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linkml-store documentation
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linkml-store documentation

Contents:

  • About
  • Tutorials
    • Tutorial: Using the Command Line Interface
    • Tutorial: Using the Python API
  • How-To Guides
    • How to use MongoDB with LinkML-Store
    • How to use Semantic Search
    • How to query the Monarch-KG
    • How to query Solr using the Command Line
    • How to use Neo4J with LinkML-Store
    • How to Check Referential Integrity
    • Example: Storing an ontology
    • How to index Phenopackets with LinkML-Store
    • How to index GO-CAMs with LinkML-Store
    • How to predict missing data
    • Perform RAG Inference
  • Reference
    • API
    • Adapters
      • linkml_store.api.stores.duckdb package
        • linkml_store.api.stores.duckdb.duckdb_collection module
        • linkml_store.api.stores.duckdb.duckdb_database module
        • linkml_store.api.stores.duckdb.mappings module
      • linkml_store.api.stores.mongodb package
        • linkml_store.api.stores.mongodb.mongodb_collection module
        • linkml_store.api.stores.mongodb.mongodb_database module
      • linkml_store.api.stores.filesystem package
        • linkml_store.api.stores.filesystem.filesystem_collection module
        • linkml_store.api.stores.filesystem.filesystem_database module
      • linkml_store.api.stores.solr package
        • linkml_store.api.stores.solr.solr_collection module
        • linkml_store.api.stores.solr.solr_database module
        • linkml_store.api.stores.solr.solr_utils module
      • linkml_store.api.stores.hdf5 package
        • linkml_store.api.stores.hdf5.hdf5_collection module
        • linkml_store.api.stores.hdf5.hdf5_database module
      • linkml_store.api.stores.chromadb package
        • linkml_store.api.stores.chromadb.chromadb_collection module
        • linkml_store.api.stores.chromadb.chromadb_database module
  • Indices and tables
  • Frequently Asked Questions
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Adapters

Subpackages

  • linkml_store.api.stores.duckdb package
    • DuckDBCollection
    • DuckDBDatabase
    • Submodules
  • linkml_store.api.stores.mongodb package
    • MongoDBCollection
    • MongoDBDatabase
    • Submodules
  • linkml_store.api.stores.filesystem package
    • FileSystemCollection
    • FileSystemDatabase
    • Submodules
  • linkml_store.api.stores.solr package
    • Submodules
  • linkml_store.api.stores.hdf5 package
    • Submodules
  • linkml_store.api.stores.chromadb package
    • Submodules
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