Enum: SequencingPlatform
Major DNA/RNA sequencing platforms and instruments used in genomics research
URI: valuesets:SequencingPlatform
Permissible Values
| Value | Meaning | Description |
|---|---|---|
| ILLUMINA_HISEQ_2000 | OBI:0002001 | Illumina HiSeq 2000 |
| ILLUMINA_HISEQ_2500 | OBI:0002002 | Illumina HiSeq 2500 |
| ILLUMINA_HISEQ_3000 | OBI:0002048 | Illumina HiSeq 3000 |
| ILLUMINA_HISEQ_4000 | OBI:0002049 | Illumina HiSeq 4000 |
| ILLUMINA_HISEQ_X | OBI:0002129 | Illumina HiSeq X |
| ILLUMINA_NOVASEQ_6000 | OBI:0002630 | Illumina NovaSeq 6000 |
| ILLUMINA_NEXTSEQ_500 | OBI:0002021 | Illumina NextSeq 500 |
| ILLUMINA_NEXTSEQ_550 | OBI:0003387 | Illumina NextSeq 550 |
| ILLUMINA_NEXTSEQ_1000 | None | Illumina NextSeq 1000 |
| ILLUMINA_NEXTSEQ_2000 | None | Illumina NextSeq 2000 |
| ILLUMINA_MISEQ | OBI:0002003 | Illumina MiSeq |
| ILLUMINA_ISEQ_100 | None | Illumina iSeq 100 |
| PACBIO_RS | None | PacBio RS |
| PACBIO_RS_II | OBI:0002012 | PacBio RS II |
| PACBIO_SEQUEL | OBI:0002632 | PacBio Sequel |
| PACBIO_SEQUEL_II | OBI:0002633 | PacBio Sequel II |
| PACBIO_REVIO | None | PacBio Revio |
| NANOPORE_MINION | OBI:0002750 | Oxford Nanopore MinION |
| NANOPORE_GRIDION | OBI:0002751 | Oxford Nanopore GridION |
| NANOPORE_PROMETHION | OBI:0002752 | Oxford Nanopore PromethION |
| NANOPORE_FLONGLE | None | Oxford Nanopore Flongle |
| ELEMENT_AVITI | None | Element Biosciences AVITI |
| MGI_DNBSEQ_T7 | None | MGI DNBSEQ-T7 |
| MGI_DNBSEQ_G400 | None | MGI DNBSEQ-G400 |
| MGI_DNBSEQ_G50 | None | MGI DNBSEQ-G50 |
| SANGER_SEQUENCING | OBI:0000695 | Sanger chain termination sequencing |
| ROCHE_454_GS | OBI:0000702 | Roche 454 Genome Sequencer |
| LIFE_TECHNOLOGIES_ION_TORRENT | None | Life Technologies Ion Torrent |
| ABI_SOLID | None | ABI SOLiD |
Slots
| Name | Description |
|---|---|
| sequencing_platform | Major DNA/RNA sequencing platforms and instruments used in genomics research |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/linkml/valuesets
LinkML Source
name: SequencingPlatform
description: Major DNA/RNA sequencing platforms and instruments used in genomics research
title: Sequencing Platforms and Instruments
from_schema: https://w3id.org/linkml/valuesets
rank: 1000
permissible_values:
ILLUMINA_HISEQ_2000:
text: ILLUMINA_HISEQ_2000
description: Illumina HiSeq 2000
meaning: OBI:0002001
annotations:
manufacturer:
tag: manufacturer
value: Illumina
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by synthesis
ILLUMINA_HISEQ_2500:
text: ILLUMINA_HISEQ_2500
description: Illumina HiSeq 2500
meaning: OBI:0002002
annotations:
manufacturer:
tag: manufacturer
value: Illumina
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by synthesis
ILLUMINA_HISEQ_3000:
text: ILLUMINA_HISEQ_3000
description: Illumina HiSeq 3000
meaning: OBI:0002048
annotations:
manufacturer:
tag: manufacturer
value: Illumina
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by synthesis
ILLUMINA_HISEQ_4000:
text: ILLUMINA_HISEQ_4000
description: Illumina HiSeq 4000
meaning: OBI:0002049
annotations:
manufacturer:
tag: manufacturer
value: Illumina
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by synthesis
ILLUMINA_HISEQ_X:
text: ILLUMINA_HISEQ_X
description: Illumina HiSeq X
meaning: OBI:0002129
annotations:
manufacturer:
tag: manufacturer
value: Illumina
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by synthesis
aliases:
- Illumina HiSeq X Ten
ILLUMINA_NOVASEQ_6000:
text: ILLUMINA_NOVASEQ_6000
description: Illumina NovaSeq 6000
meaning: OBI:0002630
annotations:
manufacturer:
tag: manufacturer
value: Illumina
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by synthesis
ILLUMINA_NEXTSEQ_500:
text: ILLUMINA_NEXTSEQ_500
description: Illumina NextSeq 500
meaning: OBI:0002021
annotations:
manufacturer:
tag: manufacturer
value: Illumina
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by synthesis
ILLUMINA_NEXTSEQ_550:
text: ILLUMINA_NEXTSEQ_550
description: Illumina NextSeq 550
meaning: OBI:0003387
annotations:
manufacturer:
tag: manufacturer
value: Illumina
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by synthesis
ILLUMINA_NEXTSEQ_1000:
text: ILLUMINA_NEXTSEQ_1000
description: Illumina NextSeq 1000
annotations:
manufacturer:
tag: manufacturer
value: Illumina
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by synthesis
ILLUMINA_NEXTSEQ_2000:
text: ILLUMINA_NEXTSEQ_2000
description: Illumina NextSeq 2000
annotations:
manufacturer:
tag: manufacturer
value: Illumina
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by synthesis
ILLUMINA_MISEQ:
text: ILLUMINA_MISEQ
description: Illumina MiSeq
meaning: OBI:0002003
annotations:
manufacturer:
