Enum: RatChromosome
Nuclear and mitochondrial chromosomes of Rattus norvegicus (rat), as represented in the Monochrom Ontology (CHR). Sequence lengths and accessions are from the UCSC rn6 assembly.
URI: valuesets:RatChromosome
View in BioPortal
Permissible Values
| Value |
Title |
Meaning |
Description |
Genbank Accession |
Length Bp |
Refseq Accession |
| CHR1 |
1 |
CHR:10116-chr1 |
chromosome 1 (Rat) |
CM000072.5 |
282763074 |
NC_005100.4 |
| CHR2 |
2 |
CHR:10116-chr2 |
chromosome 2 (Rat) |
CM000073.5 |
266435125 |
NC_005101.4 |
| CHR3 |
3 |
CHR:10116-chr3 |
chromosome 3 (Rat) |
CM000074.5 |
177699992 |
NC_005102.4 |
| CHR4 |
4 |
CHR:10116-chr4 |
chromosome 4 (Rat) |
CM000075.5 |
184226339 |
NC_005103.4 |
| CHR5 |
5 |
CHR:10116-chr5 |
chromosome 5 (Rat) |
CM000076.5 |
173707219 |
NC_005104.4 |
| CHR6 |
6 |
CHR:10116-chr6 |
chromosome 6 (Rat) |
CM000077.5 |
147991367 |
NC_005105.4 |
| CHR7 |
7 |
CHR:10116-chr7 |
chromosome 7 (Rat) |
CM000078.5 |
145729302 |
NC_005106.4 |
| CHR8 |
8 |
CHR:10116-chr8 |
chromosome 8 (Rat) |
CM000079.5 |
133307652 |
NC_005107.4 |
| CHR9 |
9 |
CHR:10116-chr9 |
chromosome 9 (Rat) |
CM000080.5 |
122095297 |
NC_005108.4 |
| CHR10 |
10 |
CHR:10116-chr10 |
chromosome 10 (Rat) |
CM000081.5 |
112626471 |
NC_005109.4 |
| CHR11 |
11 |
CHR:10116-chr11 |
chromosome 11 (Rat) |
CM000082.5 |
90463843 |
NC_005110.4 |
| CHR12 |
12 |
CHR:10116-chr12 |
chromosome 12 (Rat) |
CM000083.5 |
52716770 |
NC_005111.4 |
| CHR13 |
13 |
CHR:10116-chr13 |
chromosome 13 (Rat) |
CM000084.5 |
114033958 |
NC_005112.4 |
| CHR14 |
14 |
CHR:10116-chr14 |
chromosome 14 (Rat) |
CM000085.5 |
115493446 |
NC_005113.4 |
| CHR15 |
15 |
CHR:10116-chr15 |
chromosome 15 (Rat) |
CM000086.5 |
111246239 |
NC_005114.4 |
| CHR16 |
16 |
CHR:10116-chr16 |
chromosome 16 (Rat) |
CM000087.5 |
90668790 |
NC_005115.4 |
| CHR17 |
17 |
CHR:10116-chr17 |
chromosome 17 (Rat) |
CM000088.5 |
90843779 |
NC_005116.4 |
| CHR18 |
18 |
CHR:10116-chr18 |
chromosome 18 (Rat) |
CM000089.5 |
88201929 |
NC_005117.4 |
| CHR19 |
19 |
CHR:10116-chr19 |
chromosome 19 (Rat) |
CM000090.5 |
62275575 |
NC_005118.4 |
| CHR20 |
20 |
CHR:10116-chr20 |
chromosome 20 (Rat) |
CM000091.5 |
56205956 |
NC_005119.4 |
| CHRX |
X |
CHR:10116-chrX |
chromosome X (Rat) |
CM000092.5 |
159970021 |
NC_005120.4 |
| CHRY |
Y |
CHR:10116-chrY |
chromosome Y (Rat) |
CM002824.1 |
3310458 |
NC_024475.1 |
| CHRM |
M |
CHR:10116-chrM |
chromosome M (Rat) |
AY172581.1 |
16313 |
NC_001665.2 |
Annotations
| property |
value |
| source_ontology |
http://purl.obolibrary.org/obo/chr.owl |
| taxon |
NCBITaxon:10116 |
Schema Source
- from schema: https://w3id.org/valuesets
LinkML Source
name: RatChromosome
instantiates:
- valuesets_meta:ValueSetEnumDefinition
annotations:
source_ontology:
tag: source_ontology
value: http://purl.obolibrary.org/obo/chr.owl
taxon:
tag: taxon
value: NCBITaxon:10116
description: Nuclear and mitochondrial chromosomes of Rattus norvegicus (rat), as
represented in the Monochrom Ontology (CHR). Sequence lengths and accessions are
from the UCSC rn6 assembly.
