Index

_

__init__() (ChromaDBDatabase method) (Client method) (Collection method) (Database method) (DuckDBCollection method), [1] (DuckDBDatabase method), [1] (FileSystemCollection method), [1] (FileSystemDatabase method), [1] (HDF5Database method) (MongoDBDatabase method), [1] (SolrDatabase method)

A

alias (Collection property) (Database property) Any (MongoDBCollection attribute), [1]

apply_patches() (Collection method) attach_database() (Client method) attach_indexer() (Collection method)

B

base_dir (Client property)

base_url (SolrDatabase attribute) broadcast() (Database method)

C

ChromaDBCollection (class in linkml_store.api.stores.chromadb.chromadb_collection) ChromaDBDatabase (class in linkml_store.api.stores.chromadb.chromadb_database) class_definition() (Collection method) client (ChromaDBDatabase property) Client (class in linkml_store.api.client) close() (ChromaDBDatabase method) (Database method) (DuckDBDatabase method), [1] (FileSystemDatabase method), [1] (HDF5Database method) (MongoDBDatabase method), [1] Collection (class in linkml_store.api.collection) collection_class (ChromaDBDatabase attribute) (Database attribute) (DuckDBDatabase attribute), [1] (FileSystemDatabase attribute), [1] (HDF5Database attribute) (MongoDBDatabase attribute), [1] (SolrDatabase attribute)

commit() (ChromaDBDatabase method) (Collection method) (Database method) (DuckDBDatabase method), [1] (FileSystemCollection method), [1] (HDF5Database method) (MongoDBDatabase method), [1] create_collection() (Database method) (SolrDatabase method)

D

Database (class in linkml_store.api.database) databases (Client property) default_file_format (FileSystemDatabase attribute), [1] default_index_name (Collection attribute) delete() (ChromaDBCollection method) (Collection method) (DuckDBCollection method), [1] (FileSystemCollection method), [1] (HDF5Collection method) (MongoDBCollection method), [1] delete_where() (ChromaDBCollection method) (Collection method) (DuckDBCollection method), [1] (FileSystemCollection method), [1] (HDF5Collection method) (MongoDBCollection method), [1]

Dict (MongoDBCollection attribute), [1] diff() (Collection method) directory_path (FileSystemDatabase attribute), [1] drop() (Database method) (DuckDBDatabase method), [1] (FileSystemDatabase method), [1] (MongoDBDatabase method), [1] drop_all_databases() (Client method) drop_database() (Client method) DuckDBCollection (class in linkml_store.api.stores.duckdb) (class in linkml_store.api.stores.duckdb.duckdb_collection) DuckDBDatabase (class in linkml_store.api.stores.duckdb) (class in linkml_store.api.stores.duckdb.duckdb_database)

E

encoding (FileSystemCollection attribute), [1] engine (DuckDBDatabase property), [1] exists() (Collection method)

export_data() (Collection method) export_database() (Database method) (DuckDBDatabase method), [1] (MongoDBDatabase method), [1]

F

file (HDF5Database property) file_format (FileSystemCollection attribute), [1] FileSystemCollection (class in linkml_store.api.stores.filesystem) (class in linkml_store.api.stores.filesystem.filesystem_collection) FileSystemDatabase (class in linkml_store.api.stores.filesystem) (class in linkml_store.api.stores.filesystem.filesystem_database)

find() (Collection method) find_iter() (Collection method) from_config() (Client method) (Database method)

G

get() (Collection method) get_collection() (Database method) (SolrDatabase method)

get_database() (Client method) get_index_collection_name() (Collection method) get_one() (Collection method)

H

handle (Client property) (Database property) hdf5_group (HDF5Collection property)

HDF5Collection (class in linkml_store.api.stores.hdf5.hdf5_collection) HDF5Database (class in linkml_store.api.stores.hdf5.hdf5_database) hidden (Collection property)

I

identifier_attribute_name (Collection property) import_data() (Collection method) import_database() (Database method) (DuckDBDatabase method), [1] (MongoDBDatabase method), [1] index_objects() (Collection method) indexers (Collection property) induce_class_definition_from_objects() (Collection method) induce_schema_view() (ChromaDBDatabase method) (Database method) (DuckDBDatabase method), [1] (HDF5Database method) init_collections() (ChromaDBDatabase method) (Database method) (DuckDBDatabase method), [1] (FileSystemDatabase method), [1] (HDF5Database method) (MongoDBDatabase method), [1] (SolrDatabase method)

insert() (ChromaDBCollection method) (Collection method) (DuckDBCollection method), [1] (FileSystemCollection method), [1] (HDF5Collection method) (MongoDBCollection method), [1] is_internal (Collection property) iter_validate_collection() (Collection method) iter_validate_database() (Database method)