tag: manufacturer
value: Illumina
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by synthesis
ILLUMINA_ISEQ_100:
text: ILLUMINA_ISEQ_100
description: Illumina iSeq 100
annotations:
manufacturer:
tag: manufacturer
value: Illumina
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by synthesis
PACBIO_RS:
text: PACBIO_RS
description: PacBio RS
annotations:
manufacturer:
tag: manufacturer
value: Pacific Biosciences
read_type:
tag: read_type
value: long
chemistry:
tag: chemistry
value: single molecule real time
PACBIO_RS_II:
text: PACBIO_RS_II
description: PacBio RS II
meaning: OBI:0002012
annotations:
manufacturer:
tag: manufacturer
value: Pacific Biosciences
read_type:
tag: read_type
value: long
chemistry:
tag: chemistry
value: single molecule real time
PACBIO_SEQUEL:
text: PACBIO_SEQUEL
description: PacBio Sequel
meaning: OBI:0002632
annotations:
manufacturer:
tag: manufacturer
value: Pacific Biosciences
read_type:
tag: read_type
value: long
chemistry:
tag: chemistry
value: single molecule real time
PACBIO_SEQUEL_II:
text: PACBIO_SEQUEL_II
description: PacBio Sequel II
meaning: OBI:0002633
annotations:
manufacturer:
tag: manufacturer
value: Pacific Biosciences
read_type:
tag: read_type
value: long
chemistry:
tag: chemistry
value: single molecule real time
PACBIO_REVIO:
text: PACBIO_REVIO
description: PacBio Revio
annotations:
manufacturer:
tag: manufacturer
value: Pacific Biosciences
read_type:
tag: read_type
value: long
chemistry:
tag: chemistry
value: single molecule real time
NANOPORE_MINION:
text: NANOPORE_MINION
description: Oxford Nanopore MinION
meaning: OBI:0002750
annotations:
manufacturer:
tag: manufacturer
value: Oxford Nanopore Technologies
read_type:
tag: read_type
value: long
chemistry:
tag: chemistry
value: nanopore sequencing
aliases:
- Oxford Nanopore MinION
NANOPORE_GRIDION:
text: NANOPORE_GRIDION
description: Oxford Nanopore GridION
meaning: OBI:0002751
annotations:
manufacturer:
tag: manufacturer
value: Oxford Nanopore Technologies
read_type:
tag: read_type
value: long
chemistry:
tag: chemistry
value: nanopore sequencing
aliases:
- Oxford Nanopore GridION Mk1
NANOPORE_PROMETHION:
text: NANOPORE_PROMETHION
description: Oxford Nanopore PromethION
meaning: OBI:0002752
annotations:
manufacturer:
tag: manufacturer
value: Oxford Nanopore Technologies
read_type:
tag: read_type
value: long
chemistry:
tag: chemistry
value: nanopore sequencing
aliases:
- Oxford Nanopore PromethION
NANOPORE_FLONGLE:
text: NANOPORE_FLONGLE
description: Oxford Nanopore Flongle
annotations:
manufacturer:
tag: manufacturer
value: Oxford Nanopore Technologies
read_type:
tag: read_type
value: long
chemistry:
tag: chemistry
value: nanopore sequencing
ELEMENT_AVITI:
text: ELEMENT_AVITI
description: Element Biosciences AVITI
annotations:
manufacturer:
tag: manufacturer
value: Element Biosciences
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by avidity
MGI_DNBSEQ_T7:
text: MGI_DNBSEQ_T7
description: MGI DNBSEQ-T7
annotations:
manufacturer:
tag: manufacturer
value: MGI/BGI
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: DNA nanoball sequencing
MGI_DNBSEQ_G400:
text: MGI_DNBSEQ_G400
description: MGI DNBSEQ-G400
annotations:
manufacturer:
tag: manufacturer
value: MGI/BGI
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: DNA nanoball sequencing
MGI_DNBSEQ_G50:
text: MGI_DNBSEQ_G50
description: MGI DNBSEQ-G50
annotations:
manufacturer:
tag: manufacturer
value: MGI/BGI
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: DNA nanoball sequencing
SANGER_SEQUENCING:
text: SANGER_SEQUENCING
description: Sanger chain termination sequencing
meaning: OBI:0000695
annotations:
manufacturer:
tag: manufacturer
value: Various
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: chain termination
aliases:
- chain termination sequencing assay
ROCHE_454_GS:
text: ROCHE_454_GS
description: Roche 454 Genome Sequencer
meaning: OBI:0000702
annotations:
manufacturer:
tag: manufacturer
value: Roche/454
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: pyrosequencing
status:
tag: status
value: discontinued
aliases:
- 454 Genome Sequencer FLX
LIFE_TECHNOLOGIES_ION_TORRENT:
text: LIFE_TECHNOLOGIES_ION_TORRENT
description: Life Technologies Ion Torrent
annotations:
manufacturer:
tag: manufacturer
value: Life Technologies/Thermo Fisher
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: semiconductor sequencing
ABI_SOLID:
text: ABI_SOLID
description: ABI SOLiD
annotations:
manufacturer:
tag: manufacturer
value: Life Technologies/Applied Biosystems
read_type:
tag: read_type
value: short
chemistry:
tag: chemistry
value: sequencing by ligation
status:
tag: status
value: discontinued