Schema Automator

Overview

Schema Automator is a toolkit within the LinkML ecosystem that assists with generating LinkML schemas from structured and semi-structured sources.

Installation

The pyproject.toml file includes Schema Automator as a dependency. If you have already followed the Getting Started instructions, it is already installed.

Usage

To test Schema Automator as a stand-alone tool on a file in the toy_data directory:

uv run schemauto generalize-tsv toy_data/initial/study.tsv -n StudyInfo -o study_toy_data_schema.yaml

Help

To see a full list of commands:

uv run schemauto --help

To see arguments for the generalize-tsv command:

uv run schemauto generalize-tsv --help

Issues for Schema Automator can be submitted via the GitHub issue tracker.