L

linkml_store.api.stores module linkml_store.api.stores.chromadb module linkml_store.api.stores.chromadb.chromadb_collection module linkml_store.api.stores.chromadb.chromadb_database module linkml_store.api.stores.duckdb module linkml_store.api.stores.duckdb.duckdb_collection module linkml_store.api.stores.duckdb.duckdb_database module linkml_store.api.stores.duckdb.mappings module linkml_store.api.stores.filesystem module linkml_store.api.stores.filesystem.filesystem_collection module linkml_store.api.stores.filesystem.filesystem_database module linkml_store.api.stores.hdf5 module linkml_store.api.stores.hdf5.hdf5_collection module

linkml_store.api.stores.hdf5.hdf5_database module linkml_store.api.stores.mongodb module linkml_store.api.stores.mongodb.mongodb_collection module linkml_store.api.stores.mongodb.mongodb_database module linkml_store.api.stores.solr module linkml_store.api.stores.solr.solr_collection module linkml_store.api.stores.solr.solr_database module linkml_store.api.stores.solr.solr_utils module List (MongoDBCollection attribute), [1] list_collection_names() (Database method) list_collections() (Database method) list_index_names() (Collection method) listeners (Database attribute) load_from_source() (Collection method) load_metadata() (FileSystemDatabase method), [1] load_schema_view() (Database method)

M

metadata (Client attribute) (Collection attribute) (Database attribute) metadata_path (FileSystemDatabase property), [1] module linkml_store.api.stores linkml_store.api.stores.chromadb linkml_store.api.stores.chromadb.chromadb_collection linkml_store.api.stores.chromadb.chromadb_database linkml_store.api.stores.duckdb linkml_store.api.stores.duckdb.duckdb_collection linkml_store.api.stores.duckdb.duckdb_database linkml_store.api.stores.duckdb.mappings linkml_store.api.stores.filesystem linkml_store.api.stores.filesystem.filesystem_collection linkml_store.api.stores.filesystem.filesystem_database linkml_store.api.stores.hdf5 linkml_store.api.stores.hdf5.hdf5_collection linkml_store.api.stores.hdf5.hdf5_database linkml_store.api.stores.mongodb linkml_store.api.stores.mongodb.mongodb_collection linkml_store.api.stores.mongodb.mongodb_database linkml_store.api.stores.solr linkml_store.api.stores.solr.solr_collection linkml_store.api.stores.solr.solr_database linkml_store.api.stores.solr.solr_utils

mongo_collection (MongoDBCollection property), [1] MongoDBCollection (class in linkml_store.api.stores.mongodb) (class in linkml_store.api.stores.mongodb.mongodb_collection) MongoDBDatabase (class in linkml_store.api.stores.mongodb) (class in linkml_store.api.stores.mongodb.mongodb_database)

N

native_client (MongoDBDatabase property), [1] native_collection (ChromaDBCollection property)

native_db (MongoDBDatabase property), [1] no_backup_on_drop (FileSystemDatabase attribute), [1]

O

object_identifier() (Collection method)

objects_as_list (FileSystemCollection property), [1]

P

parent (Collection attribute) (Database attribute)

path (FileSystemCollection attribute), [1] path_to_file (FileSystemCollection property), [1] peek() (Collection method)

Q

query() (ChromaDBCollection method) (ChromaDBDatabase method) (Collection method) (Database method) (DuckDBDatabase method), [1] (FileSystemCollection method), [1] (HDF5Collection method) (HDF5Database method) (MongoDBCollection method), [1] (MongoDBDatabase method), [1] (SolrCollection method) (SolrDatabase method)

query_facets() (ChromaDBCollection method) (Collection method) (DuckDBCollection method), [1] (FileSystemCollection method), [1] (HDF5Collection method) (MongoDBCollection method), [1] (SolrCollection method)

R

ranked_rows() (Collection method) recreate_if_exists (Database property)

replace() (Collection method) rows() (Collection method) rows_iter() (Collection method)

S

schema_view (Database property) search() (Collection method) (SolrCollection method) set_identifier_attribute_name() (Collection method)

set_schema_view() (Database method) size() (Collection method) SolrCollection (class in linkml_store.api.stores.solr.solr_collection) SolrDatabase (class in linkml_store.api.stores.solr.solr_database) store() (Database method)

T

target_class_name (Collection property)

U

Union (MongoDBCollection attribute), [1]

update() (Collection method) use_cores (SolrDatabase attribute)

X

xxxinduce_schema_view() (FileSystemDatabase method), [1]