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Enum: InsdcMissingValueEnum

INSDC (International Nucleotide Sequence Database Collaboration) controlled vocabulary for missing values in sequence records

URI: valuesets:InsdcMissingValueEnum

Permissible Values

Value Meaning Description
NOT_APPLICABLE NCIT:C48660 Information is inappropriate to report, can indicate that the standard itself...
MISSING NCIT:C54031 Not stated explicitly or implied by any other means
NOT_COLLECTED NCIT:C142610 Information of an expected format was not given because it has never been col...
NOT_PROVIDED NCIT:C126101 Information of an expected format was not given, a value may be given at the ...
RESTRICTED_ACCESS NCIT:C67110 Information exists but cannot be released openly because of privacy concerns
MISSING_CONTROL_SAMPLE None Information is not applicable to control samples, negative control samples (e
MISSING_SAMPLE_GROUP None Information can not be provided for a sample group where a selection of sampl...
MISSING_SYNTHETIC_CONSTRUCT None Information does not exist for a synthetic construct
MISSING_LAB_STOCK None Information is not collected for a lab stock and its cultivation, e
MISSING_THIRD_PARTY_DATA NCIT:C67329 Information has not been revealed by another party
MISSING_DATA_AGREEMENT_ESTABLISHED_PRE_2023 None Information can not be reported due to a data agreement established before me...
MISSING_ENDANGERED_SPECIES None Information can not be reported due to endangered species concerns
MISSING_HUMAN_IDENTIFIABLE None Information can not be reported due to identifiable human data concerns

Slots

Name Description
insdc_missing_value INSDC (International Nucleotide Sequence Database Collaboration) controlled v...

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/linkml/valuesets

LinkML Source

name: InsdcMissingValueEnum
description: INSDC (International Nucleotide Sequence Database Collaboration) controlled
  vocabulary for missing values in sequence records
from_schema: https://w3id.org/linkml/valuesets
rank: 1000
permissible_values:
  NOT_APPLICABLE:
    text: NOT_APPLICABLE
    description: Information is inappropriate to report, can indicate that the standard
      itself fails to model or represent the information appropriately
    meaning: NCIT:C48660
    title: not applicable
  MISSING:
    text: MISSING
    description: Not stated explicitly or implied by any other means
    meaning: NCIT:C54031
    title: missing
  NOT_COLLECTED:
    text: NOT_COLLECTED
    description: Information of an expected format was not given because it has never
      been collected
    meaning: NCIT:C142610
    annotations:
      note:
        tag: note
        value: NCIT:C142610 represents Missing Data which encompasses data not collected
    title: Missing Data
  NOT_PROVIDED:
    text: NOT_PROVIDED
    description: Information of an expected format was not given, a value may be given
      at the later stage
    meaning: NCIT:C126101
    annotations:
      note:
        tag: note
        value: Using NCIT:C126101 (Not Available) as a general term for data not provided
    title: Not Available
  RESTRICTED_ACCESS:
    text: RESTRICTED_ACCESS
    description: Information exists but cannot be released openly because of privacy
      concerns
    meaning: NCIT:C67110
    annotations:
      note:
        tag: note
        value: NCIT:C67110 represents Data Not Releasable due to confidentiality
    title: Data Not Releasable
  MISSING_CONTROL_SAMPLE:
    text: MISSING_CONTROL_SAMPLE
    description: Information is not applicable to control samples, negative control
      samples (e.g. blank sample or clear sample)
    annotations:
      note:
        tag: note
        value: No specific ontology term found for missing control sample data
  MISSING_SAMPLE_GROUP:
    text: MISSING_SAMPLE_GROUP
    description: Information can not be provided for a sample group where a selection
      of samples is used to represent a species, location or some other attribute/metric
    annotations:
      note:
        tag: note
        value: No specific ontology term found for missing sample group data
  MISSING_SYNTHETIC_CONSTRUCT:
    text: MISSING_SYNTHETIC_CONSTRUCT
    description: Information does not exist for a synthetic construct
    annotations:
      note:
        tag: note
        value: No specific ontology term found for missing synthetic construct data
  MISSING_LAB_STOCK:
    text: MISSING_LAB_STOCK
    description: Information is not collected for a lab stock and its cultivation,
      e.g. stock centers, culture collections, seed banks
    annotations:
      note:
        tag: note
        value: No specific ontology term found for missing lab stock data
  MISSING_THIRD_PARTY_DATA:
    text: MISSING_THIRD_PARTY_DATA
    description: Information has not been revealed by another party
    meaning: NCIT:C67329
    annotations:
      note:
        tag: note
        value: NCIT:C67329 represents Source Data Not Available
    title: Source Data Not Available
  MISSING_DATA_AGREEMENT_ESTABLISHED_PRE_2023:
    text: MISSING_DATA_AGREEMENT_ESTABLISHED_PRE_2023
    description: Information can not be reported due to a data agreement established
      before metadata standards were introduced in 2023
    annotations:
      note:
        tag: note
        value: No specific ontology term for data missing due to pre-2023 agreements
  MISSING_ENDANGERED_SPECIES:
    text: MISSING_ENDANGERED_SPECIES
    description: Information can not be reported due to endangered species concerns
    annotations:
      note:
        tag: note
        value: No specific ontology term for data withheld due to endangered species
  MISSING_HUMAN_IDENTIFIABLE:
    text: MISSING_HUMAN_IDENTIFIABLE
    description: Information can not be reported due to identifiable human data concerns
    annotations:
      note:
        tag: note
        value: No specific ontology term for data withheld due to human identifiability