The LinkML Ecosystem#
LinkML is part of a growing ecosystem of tools; these may be at varying levels of maturity
Tools that build off LinkML#
Data Harmonizer#
DataHarmonizer is a ontology-based curation tool that is being adapter to LinkML
Koza#
Koza is a data transformation framework for LinkML models
Schemasheets#
Schemasheets allows the specification of schemas via excel and google sheets
Bootstrapping Models#
schema-automator bootstraps schemas from existing structured and semi-structured sources
Templated OWL generation#
linkml-owl allows schemas to be used as templates for generating OWL ontologies from LinkML data
Datalog reasoning#
linkml-datalog allows rule-based reasoning over linkml data
SPARQL templates#
sparqlfun is a framework for generating and executing queries against sparql endpoints
Ontology Access Kit#
OAK is a Python library for accessing ontologies and vocabularies
SSSOM-py#
sssom-py is a toolkit for managing mappings and is driven by a linkml schema