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Enum: MouseChromosome

Nuclear and mitochondrial chromosomes of Mus musculus (mouse), as represented in the Monochrom Ontology (CHR). Sequence lengths and accessions are from the UCSC mm39 assembly.

URI: valuesets:MouseChromosome

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Permissible Values

Value Title Meaning Description Genbank Accession Length Bp Refseq Accession
CHR1 1 CHR:10090-chr1 chromosome 1 (Mouse) CM000994.3 195154279 NC_000067.7
CHR2 2 CHR:10090-chr2 chromosome 2 (Mouse) CM000995.3 181755017 NC_000068.8
CHR3 3 CHR:10090-chr3 chromosome 3 (Mouse) CM000996.3 159745316 NC_000069.7
CHR4 4 CHR:10090-chr4 chromosome 4 (Mouse) CM000997.3 156860686 NC_000070.7
CHR5 5 CHR:10090-chr5 chromosome 5 (Mouse) CM000998.3 151758149 NC_000071.7
CHR6 6 CHR:10090-chr6 chromosome 6 (Mouse) CM000999.3 149588044 NC_000072.7
CHR7 7 CHR:10090-chr7 chromosome 7 (Mouse) CM001000.3 144995196 NC_000073.7
CHR8 8 CHR:10090-chr8 chromosome 8 (Mouse) CM001001.3 130127694 NC_000074.7
CHR9 9 CHR:10090-chr9 chromosome 9 (Mouse) CM001002.3 124359700 NC_000075.7
CHR10 10 CHR:10090-chr10 chromosome 10 (Mouse) CM001003.3 130530862 NC_000076.7
CHR11 11 CHR:10090-chr11 chromosome 11 (Mouse) CM001004.3 121973369 NC_000077.7
CHR12 12 CHR:10090-chr12 chromosome 12 (Mouse) CM001005.3 120092757 NC_000078.7
CHR13 13 CHR:10090-chr13 chromosome 13 (Mouse) CM001006.3 120883175 NC_000079.7
CHR14 14 CHR:10090-chr14 chromosome 14 (Mouse) CM001007.3 125139656 NC_000080.7
CHR15 15 CHR:10090-chr15 chromosome 15 (Mouse) CM001008.3 104073951 NC_000081.7
CHR16 16 CHR:10090-chr16 chromosome 16 (Mouse) CM001009.3 98008968 NC_000082.7
CHR17 17 CHR:10090-chr17 chromosome 17 (Mouse) CM001010.3 95294699 NC_000083.7
CHR18 18 CHR:10090-chr18 chromosome 18 (Mouse) CM001011.3 90720763 NC_000084.7
CHR19 19 CHR:10090-chr19 chromosome 19 (Mouse) CM001012.3 61420004 NC_000085.7
CHRX X CHR:10090-chrX chromosome X (Mouse) CM001013.3 169476592 NC_000086.8
CHRY Y CHR:10090-chrY chromosome Y (Mouse) CM001014.3 91455967 NC_000087.8
CHRM M CHR:10090-chrM chromosome M (Mouse) AY172335.1 16299 NC_005089.1

Slots

Name Description
mouse_chromosome A mouse chromosome

Identifier and Mapping Information

Annotations

property value
source_ontology http://purl.obolibrary.org/obo/chr.owl
taxon NCBITaxon:10090