title: Rattus norvegicus Chromosome
from_schema: https://w3id.org/valuesets
contributors:
- orcid:0000-0002-6601-2165
- https://github.com/anthropics/claude-code
status: DRAFT
rank: 1000
permissible_values:
CHR1:
text: CHR1
description: chromosome 1 (Rat)
meaning: CHR:10116-chr1
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005100.4
genbank_accession:
tag: genbank_accession
value: CM000072.5
length_bp:
tag: length_bp
value: 282763074
title: '1'
aliases:
- chr1
CHR2:
text: CHR2
description: chromosome 2 (Rat)
meaning: CHR:10116-chr2
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005101.4
genbank_accession:
tag: genbank_accession
value: CM000073.5
length_bp:
tag: length_bp
value: 266435125
title: '2'
aliases:
- chr2
CHR3:
text: CHR3
description: chromosome 3 (Rat)
meaning: CHR:10116-chr3
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005102.4
genbank_accession:
tag: genbank_accession
value: CM000074.5
length_bp:
tag: length_bp
value: 177699992
title: '3'
aliases:
- chr3
CHR4:
text: CHR4
description: chromosome 4 (Rat)
meaning: CHR:10116-chr4
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005103.4
genbank_accession:
tag: genbank_accession
value: CM000075.5
length_bp:
tag: length_bp
value: 184226339
title: '4'
aliases:
- chr4
CHR5:
text: CHR5
description: chromosome 5 (Rat)
meaning: CHR:10116-chr5
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005104.4
genbank_accession:
tag: genbank_accession
value: CM000076.5
length_bp:
tag: length_bp
value: 173707219
title: '5'
aliases:
- chr5
CHR6:
text: CHR6
description: chromosome 6 (Rat)
meaning: CHR:10116-chr6
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005105.4
genbank_accession:
tag: genbank_accession
value: CM000077.5
length_bp:
tag: length_bp
value: 147991367
title: '6'
aliases:
- chr6
CHR7:
text: CHR7
description: chromosome 7 (Rat)
meaning: CHR:10116-chr7
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005106.4
genbank_accession:
tag: genbank_accession
value: CM000078.5
length_bp:
tag: length_bp
value: 145729302
title: '7'
aliases:
- chr7
CHR8:
text: CHR8
description: chromosome 8 (Rat)
meaning: CHR:10116-chr8
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005107.4
genbank_accession:
tag: genbank_accession
value: CM000079.5
length_bp:
tag: length_bp
value: 133307652
title: '8'
aliases:
- chr8
CHR9:
text: CHR9
description: chromosome 9 (Rat)
meaning: CHR:10116-chr9
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005108.4
genbank_accession:
tag: genbank_accession
value: CM000080.5
length_bp:
tag: length_bp
value: 122095297
title: '9'
aliases:
- chr9
CHR10:
text: CHR10
description: chromosome 10 (Rat)
meaning: CHR:10116-chr10
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005109.4
genbank_accession:
tag: genbank_accession
value: CM000081.5
length_bp:
tag: length_bp
value: 112626471
title: '10'
aliases:
- chr10
CHR11:
text: CHR11
description: chromosome 11 (Rat)
meaning: CHR:10116-chr11
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005110.4
genbank_accession:
tag: genbank_accession
value: CM000082.5
length_bp:
tag: length_bp
value: 90463843
title: '11'
aliases:
- chr11
CHR12:
text: CHR12
description: chromosome 12 (Rat)
