Enum: ProteinModificationType

Types of protein modifications

Permissible Values

Value	Title	Meaning	Description	Examples
METAL_COORDINATION	iron-sulfur cluster containing modification	MOD:00739	Metal coordination modification	zinc finger, iron-sulfur cluster binding
PHOSPHORYLATION	phosphorylated residue	MOD:00696	Phosphorylation modification
GLYCOSYLATION	complex glycosylation	MOD:00725	Glycosylation modification
ACETYLATION	monoacetylated residue	MOD:00394	Acetylation modification
METHYLATION	monomethylated residue	MOD:00599	Methylation modification
UBIQUITINATION	ubiquitination signature tetrapeptidyl lysine	MOD:01240	Ubiquitination modification
SUMOYLATION	sumoylated lysine	MOD:01149	SUMOylation modification
HYDROXYLATION	hydroxylated residue	MOD:00677	Hydroxylation modification
LIPIDATION			Lipidation modification
PROTEOLYTIC_CLEAVAGE	proteolysis	GO:0006508	Proteolytic cleavage
CROSSLINKING	crosslinked residues	MOD:00033	Crosslinking modification

Slots

Name	Description
protein_modification	Type of protein modification

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/valuesets

LinkML Source

name: ProteinModificationType
instantiates:
- valuesets_meta:ValueSetEnumDefinition
description: Types of protein modifications
title: Protein Modification Type
from_schema: https://w3id.org/linkml/valuesets
contributors:
- orcid:0000-0002-6601-2165
- https://github.com/anthropics/claude-code
status: DRAFT
rank: 1000
permissible_values:
  METAL_COORDINATION:
    text: METAL_COORDINATION
    description: Metal coordination modification
    meaning: MOD:00739
    annotations:
      examples:
        tag: examples
        value: zinc finger, iron-sulfur cluster binding
    title: iron-sulfur cluster containing modification
  PHOSPHORYLATION:
    text: PHOSPHORYLATION
    description: Phosphorylation modification
    meaning: MOD:00696
    title: phosphorylated residue
  GLYCOSYLATION:
    text: GLYCOSYLATION
    description: Glycosylation modification
    meaning: MOD:00725
    title: complex glycosylation
  ACETYLATION:
    text: ACETYLATION
    description: Acetylation modification
    meaning: MOD:00394
    title: monoacetylated residue
  METHYLATION:
    text: METHYLATION
    description: Methylation modification
    meaning: MOD:00599
    title: monomethylated residue
  UBIQUITINATION:
    text: UBIQUITINATION
    description: Ubiquitination modification
    meaning: MOD:01240
    title: ubiquitination signature tetrapeptidyl lysine
  SUMOYLATION:
    text: SUMOYLATION
    description: SUMOylation modification
    meaning: MOD:01149
    title: sumoylated lysine
  HYDROXYLATION:
    text: HYDROXYLATION
    description: Hydroxylation modification
    meaning: MOD:00677
    title: hydroxylated residue
  LIPIDATION:
    text: LIPIDATION
    description: Lipidation modification
  PROTEOLYTIC_CLEAVAGE:
    text: PROTEOLYTIC_CLEAVAGE
    description: Proteolytic cleavage
    meaning: GO:0006508
    title: proteolysis
  CROSSLINKING:
    text: CROSSLINKING
    description: Crosslinking modification
    meaning: MOD:00033
    title: crosslinked residues