Schema Source

  • from schema: https://w3id.org/valuesets

LinkML Source

name: MouseChromosome
instantiates:
- valuesets_meta:ValueSetEnumDefinition
annotations:
  source_ontology:
    tag: source_ontology
    value: http://purl.obolibrary.org/obo/chr.owl
  taxon:
    tag: taxon
    value: NCBITaxon:10090
description: Nuclear and mitochondrial chromosomes of Mus musculus (mouse), as represented
  in the Monochrom Ontology (CHR). Sequence lengths and accessions are from the UCSC
  mm39 assembly.
title: Mus musculus Chromosome
from_schema: https://w3id.org/valuesets
contributors:
- orcid:0000-0002-6601-2165
- https://github.com/anthropics/claude-code
status: DRAFT
rank: 1000
permissible_values:
  CHR1:
    text: CHR1
    description: chromosome 1 (Mouse)
    meaning: CHR:10090-chr1
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000067.7
      genbank_accession:
        tag: genbank_accession
        value: CM000994.3
      length_bp:
        tag: length_bp
        value: 195154279
    title: '1'
    aliases:
    - chr1
  CHR2:
    text: CHR2
    description: chromosome 2 (Mouse)
    meaning: CHR:10090-chr2
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000068.8
      genbank_accession:
        tag: genbank_accession
        value: CM000995.3
      length_bp:
        tag: length_bp
        value: 181755017
    title: '2'
    aliases:
    - chr2
  CHR3:
    text: CHR3
    description: chromosome 3 (Mouse)
    meaning: CHR:10090-chr3
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000069.7
      genbank_accession:
        tag: genbank_accession
        value: CM000996.3
      length_bp:
        tag: length_bp
        value: 159745316
    title: '3'
    aliases:
    - chr3
  CHR4:
    text: CHR4
    description: chromosome 4 (Mouse)
    meaning: CHR:10090-chr4
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000070.7
      genbank_accession:
        tag: genbank_accession
        value: CM000997.3
      length_bp:
        tag: length_bp
        value: 156860686
    title: '4'
    aliases:
    - chr4
  CHR5:
    text: CHR5
    description: chromosome 5 (Mouse)
    meaning: CHR:10090-chr5
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000071.7
      genbank_accession:
        tag: genbank_accession
        value: CM000998.3
      length_bp:
        tag: length_bp
        value: 151758149
    title: '5'
    aliases:
    - chr5
  CHR6:
    text: CHR6
    description: chromosome 6 (Mouse)
    meaning: CHR:10090-chr6
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000072.7
      genbank_accession:
        tag: genbank_accession
        value: CM000999.3
      length_bp:
        tag: length_bp
        value: 149588044
    title: '6'
    aliases:
    - chr6
  CHR7:
    text: CHR7
    description: chromosome 7 (Mouse)
    meaning: CHR:10090-chr7
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000073.7
      genbank_accession:
        tag: genbank_accession
        value: CM001000.3
      length_bp:
        tag: length_bp
        value: 144995196
    title: '7'
    aliases:
    - chr7
  CHR8:
    text: CHR8
    description: chromosome 8 (Mouse)
    meaning: CHR:10090-chr8
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000074.7
      genbank_accession:
        tag: genbank_accession
        value: CM001001.3
      length_bp:
        tag: length_bp
        value: 130127694
    title: '8'
    aliases:
    - chr8
  CHR9:
    text: CHR9
    description: chromosome 9 (Mouse)
    meaning: CHR:10090-chr9
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000075.7
      genbank_accession:
        tag: genbank_accession
        value: CM001002.3
      length_bp:
        tag: length_bp
        value: 124359700
    title: '9'
    aliases:
    - chr9
  CHR10:
    text: CHR10
    description: chromosome 10 (Mouse)
    meaning: CHR:10090-chr10
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000076.7
      genbank_accession:
        tag: genbank_accession
        value: CM001003.3
      length_bp:
        tag: length_bp
        value: 130530862
    title: '10'
    aliases:
    - chr10
  CHR11:
    text: CHR11
    description: chromosome 11 (Mouse)
    meaning: CHR:10090-chr11
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000077.7
      genbank_accession:
        tag: genbank_accession
        value: CM001004.3
      length_bp:
        tag: length_bp
        value: 121973369
    title: '11'
    aliases:
    - chr11
  CHR12:
    text: CHR12
    description: chromosome 12 (Mouse)
    meaning: CHR:10090-chr12
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000078.7
      genbank_accession:
        tag: genbank_accession
        value: CM001005.3
      length_bp:
        tag: length_bp
        value: 120092757
    title: '12'
    aliases:
    - chr12
  CHR13:
    text: CHR13
    description: chromosome 13 (Mouse)
    meaning: CHR:10090-chr13
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000079.7
      genbank_accession:
        tag: genbank_accession
        value: CM001006.3
      length_bp:
        tag: length_bp
        value: 120883175
    title: '13'
    aliases:
    - chr13
  CHR14:
    text: CHR14
    description: chromosome 14 (Mouse)
    meaning: CHR:10090-chr14
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000080.7
      genbank_accession:
        tag: genbank_accession
        value: CM001007.3
      length_bp:
        tag: length_bp
        value: 125139656
    title: '14'
    aliases:
    - chr14
  CHR15:
    text: CHR15
    description: chromosome 15 (Mouse)
    meaning: CHR:10090-chr15
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000081.7
      genbank_accession:
        tag: genbank_accession
        value: CM001008.3
      length_bp:
        tag: length_bp
        value: 104073951
    title: '15'
    aliases:
    - chr15
  CHR16:
    text: CHR16
    description: chromosome 16 (Mouse)
    meaning: CHR:10090-chr16
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000082.7
      genbank_accession:
        tag: genbank_accession
        value: CM001009.3
      length_bp:
        tag: length_bp
        value: 98008968
    title: '16'
    aliases:
    - chr16
  CHR17:
    text: CHR17
    description: chromosome 17 (Mouse)
    meaning: CHR:10090-chr17
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000083.7
      genbank_accession:
        tag: genbank_accession
        value: CM001010.3
      length_bp:
        tag: length_bp
        value: 95294699
    title: '17'
    aliases:
    - chr17
  CHR18:
    text: CHR18
    description: chromosome 18 (Mouse)
    meaning: CHR:10090-chr18
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000084.7
      genbank_accession:
        tag: genbank_accession
        value: CM001011.3
      length_bp:
        tag: length_bp
        value: 90720763
    title: '18'
    aliases:
    - chr18
  CHR19:
    text: CHR19
    description: chromosome 19 (Mouse)
    meaning: CHR:10090-chr19
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000085.7
      genbank_accession:
        tag: genbank_accession
        value: CM001012.3
      length_bp:
        tag: length_bp
        value: 61420004
    title: '19'
    aliases:
    - chr19
  CHRX:
    text: CHRX
    description: chromosome X (Mouse)
    meaning: CHR:10090-chrX
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000086.8
      genbank_accession:
        tag: genbank_accession
        value: CM001013.3
      length_bp:
        tag: length_bp
        value: 169476592
    title: X
    aliases:
    - chrX
  CHRY:
    text: CHRY
    description: chromosome Y (Mouse)
    meaning: CHR:10090-chrY
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_000087.8
      genbank_accession:
        tag: genbank_accession
        value: CM001014.3
      length_bp:
        tag: length_bp
        value: 91455967
    title: Y
    aliases:
    - chrY
  CHRM:
    text: CHRM
    description: chromosome M (Mouse)
    meaning: CHR:10090-chrM
    annotations:
      refseq_accession:
        tag: refseq_accession
        value: NC_005089.1
      genbank_accession:
        tag: genbank_accession
        value: AY172335.1
      length_bp:
        tag: length_bp
        value: 16299
    title: M
    aliases:
    - chrM
    - MT
    - chrMT