Enum: ImagingAssayEnum
Imaging-based assays including microscopy, MRI, and related methods
URI: valuesets:ImagingAssayEnum
Permissible Values
| Value | Meaning | Description |
|---|---|---|
| BRIGHTFIELD_MICROSCOPY | CHMO:0000104 | Brightfield microscopy imaging |
| CONFOCAL_MICROSCOPY | CHMO:0000545 | Confocal laser scanning microscopy |
| THREE_D_CONFOCAL_IMAGING | None | Three-dimensional confocal imaging |
| FLUORESCENCE_MICROSCOPY | CHMO:0000087 | Fluorescence microscopy assay |
| PHASE_CONTRAST_MICROSCOPY | CHMO:0000056 | Phase-contrast microscopy |
| ATOMIC_FORCE_MICROSCOPY | CHMO:0000113 | Atomic force microscopy |
| THREE_D_ELECTRON_MICROSCOPY | None | Three-dimensional electron microscopy |
| IMMUNOFLUORESCENCE | OBI:0003357 | Immunofluorescence staining and imaging |
| IMMUNOHISTOCHEMISTRY | OBI:0001986 | Immunohistochemistry staining |
| IMMUNOCYTOCHEMISTRY | None | Immunocytochemistry staining |
| HISTOLOGY | OBI:0600020 | Histological examination |
| FISH | OBI:0003094 | Fluorescence In Situ Hybridization |
| CODEX | None | CO-Detection by indEXing imaging |
| LIVE_IMAGING | None | Live cell or tissue imaging |
| AUTORADIOGRAPHY | CHMO:0000812 | Autoradiography imaging |
| CONVENTIONAL_MRI | OBI:0002985 | Conventional magnetic resonance imaging |
| FUNCTIONAL_MRI | OBI:0001501 | Functional magnetic resonance imaging |
| DIFFUSION_MRI | None | Diffusion-weighted MRI |
| MPRAGE_MRI | None | Magnetization-Prepared Rapid Gradient Echo MRI |
| MAGNETIC_RESONANCE_SPECTROSCOPY | CHMO:0000566 | Magnetic resonance spectroscopy |
| MAGNETIC_RESONANCE_ANGIOGRAPHY | OBI:0002986 | Magnetic resonance angiography |
| POSITRON_EMISSION_TOMOGRAPHY | OBI:0001912 | Positron emission tomography |
| OPTICAL_COHERENCE_TOMOGRAPHY | CHMO:0000896 | Optical coherence tomography |
| OPTICAL_TOMOGRAPHY | None | Optical tomography |
| HIGH_FREQUENCY_ULTRASOUND | None | High frequency ultrasound imaging |
| TRANSCRANIAL_DOPPLER | None | Transcranial doppler ultrasonography |
| IN_VIVO_BIOLUMINESCENCE | OBI:0001503 | In vivo bioluminescence imaging |
| LASER_SPECKLE_IMAGING | None | Laser speckle contrast imaging |
| SPATIAL_FREQUENCY_DOMAIN_IMAGING | None | Spatial frequency domain imaging |
| TRACTION_FORCE_MICROSCOPY | None | Traction force microscopy |
| PHOTOGRAPH | None | Photographic documentation |
Slots
| Name | Description |
|---|---|
| imaging_assay | Imaging-based assay type |
See Also
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/valuesets
LinkML Source
name: ImagingAssayEnum
instantiates:
- valuesets_meta:ValueSetEnumDefinition
description: Imaging-based assays including microscopy, MRI, and related methods
title: Imaging Assay Types
from_schema: https://w3id.org/valuesets
see_also:
- https://nf-osi.github.io/nf-metadata-dictionary/
contributors:
- orcid:0000-0002-6601-2165
- https://github.com/anthropics/claude-code
status: DRAFT
rank: 1000
permissible_values:
BRIGHTFIELD_MICROSCOPY:
text: BRIGHTFIELD_MICROSCOPY
description: Brightfield microscopy imaging
meaning: CHMO:0000104
CONFOCAL_MICROSCOPY:
text: CONFOCAL_MICROSCOPY
description: Confocal laser scanning microscopy
meaning: CHMO:0000545
THREE_D_CONFOCAL_IMAGING:
text: THREE_D_CONFOCAL_IMAGING