meaning: CHR:10116-chr12
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005111.4
genbank_accession:
tag: genbank_accession
value: CM000083.5
length_bp:
tag: length_bp
value: 52716770
title: '12'
aliases:
- chr12
CHR13:
text: CHR13
description: chromosome 13 (Rat)
meaning: CHR:10116-chr13
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005112.4
genbank_accession:
tag: genbank_accession
value: CM000084.5
length_bp:
tag: length_bp
value: 114033958
title: '13'
aliases:
- chr13
CHR14:
text: CHR14
description: chromosome 14 (Rat)
meaning: CHR:10116-chr14
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005113.4
genbank_accession:
tag: genbank_accession
value: CM000085.5
length_bp:
tag: length_bp
value: 115493446
title: '14'
aliases:
- chr14
CHR15:
text: CHR15
description: chromosome 15 (Rat)
meaning: CHR:10116-chr15
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005114.4
genbank_accession:
tag: genbank_accession
value: CM000086.5
length_bp:
tag: length_bp
value: 111246239
title: '15'
aliases:
- chr15
CHR16:
text: CHR16
description: chromosome 16 (Rat)
meaning: CHR:10116-chr16
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005115.4
genbank_accession:
tag: genbank_accession
value: CM000087.5
length_bp:
tag: length_bp
value: 90668790
title: '16'
aliases:
- chr16
CHR17:
text: CHR17
description: chromosome 17 (Rat)
meaning: CHR:10116-chr17
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005116.4
genbank_accession:
tag: genbank_accession
value: CM000088.5
length_bp:
tag: length_bp
value: 90843779
title: '17'
aliases:
- chr17
CHR18:
text: CHR18
description: chromosome 18 (Rat)
meaning: CHR:10116-chr18
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005117.4
genbank_accession:
tag: genbank_accession
value: CM000089.5
length_bp:
tag: length_bp
value: 88201929
title: '18'
aliases:
- chr18
CHR19:
text: CHR19
description: chromosome 19 (Rat)
meaning: CHR:10116-chr19
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005118.4
genbank_accession:
tag: genbank_accession
value: CM000090.5
length_bp:
tag: length_bp
value: 62275575
title: '19'
aliases:
- chr19
CHR20:
text: CHR20
description: chromosome 20 (Rat)
meaning: CHR:10116-chr20
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005119.4
genbank_accession:
tag: genbank_accession
value: CM000091.5
length_bp:
tag: length_bp
value: 56205956
title: '20'
aliases:
- chr20
CHRX:
text: CHRX
description: chromosome X (Rat)
meaning: CHR:10116-chrX
annotations:
refseq_accession:
tag: refseq_accession
value: NC_005120.4
genbank_accession:
tag: genbank_accession
value: CM000092.5
length_bp:
tag: length_bp
value: 159970021
title: X
aliases:
- chrX
CHRY:
text: CHRY
description: chromosome Y (Rat)
meaning: CHR:10116-chrY
annotations:
refseq_accession:
tag: refseq_accession
value: NC_024475.1
genbank_accession:
tag: genbank_accession
value: CM002824.1
length_bp:
tag: length_bp
value: 3310458
title: Y
aliases:
- chrY
CHRM:
text: CHRM
description: chromosome M (Rat)
meaning: CHR:10116-chrM
annotations:
refseq_accession:
tag: refseq_accession
value: NC_001665.2
genbank_accession:
tag: genbank_accession
value: AY172581.1
length_bp:
tag: length_bp
value: 16313
title: M
aliases:
- chrM
- MT
- chrMT