    - chr22
  CHRX:
    text: CHRX
    description: chromosome X (Human)
    meaning: CHR:9606-chrX
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000023.11
      genbank_accession:
        tag: genbank_accession
        value: CM000685.2
      length_bp:
        tag: length_bp
        value: 156040895
    title: X
    aliases:
    - chrX
  CHRY:
    text: CHRY
    description: chromosome Y (Human)
    meaning: CHR:9606-chrY
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000024.10
      genbank_accession:
        tag: genbank_accession
        value: CM000686.2
      length_bp:
        tag: length_bp
        value: 57227415
    title: Y
    aliases:
    - chrY
  CHRM:
    text: CHRM
    description: chromosome M (Human)
    meaning: CHR:9606-chrM
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_012920.1
      genbank_accession:
        tag: genbank_accession
        value: J01415.2
      length_bp:
        tag: length_bp
        value: 16569
    title: M
    aliases:
    - chrM
    - MT
    - chrMT