description: Three-dimensional confocal imaging
aliases:
- 3D confocal imaging
FLUORESCENCE_MICROSCOPY:
text: FLUORESCENCE_MICROSCOPY
description: Fluorescence microscopy assay
meaning: CHMO:0000087
PHASE_CONTRAST_MICROSCOPY:
text: PHASE_CONTRAST_MICROSCOPY
description: Phase-contrast microscopy
meaning: CHMO:0000056
ATOMIC_FORCE_MICROSCOPY:
text: ATOMIC_FORCE_MICROSCOPY
description: Atomic force microscopy
meaning: CHMO:0000113
aliases:
- AFM
THREE_D_ELECTRON_MICROSCOPY:
text: THREE_D_ELECTRON_MICROSCOPY
description: Three-dimensional electron microscopy
aliases:
- 3D EM
IMMUNOFLUORESCENCE:
text: IMMUNOFLUORESCENCE
description: Immunofluorescence staining and imaging
meaning: OBI:0003357
IMMUNOHISTOCHEMISTRY:
text: IMMUNOHISTOCHEMISTRY
description: Immunohistochemistry staining
meaning: OBI:0001986
aliases:
- IHC
IMMUNOCYTOCHEMISTRY:
text: IMMUNOCYTOCHEMISTRY
description: Immunocytochemistry staining
aliases:
- ICC
HISTOLOGY:
text: HISTOLOGY
description: Histological examination
meaning: OBI:0600020
FISH:
text: FISH
description: Fluorescence In Situ Hybridization
meaning: OBI:0003094
aliases:
- Fluorescence In Situ Hybridization
CODEX:
text: CODEX
description: CO-Detection by indEXing imaging
LIVE_IMAGING:
text: LIVE_IMAGING
description: Live cell or tissue imaging
AUTORADIOGRAPHY:
text: AUTORADIOGRAPHY
description: Autoradiography imaging
meaning: CHMO:0000812
CONVENTIONAL_MRI:
text: CONVENTIONAL_MRI
description: Conventional magnetic resonance imaging
meaning: OBI:0002985
FUNCTIONAL_MRI:
text: FUNCTIONAL_MRI
description: Functional magnetic resonance imaging
meaning: OBI:0001501
aliases:
- fMRI
DIFFUSION_MRI:
text: DIFFUSION_MRI
description: Diffusion-weighted MRI
aliases:
- DWI
MPRAGE_MRI:
text: MPRAGE_MRI
description: Magnetization-Prepared Rapid Gradient Echo MRI
aliases:
- MPRAGE
MAGNETIC_RESONANCE_SPECTROSCOPY:
text: MAGNETIC_RESONANCE_SPECTROSCOPY
description: Magnetic resonance spectroscopy
meaning: CHMO:0000566
aliases:
- MRS
MAGNETIC_RESONANCE_ANGIOGRAPHY:
text: MAGNETIC_RESONANCE_ANGIOGRAPHY
description: Magnetic resonance angiography
meaning: OBI:0002986
aliases:
- MRA
POSITRON_EMISSION_TOMOGRAPHY:
text: POSITRON_EMISSION_TOMOGRAPHY
description: Positron emission tomography
meaning: OBI:0001912
aliases:
- PET
OPTICAL_COHERENCE_TOMOGRAPHY:
text: OPTICAL_COHERENCE_TOMOGRAPHY
description: Optical coherence tomography
meaning: CHMO:0000896
aliases:
- OCT
OPTICAL_TOMOGRAPHY:
text: OPTICAL_TOMOGRAPHY
description: Optical tomography
HIGH_FREQUENCY_ULTRASOUND:
text: HIGH_FREQUENCY_ULTRASOUND
description: High frequency ultrasound imaging
TRANSCRANIAL_DOPPLER:
text: TRANSCRANIAL_DOPPLER
description: Transcranial doppler ultrasonography
IN_VIVO_BIOLUMINESCENCE:
text: IN_VIVO_BIOLUMINESCENCE
description: In vivo bioluminescence imaging
meaning: OBI:0001503
LASER_SPECKLE_IMAGING:
text: LASER_SPECKLE_IMAGING
description: Laser speckle contrast imaging
SPATIAL_FREQUENCY_DOMAIN_IMAGING:
text: SPATIAL_FREQUENCY_DOMAIN_IMAGING
description: Spatial frequency domain imaging
TRACTION_FORCE_MICROSCOPY:
text: TRACTION_FORCE_MICROSCOPY
description: Traction force microscopy
PHOTOGRAPH:
text: PHOTOGRAPH
description: Photographic documentation