Enum: SequencingChemistry

Fundamental chemical methods used for DNA/RNA sequencing

Permissible Values

Value	Meaning	Description
SEQUENCING_BY_SYNTHESIS	OBI:0000734	Sequencing by synthesis (Illumina)
SINGLE_MOLECULE_REAL_TIME	None	Single molecule real-time sequencing (PacBio)
NANOPORE_SEQUENCING	None	Nanopore sequencing (Oxford Nanopore)
PYROSEQUENCING	None	Pyrosequencing (454)
SEQUENCING_BY_LIGATION	OBI:0000723	Sequencing by ligation (SOLiD)
CHAIN_TERMINATION	OBI:0000695	Chain termination method (Sanger)
SEMICONDUCTOR_SEQUENCING	None	Semiconductor/Ion semiconductor sequencing
DNA_NANOBALL_SEQUENCING	None	DNA nanoball sequencing (MGI/BGI)
SEQUENCING_BY_AVIDITY	None	Sequencing by avidity (Element Biosciences)

Slots

Name	Description
sequencing_chemistry	Fundamental chemical methods used for DNA/RNA sequencing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/valuesets

LinkML Source

name: SequencingChemistry
description: Fundamental chemical methods used for DNA/RNA sequencing
title: Sequencing Chemistry Methods
from_schema: https://w3id.org/linkml/valuesets
rank: 1000
permissible_values:
  SEQUENCING_BY_SYNTHESIS:
    text: SEQUENCING_BY_SYNTHESIS
    description: Sequencing by synthesis (Illumina)
    meaning: OBI:0000734
    title: SEQUENCING_BY_SYNTHESIS
    aliases:
    - DNA sequencing by synthesis assay
  SINGLE_MOLECULE_REAL_TIME:
    text: SINGLE_MOLECULE_REAL_TIME
    description: Single molecule real-time sequencing (PacBio)
    title: SINGLE_MOLECULE_REAL_TIME
  NANOPORE_SEQUENCING:
    text: NANOPORE_SEQUENCING
    description: Nanopore sequencing (Oxford Nanopore)
    title: NANOPORE_SEQUENCING
  PYROSEQUENCING:
    text: PYROSEQUENCING
    description: Pyrosequencing (454)
    title: PYROSEQUENCING
  SEQUENCING_BY_LIGATION:
    text: SEQUENCING_BY_LIGATION
    description: Sequencing by ligation (SOLiD)
    meaning: OBI:0000723
    title: SEQUENCING_BY_LIGATION
    aliases:
    - DNA sequencing by ligation assay
  CHAIN_TERMINATION:
    text: CHAIN_TERMINATION
    description: Chain termination method (Sanger)
    meaning: OBI:0000695
    title: CHAIN_TERMINATION
    aliases:
    - chain termination sequencing assay
  SEMICONDUCTOR_SEQUENCING:
    text: SEMICONDUCTOR_SEQUENCING
    description: Semiconductor/Ion semiconductor sequencing
  DNA_NANOBALL_SEQUENCING:
    text: DNA_NANOBALL_SEQUENCING
    description: DNA nanoball sequencing (MGI/BGI)
  SEQUENCING_BY_AVIDITY:
    text: SEQUENCING_BY_AVIDITY
    description: Sequencing by avidity (Element Biosciences)