Class: MaterialEntity
Physical entity that is an input our output of a process from a Subject
URI: cmdr:MaterialEntity
classDiagram
class MaterialEntity
MaterialEntity : concentration
MaterialEntity --|> Quantity : concentration
MaterialEntity : id
MaterialEntity : name
MaterialEntity : source
MaterialEntity --|> Subject : source
MaterialEntity : used_in
MaterialEntity --|> Investigation : used_in
MaterialEntity : volume
MaterialEntity --|> Quantity : volume
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
id | 1..1 Uriorcurie |
direct | |
name | 0..1 String |
direct | |
used_in | 0..* Investigation |
direct | |
source | 0..1 Subject |
direct | |
volume | 0..1 Quantity |
direct | |
concentration | 0..1 Quantity |
direct |
Usages
used by | used in | type | used |
---|---|---|---|
Container | materials | range | MaterialEntity |
MaterialProcessing | has_input | range | MaterialEntity |
MaterialProcessing | has_output | range | MaterialEntity |
SpecimenCollectionProcess | has_output | range | MaterialEntity |
Aliases
- Substance
- Specimen
- Sample
- Biospecimen
- Biosample
See Also
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/linkml/cmdr
Mappings
Mapping Type | Mapped Value |
---|---|
self | cmdr:MaterialEntity |
native | cmdr:MaterialEntity |
LinkML Source
Direct
name: MaterialEntity
description: Physical entity that is an input our output of a process from a Subject
from_schema: https://w3id.org/linkml/cmdr
see_also:
- include:Biospecimen
aliases:
- Substance
- Specimen
- Sample
- Biospecimen
- Biosample
slots:
- id
- name
- used_in
- source
- volume
- concentration
slot_usage:
concentration:
name: concentration
domain_of:
- MaterialEntity
range: Quantity
id:
name: id
identifier: true
domain_of:
- Investigation
- MaterialEntity
- Participation
- Process
- Subject
range: uriorcurie
source:
name: source
comments:
- this is a shortcut. to be expanded later.
domain_of:
- MaterialEntity
range: Subject
used_in:
name: used_in
multivalued: true
domain_of:
- MaterialEntity
range: Investigation
volume:
name: volume
domain_of:
- MaterialEntity
range: Quantity
Induced
name: MaterialEntity
description: Physical entity that is an input our output of a process from a Subject
from_schema: https://w3id.org/linkml/cmdr
see_also:
- include:Biospecimen
aliases:
- Substance
- Specimen
- Sample
- Biospecimen
- Biosample
slot_usage:
concentration:
name: concentration
domain_of:
- MaterialEntity
range: Quantity
id:
name: id
identifier: true
domain_of:
- Investigation
- MaterialEntity
- Participation
- Process
- Subject
range: uriorcurie
source:
name: source
comments:
- this is a shortcut. to be expanded later.
domain_of:
- MaterialEntity
range: Subject
used_in:
name: used_in
multivalued: true
domain_of:
- MaterialEntity
range: Investigation
volume:
name: volume
domain_of:
- MaterialEntity
range: Quantity
attributes:
id:
name: id
from_schema: https://w3id.org/linkml/cmdr
rank: 1000
identifier: true
alias: id
owner: MaterialEntity
domain_of:
- Investigation
- MaterialEntity
- Participation
- Process
- Subject
range: uriorcurie
name:
name: name
from_schema: https://w3id.org/linkml/cmdr
rank: 1000
alias: name
owner: MaterialEntity
domain_of:
- Investigation
- MaterialEntity
- Participation
- Process
- Subject
range: string
used_in:
name: used_in
from_schema: https://w3id.org/linkml/cmdr
rank: 1000
multivalued: true
alias: used_in
owner: MaterialEntity
domain_of:
- MaterialEntity
range: Investigation
source:
name: source
comments:
- this is a shortcut. to be expanded later.
from_schema: https://w3id.org/linkml/cmdr
rank: 1000
alias: source
owner: MaterialEntity
domain_of:
- MaterialEntity
range: Subject
volume:
name: volume
from_schema: https://w3id.org/linkml/cmdr
rank: 1000
alias: volume
owner: MaterialEntity
domain_of:
- MaterialEntity
range: Quantity
concentration:
name: concentration
from_schema: https://w3id.org/linkml/cmdr
rank: 1000
alias: concentration
owner: MaterialEntity
domain_of:
- MaterialEntity
range: Quantity