Enum: ZebrafishChromosome
Nuclear and mitochondrial chromosomes of Danio rerio (zebrafish), as represented in the Monochrom Ontology (CHR). Sequence lengths and accessions are from the UCSC danRer11 assembly.
URI: valuesets:ZebrafishChromosome
Permissible Values
| Value | Title | Meaning | Description | Genbank Accession | Length Bp | Refseq Accession |
|---|---|---|---|---|---|---|
| CHR1 | 1 | CHR:7955-chr1 | chromosome 1 (Danio rerio) | CM002885.2 | 59578282 | NC_007112.7 |
| CHR2 | 2 | CHR:7955-chr2 | chromosome 2 (Danio rerio) | CM002886.2 | 59640629 | NC_007113.7 |
| CHR3 | 3 | CHR:7955-chr3 | chromosome 3 (Danio rerio) | CM002887.2 | 62628489 | NC_007114.7 |
| CHR4 | 4 | CHR:7955-chr4 | chromosome 4 (Danio rerio) | CM002888.2 | 78093715 | NC_007115.7 |
| CHR5 | 5 | CHR:7955-chr5 | chromosome 5 (Danio rerio) | CM002889.2 | 72500376 | NC_007116.7 |
| CHR6 | 6 | CHR:7955-chr6 | chromosome 6 (Danio rerio) | CM002890.2 | 60270059 | NC_007117.7 |
| CHR7 | 7 | CHR:7955-chr7 | chromosome 7 (Danio rerio) | CM002891.2 | 74282399 | NC_007118.7 |
| CHR8 | 8 | CHR:7955-chr8 | chromosome 8 (Danio rerio) | CM002892.2 | 54304671 | NC_007119.7 |
| CHR9 | 9 | CHR:7955-chr9 | chromosome 9 (Danio rerio) | CM002893.2 | 56459846 | NC_007120.7 |
| CHR10 | 10 | CHR:7955-chr10 | chromosome 10 (Danio rerio) | CM002894.2 | 45420867 | NC_007121.7 |
| CHR11 | 11 | CHR:7955-chr11 | chromosome 11 (Danio rerio) | CM002895.2 | 45484837 | NC_007122.7 |
| CHR12 | 12 | CHR:7955-chr12 | chromosome 12 (Danio rerio) | CM002896.2 | 49182954 | NC_007123.7 |
| CHR13 | 13 | CHR:7955-chr13 | chromosome 13 (Danio rerio) | CM002897.2 | 52186027 | NC_007124.7 |
| CHR14 | 14 | CHR:7955-chr14 | chromosome 14 (Danio rerio) | CM002898.2 | 52660232 | NC_007125.7 |
| CHR15 | 15 | CHR:7955-chr15 | chromosome 15 (Danio rerio) | CM002899.2 | 48040578 | NC_007126.7 |
| CHR16 | 16 | CHR:7955-chr16 | chromosome 16 (Danio rerio) | CM002900.2 | 55266484 | NC_007127.7 |
| CHR17 | 17 | CHR:7955-chr17 | chromosome 17 (Danio rerio) | CM002901.2 | 53461100 | NC_007128.7 |
| CHR18 | 18 | CHR:7955-chr18 | chromosome 18 (Danio rerio) | CM002902.2 | 51023478 | NC_007129.7 |
| CHR19 | 19 | CHR:7955-chr19 | chromosome 19 (Danio rerio) | CM002903.2 | 48449771 | NC_007130.7 |
| CHR20 | 20 | CHR:7955-chr20 | chromosome 20 (Danio rerio) | CM002904.2 | 55201332 | NC_007131.7 |
| CHR21 | 21 | CHR:7955-chr21 | chromosome 21 (Danio rerio) | CM002905.2 | 45934066 | NC_007132.7 |
| CHR22 | 22 | CHR:7955-chr22 | chromosome 22 (Danio rerio) | CM002906.2 | 39133080 | NC_007133.7 |
| CHR23 | 23 | CHR:7955-chr23 | chromosome 23 (Danio rerio) | CM002907.2 | 46223584 | NC_007134.7 |
| CHR24 | 24 | CHR:7955-chr24 | chromosome 24 (Danio rerio) | CM002908.2 | 42172926 | NC_007135.7 |
| CHR25 | 25 | CHR:7955-chr25 | chromosome 25 (Danio rerio) | CM002909.2 | 37502051 | NC_007136.7 |
| CHRM | M | CHR:7955-chrM | chromosome M (Danio rerio) | AC024175.3 | 16596 | NC_002333.2 |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| source_ontology | http://purl.obolibrary.org/obo/chr.owl |
| taxon | NCBITaxon:7955 |
Schema Source
- from schema: https://w3id.org/valuesets
LinkML Source
name: ZebrafishChromosome
instantiates:
- valuesets_meta:ValueSetEnumDefinition
annotations:
source_ontology:
tag: source_ontology
value: http://purl.obolibrary.org/obo/chr.owl
taxon:
tag: taxon
value: NCBITaxon:7955
description: Nuclear and mitochondrial chromosomes of Danio rerio (zebrafish), as
represented in the Monochrom Ontology (CHR). Sequence lengths and accessions are
from the UCSC danRer11 assembly.
