LinkML Schema Automator

Schema Automator is a toolkit for bootstrapping and automatically enhancing schemas from a variety of sources.

Use cases include:

  1. Inferring an initial schema or data dictionary from a dataset that is a collection of TSVs

  2. Automatically annotating schema elements and enumerations using the BioPortal annotator

  3. Importing from a language like RDFS/OWL

The primary output of Schema Automator is a LinkML Schema. This can be converted to other schema frameworks, including:

  • JSON-Schema



  • ShEx


  • Python dataclasses or Pydantic

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