Enum: SequenceModality

Types of sequence data based on experimental method

Permissible Values

Value	Meaning	Description
SINGLE_CELL	None	Single-cell sequencing data
BULK	None	Bulk/population sequencing data
SPATIAL	None	Spatially-resolved sequencing
LONG_READ	None	Long-read sequencing (PacBio, Oxford Nanopore)
SHORT_READ	None	Short-read sequencing (Illumina)
PAIRED_END	None	Paired-end sequencing reads
SINGLE_END	None	Single-end sequencing reads
MATE_PAIR	None	Mate-pair sequencing libraries

Slots

Name	Description
sequence_modality	Types of sequence data based on experimental method

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/valuesets

LinkML Source

name: SequenceModality
description: Types of sequence data based on experimental method
title: Sequence Data Modality
from_schema: https://w3id.org/linkml/valuesets
rank: 1000
permissible_values:
  SINGLE_CELL:
    text: SINGLE_CELL
    description: Single-cell sequencing data
  BULK:
    text: BULK
    description: Bulk/population sequencing data
  SPATIAL:
    text: SPATIAL
    description: Spatially-resolved sequencing
  LONG_READ:
    text: LONG_READ
    description: Long-read sequencing (PacBio, Oxford Nanopore)
  SHORT_READ:
    text: SHORT_READ
    description: Short-read sequencing (Illumina)
  PAIRED_END:
    text: PAIRED_END
    description: Paired-end sequencing reads
  SINGLE_END:
    text: SINGLE_END
    description: Single-end sequencing reads
  MATE_PAIR:
    text: MATE_PAIR
    description: Mate-pair sequencing libraries