title: Danio rerio Chromosome
from_schema: https://w3id.org/valuesets
contributors:
- orcid:0000-0002-6601-2165
- https://github.com/anthropics/claude-code
status: DRAFT
rank: 1000
permissible_values:
CHR1:
text: CHR1
description: chromosome 1 (Danio rerio)
meaning: CHR:7955-chr1
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007112.7
genbank_accession:
tag: genbank_accession
value: CM002885.2
length_bp:
tag: length_bp
value: 59578282
title: '1'
aliases:
- chr1
CHR2:
text: CHR2
description: chromosome 2 (Danio rerio)
meaning: CHR:7955-chr2
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007113.7
genbank_accession:
tag: genbank_accession
value: CM002886.2
length_bp:
tag: length_bp
value: 59640629
title: '2'
aliases:
- chr2
CHR3:
text: CHR3
description: chromosome 3 (Danio rerio)
meaning: CHR:7955-chr3
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007114.7
genbank_accession:
tag: genbank_accession
value: CM002887.2
length_bp:
tag: length_bp
value: 62628489
title: '3'
aliases:
- chr3
CHR4:
text: CHR4
description: chromosome 4 (Danio rerio)
meaning: CHR:7955-chr4
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007115.7
genbank_accession:
tag: genbank_accession
value: CM002888.2
length_bp:
tag: length_bp
value: 78093715
title: '4'
aliases:
- chr4
CHR5:
text: CHR5
description: chromosome 5 (Danio rerio)
meaning: CHR:7955-chr5
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007116.7
genbank_accession:
tag: genbank_accession
value: CM002889.2
length_bp:
tag: length_bp
value: 72500376
title: '5'
aliases:
- chr5
CHR6:
text: CHR6
description: chromosome 6 (Danio rerio)
meaning: CHR:7955-chr6
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007117.7
genbank_accession:
tag: genbank_accession
value: CM002890.2
length_bp:
tag: length_bp
value: 60270059
title: '6'
aliases:
- chr6
CHR7:
text: CHR7
description: chromosome 7 (Danio rerio)
meaning: CHR:7955-chr7
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007118.7
genbank_accession:
tag: genbank_accession
value: CM002891.2
length_bp:
tag: length_bp
value: 74282399
title: '7'
aliases:
- chr7
CHR8:
text: CHR8
description: chromosome 8 (Danio rerio)
meaning: CHR:7955-chr8
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007119.7
genbank_accession:
tag: genbank_accession
value: CM002892.2
length_bp:
tag: length_bp
value: 54304671
title: '8'
aliases:
- chr8
CHR9:
text: CHR9
description: chromosome 9 (Danio rerio)
meaning: CHR:7955-chr9
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007120.7
genbank_accession:
tag: genbank_accession
value: CM002893.2
length_bp:
tag: length_bp
value: 56459846
title: '9'
aliases:
- chr9
CHR10:
text: CHR10
description: chromosome 10 (Danio rerio)
meaning: CHR:7955-chr10
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007121.7
genbank_accession:
tag: genbank_accession
value: CM002894.2
length_bp:
tag: length_bp
value: 45420867
title: '10'
aliases:
- chr10
CHR11:
text: CHR11
description: chromosome 11 (Danio rerio)
meaning: CHR:7955-chr11
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007122.7
genbank_accession:
tag: genbank_accession
value: CM002895.2
length_bp:
tag: length_bp
value: 45484837
title: '11'
aliases:
- chr11
CHR12:
text: CHR12
description: chromosome 12 (Danio rerio)
meaning: CHR:7955-chr12
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007123.7
genbank_accession:
tag: genbank_accession
value: CM002896.2
length_bp:
tag: length_bp
value: 49182954
title: '12'
aliases:
- chr12
CHR13:
text: CHR13
description: chromosome 13 (Danio rerio)
meaning: CHR:7955-chr13
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007124.7
genbank_accession:
tag: genbank_accession
value: CM002897.2
length_bp:
