Enum: LibraryPreparation

Methods for preparing sequencing libraries from nucleic acid samples

Permissible Values

Value	Meaning	Description
GENOMIC_DNA	None	Genomic DNA library preparation
WHOLE_GENOME_AMPLIFICATION	None	Whole genome amplification (WGA)
PCR_AMPLICON	None	PCR amplicon sequencing
RNA_SEQ	None	RNA sequencing library prep
SMALL_RNA_SEQ	None	Small RNA sequencing
SINGLE_CELL_RNA_SEQ	None	Single-cell RNA sequencing
ATAC_SEQ	None	ATAC-seq (chromatin accessibility)
CHIP_SEQ	None	ChIP-seq (chromatin immunoprecipitation)
BISULFITE_SEQ	None	Bisulfite sequencing (methylation)
HI_C	None	Hi-C (chromosome conformation capture)
CUT_AND_RUN	None	CUT&RUN (chromatin profiling)
CUT_AND_TAG	None	CUT&Tag (chromatin profiling)
CAPTURE_SEQUENCING	None	Target capture/enrichment sequencing
EXOME_SEQUENCING	None	Whole exome sequencing
METAGENOMICS	None	Metagenomic sequencing
AMPLICON_SEQUENCING	None	16S/ITS amplicon sequencing
DIRECT_RNA	None	Direct RNA sequencing (nanopore)
CDNA_SEQUENCING	None	cDNA sequencing
RIBOSOME_PROFILING	None	Ribosome profiling (Ribo-seq)

Slots

Name	Description
library_preparation	Methods for preparing sequencing libraries from nucleic acid samples

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/valuesets

LinkML Source

name: LibraryPreparation
description: Methods for preparing sequencing libraries from nucleic acid samples
title: Library Preparation Methods
from_schema: https://w3id.org/linkml/valuesets
rank: 1000
permissible_values:
  GENOMIC_DNA:
    text: GENOMIC_DNA
    description: Genomic DNA library preparation
  WHOLE_GENOME_AMPLIFICATION:
    text: WHOLE_GENOME_AMPLIFICATION
    description: Whole genome amplification (WGA)
  PCR_AMPLICON:
    text: PCR_AMPLICON
    description: PCR amplicon sequencing
  RNA_SEQ:
    text: RNA_SEQ
    description: RNA sequencing library prep
  SMALL_RNA_SEQ:
    text: SMALL_RNA_SEQ
    description: Small RNA sequencing
  SINGLE_CELL_RNA_SEQ:
    text: SINGLE_CELL_RNA_SEQ
    description: Single-cell RNA sequencing
  ATAC_SEQ:
    text: ATAC_SEQ
    description: ATAC-seq (chromatin accessibility)
  CHIP_SEQ:
    text: CHIP_SEQ
    description: ChIP-seq (chromatin immunoprecipitation)
  BISULFITE_SEQ:
    text: BISULFITE_SEQ
    description: Bisulfite sequencing (methylation)
  HI_C:
    text: HI_C
    description: Hi-C (chromosome conformation capture)
  CUT_AND_RUN:
    text: CUT_AND_RUN
    description: CUT&RUN (chromatin profiling)
  CUT_AND_TAG:
    text: CUT_AND_TAG
    description: CUT&Tag (chromatin profiling)
  CAPTURE_SEQUENCING:
    text: CAPTURE_SEQUENCING
    description: Target capture/enrichment sequencing
  EXOME_SEQUENCING:
    text: EXOME_SEQUENCING
    description: Whole exome sequencing
  METAGENOMICS:
    text: METAGENOMICS
    description: Metagenomic sequencing
  AMPLICON_SEQUENCING:
    text: AMPLICON_SEQUENCING
    description: 16S/ITS amplicon sequencing
  DIRECT_RNA:
    text: DIRECT_RNA
    description: Direct RNA sequencing (nanopore)
  CDNA_SEQUENCING:
    text: CDNA_SEQUENCING
    description: cDNA sequencing
  RIBOSOME_PROFILING:
    text: RIBOSOME_PROFILING
    description: Ribosome profiling (Ribo-seq)