Enum: IUPACAminoAcidCode

Complete IUPAC amino acid codes including standard amino acids,

rare amino acids, and ambiguity codes

Permissible Values

Value	Meaning	Description
A	None	Alanine
R	None	Arginine
N	None	Asparagine
D	None	Aspartic acid
C	None	Cysteine
E	None	Glutamic acid
Q	None	Glutamine
G	None	Glycine
H	None	Histidine
I	None	Isoleucine
L	None	Leucine
K	None	Lysine
M	None	Methionine
F	None	Phenylalanine
P	None	Proline
S	None	Serine
T	None	Threonine
W	None	Tryptophan
Y	None	Tyrosine
V	None	Valine
U	None	Selenocysteine (21st amino acid)
O	None	Pyrrolysine (22nd amino acid)
B	None	Asparagine or Aspartic acid (N or D)
Z	None	Glutamine or Glutamic acid (Q or E)
J	None	Leucine or Isoleucine (L or I)
X	None	Any amino acid
STOP	None	Translation stop codon
GAP	None	Gap or deletion in alignment

Slots

Name	Description
iupac_amino_acid	Complete IUPAC amino acid codes including standard amino acids, rare amino ac...

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/valuesets

LinkML Source

name: IUPACAminoAcidCode
description: 'Complete IUPAC amino acid codes including standard amino acids,

  rare amino acids, and ambiguity codes'
title: IUPAC Amino Acid Codes
from_schema: https://w3id.org/linkml/valuesets
rank: 1000
permissible_values:
  A:
    text: A
    description: Alanine
    title: A
  R:
    text: R
    description: Arginine
    title: R
  N:
    text: N
    description: Asparagine
    title: N
  D:
    text: D
    description: Aspartic acid
    title: D
  C:
    text: C
    description: Cysteine
    title: C
  E:
    text: E
    description: Glutamic acid
    title: E
  Q:
    text: Q
    description: Glutamine
    title: Q
  G:
    text: G
    description: Glycine
    title: G
  H:
    text: H
    description: Histidine
    title: H
  I:
    text: I
    description: Isoleucine
    title: I
  L:
    text: L
    description: Leucine
    title: L
  K:
    text: K
    description: Lysine
    title: K
  M:
    text: M
    description: Methionine
    title: M
  F:
    text: F
    description: Phenylalanine
    title: F
  P:
    text: P
    description: Proline
    title: P
  S:
    text: S
    description: Serine
    title: S
  T:
    text: T
    description: Threonine
    title: T
  W:
    text: W
    description: Tryptophan
    title: W
  Y:
    text: Y
    description: Tyrosine
    title: Y
  V:
    text: V
    description: Valine
    title: V
  U:
    text: U
    description: Selenocysteine (21st amino acid)
    title: U
    aliases:
    - Sec
  O:
    text: O
    description: Pyrrolysine (22nd amino acid)
    title: O
    aliases:
    - Pyl
  B:
    text: B
    description: Asparagine or Aspartic acid (N or D)
  Z:
    text: Z
    description: Glutamine or Glutamic acid (Q or E)
  J:
    text: J
    description: Leucine or Isoleucine (L or I)
  X:
    text: X
    description: Any amino acid
  STOP:
    text: STOP
    description: Translation stop codon
    title: '*'
  GAP:
    text: GAP
    description: Gap or deletion in alignment
    title: '-'