tag: length_bp
value: 52186027
title: '13'
aliases:
- chr13
CHR14:
text: CHR14
description: chromosome 14 (Danio rerio)
meaning: CHR:7955-chr14
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007125.7
genbank_accession:
tag: genbank_accession
value: CM002898.2
length_bp:
tag: length_bp
value: 52660232
title: '14'
aliases:
- chr14
CHR15:
text: CHR15
description: chromosome 15 (Danio rerio)
meaning: CHR:7955-chr15
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007126.7
genbank_accession:
tag: genbank_accession
value: CM002899.2
length_bp:
tag: length_bp
value: 48040578
title: '15'
aliases:
- chr15
CHR16:
text: CHR16
description: chromosome 16 (Danio rerio)
meaning: CHR:7955-chr16
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007127.7
genbank_accession:
tag: genbank_accession
value: CM002900.2
length_bp:
tag: length_bp
value: 55266484
title: '16'
aliases:
- chr16
CHR17:
text: CHR17
description: chromosome 17 (Danio rerio)
meaning: CHR:7955-chr17
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007128.7
genbank_accession:
tag: genbank_accession
value: CM002901.2
length_bp:
tag: length_bp
value: 53461100
title: '17'
aliases:
- chr17
CHR18:
text: CHR18
description: chromosome 18 (Danio rerio)
meaning: CHR:7955-chr18
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007129.7
genbank_accession:
tag: genbank_accession
value: CM002902.2
length_bp:
tag: length_bp
value: 51023478
title: '18'
aliases:
- chr18
CHR19:
text: CHR19
description: chromosome 19 (Danio rerio)
meaning: CHR:7955-chr19
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007130.7
genbank_accession:
tag: genbank_accession
value: CM002903.2
length_bp:
tag: length_bp
value: 48449771
title: '19'
aliases:
- chr19
CHR20:
text: CHR20
description: chromosome 20 (Danio rerio)
meaning: CHR:7955-chr20
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007131.7
genbank_accession:
tag: genbank_accession
value: CM002904.2
length_bp:
tag: length_bp
value: 55201332
title: '20'
aliases:
- chr20
CHR21:
text: CHR21
description: chromosome 21 (Danio rerio)
meaning: CHR:7955-chr21
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007132.7
genbank_accession:
tag: genbank_accession
value: CM002905.2
length_bp:
tag: length_bp
value: 45934066
title: '21'
aliases:
- chr21
CHR22:
text: CHR22
description: chromosome 22 (Danio rerio)
meaning: CHR:7955-chr22
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007133.7
genbank_accession:
tag: genbank_accession
value: CM002906.2
length_bp:
tag: length_bp
value: 39133080
title: '22'
aliases:
- chr22
CHR23:
text: CHR23
description: chromosome 23 (Danio rerio)
meaning: CHR:7955-chr23
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007134.7
genbank_accession:
tag: genbank_accession
value: CM002907.2
length_bp:
tag: length_bp
value: 46223584
title: '23'
aliases:
- chr23
CHR24:
text: CHR24
description: chromosome 24 (Danio rerio)
meaning: CHR:7955-chr24
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007135.7
genbank_accession:
tag: genbank_accession
value: CM002908.2
length_bp:
tag: length_bp
value: 42172926
title: '24'
aliases:
- chr24
CHR25:
text: CHR25
description: chromosome 25 (Danio rerio)
meaning: CHR:7955-chr25
annotations:
refseq_accession:
tag: refseq_accession
value: NC_007136.7
genbank_accession:
tag: genbank_accession
value: CM002909.2
length_bp:
tag: length_bp
value: 37502051
title: '25'
aliases:
- chr25
CHRM:
text: CHRM
description: chromosome M (Danio rerio)
meaning: CHR:7955-chrM
annotations:
refseq_accession:
tag: refseq_accession
value: NC_002333.2
genbank_accession:
tag: genbank_accession
value: AC024175.3
length_bp:
tag: length_bp
value: 16596
title: M
aliases:
- chrM
- MT
- chrMT