Enum: WorkflowType

Types of computational processing workflows

Permissible Values

Value	Meaning	Description
MOTION_CORRECTION	None	Motion correction for cryo-EM movies
CTF_ESTIMATION	None	Contrast transfer function estimation
PARTICLE_PICKING	None	Particle picking from micrographs
CLASSIFICATION_2D	None	2D classification of particles
CLASSIFICATION_3D	None	3D classification of particles
REFINEMENT_3D	None	3D refinement of particle orientations
MODEL_BUILDING	None	Atomic model building into density
MODEL_REFINEMENT	None	Atomic model refinement
PHASING	None	Phase determination for crystallography
DATA_INTEGRATION	None	Integration of diffraction data
DATA_SCALING	None	Scaling and merging of diffraction data
SAXS_ANALYSIS	None	SAXS data analysis and modeling

Slots

Name	Description
workflow	Types of computational processing workflows

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/valuesets

LinkML Source

name: WorkflowType
description: Types of computational processing workflows
from_schema: https://w3id.org/linkml/valuesets
rank: 1000
permissible_values:
  MOTION_CORRECTION:
    text: MOTION_CORRECTION
    description: Motion correction for cryo-EM movies
    annotations:
      software:
        tag: software
        value: MotionCorr, Unblur, RELION
  CTF_ESTIMATION:
    text: CTF_ESTIMATION
    description: Contrast transfer function estimation
    annotations:
      software:
        tag: software
        value: CTFFIND, Gctf, RELION
  PARTICLE_PICKING:
    text: PARTICLE_PICKING
    description: Particle picking from micrographs
    annotations:
      methods:
        tag: methods
        value: template matching, deep learning
      software:
        tag: software
        value: RELION, cryoSPARC, Topaz
  CLASSIFICATION_2D:
    text: CLASSIFICATION_2D
    description: 2D classification of particles
    annotations:
      purpose:
        tag: purpose
        value: sorting, cleaning particle dataset
  CLASSIFICATION_3D:
    text: CLASSIFICATION_3D
    description: 3D classification of particles
    annotations:
      purpose:
        tag: purpose
        value: conformational sorting, resolution improvement
  REFINEMENT_3D:
    text: REFINEMENT_3D
    description: 3D refinement of particle orientations
    annotations:
      algorithms:
        tag: algorithms
        value: expectation maximization, gradient descent
  MODEL_BUILDING:
    text: MODEL_BUILDING
    description: Atomic model building into density
    annotations:
      software:
        tag: software
        value: Coot, ChimeraX, Isolde
  MODEL_REFINEMENT:
    text: MODEL_REFINEMENT
    description: Atomic model refinement
    annotations:
      software:
        tag: software
        value: PHENIX, REFMAC, Buster
  PHASING:
    text: PHASING
    description: Phase determination for crystallography
    annotations:
      methods:
        tag: methods
        value: SAD, MAD, MR, MIR
  DATA_INTEGRATION:
    text: DATA_INTEGRATION
    description: Integration of diffraction data
    annotations:
      software:
        tag: software
        value: XDS, DIALS, HKL
  DATA_SCALING:
    text: DATA_SCALING
    description: Scaling and merging of diffraction data
    annotations:
      software:
        tag: software
        value: SCALA, AIMLESS, XSCALE
  SAXS_ANALYSIS:
    text: SAXS_ANALYSIS
    description: SAXS data analysis and modeling
    annotations:
      software:
        tag: software
        value: PRIMUS, CRYSOL, FoXS