Index Symbols | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | Y Symbols --add-ols-annotations gen-owl command line option --add-root-classes gen-owl command line option --array-representations gen-pydantic command line option --assert-equivalent-classes gen-owl command line option --base gen-jsonld-context command line option gen-prefix-map command line option --classes gen-erdiagram command line option gen-markdown command line option --classvars gen-python command line option --closed gen-json-schema command line option gen-shacl command line option --config linkml-validate command line option --config-file gen-project command line option --context linkml-convert command line option --csv-field-size-limit linkml-sqldb command line option --declarative gen-sqla command line option --dialect gen-sqltables command line option --dir gen-markdown command line option gen-project command line option gen-sparql command line option --endpoint-url linkml-sparql-validate command line option --exclude gen-project command line option --exclude-attributes gen-erdiagram command line option --exit-on-first-failure linkml-validate command line option --extra-fields gen-pydantic command line option --flatprefixes gen-jsonld-context command line option --follow-references gen-erdiagram command line option --format gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option --gen-type-utils gen-typescript command line option --generate-classes gen-sqla command line option --generate-records gen-java command line option --generator-arguments gen-project command line option --genmeta gen-python command line option --head gen-python command line option --img gen-markdown command line option --importmap gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option --include gen-project command line option --include-induced-slots gen-typescript command line option --include-mixins gen-excel command line option --include-range-class-descendants gen-json-schema command line option linkml-validate command line option --indent gen-json-schema command line option --index-file gen-markdown command line option --index-slot linkml-convert command line option linkml-validate command line option --infer linkml-convert command line option --inline gen-json-schema command line option --input linkml-sparql-validate command line option --input-format linkml-convert command line option linkml-sparql-validate command line option linkml-validate command line option --legacy-mode linkml-validate command line option --limit linkml-sparql-validate command line option --log_level gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option --map-fields gen-markdown command line option --materialize-attributes gen-linkml command line option --materialize-patterns gen-linkml command line option --max-hops gen-erdiagram command line option --mergeimports gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option --metaclasses gen-owl command line option --metadata gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option --metadata-profile gen-owl command line option --metauris gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option --mixins-as-expressions gen-owl command line option --model gen-jsonld-context command line option --module linkml-convert command line option linkml-validate command line option --named-graph linkml-sparql-validate command line option --no-add-ols-annotations gen-owl command line option --no-add-root-classes gen-owl command line option --no-assert-equivalent-classes gen-owl command line option --no-classvars gen-python command line option --no-declarative gen-sqla command line option --no-exclude-attributes gen-erdiagram command line option --no-flatprefixes gen-jsonld-context command line option --no-follow-references gen-erdiagram command line option --no-generate-classes gen-sqla command line option --no-generate-records gen-java command line option --no-genmeta gen-python command line option --no-head gen-python command line option --no-infer linkml-convert command line option --no-materialize-attributes gen-linkml command line option --no-materialize-patterns gen-linkml command line option --no-mergeimports gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option --no-metaclasses gen-owl command line option --no-metadata gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option --no-mixins-as-expressions gen-owl command line option --no-model gen-jsonld-context command line option --no-prefixes gen-jsonld-context command line option --no-pydantic gen-sqla command line option --no-range-class-descendants gen-json-schema command line option linkml-validate command line option --no-slots gen-python command line option --no-stacktrace gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option --no-structural gen-erdiagram command line option --no-target-class-from-path linkml-convert command line option --no-type-objects gen-owl command line option --no-use-foreign-keys gen-sqla command line option gen-sqltables command line option --no-use-native-uris gen-owl command line option --no-validate gen-python command line option linkml-convert command line option --noimages gen-markdown command line option --non-closed gen-shacl command line option --not-closed gen-json-schema command line option --notypesdir gen-markdown command line option --noyuml gen-markdown command line option --ontology-uri-suffix gen-owl command line option --output gen-excel command line option gen-linkml command line option gen-owl command line option gen-prefix-map command line option gen-shex command line option gen-sssom command line option linkml-convert command line option linkml-sparql-validate command line option --output-directory gen-java command line option --output-format linkml-convert command line option linkml-sparql-validate command line option --package gen-java command line option --prefix linkml-convert command line option --prefixes gen-jsonld-context command line option --pydantic gen-sqla command line option --pydantic-version gen-pydantic command line option --python-import gen-sqltables command line option --quiet linkml-sqldb command line option --relmodel-output gen-sqltables command line option --schema linkml-convert command line option linkml-sparql-validate command line option linkml-validate command line option --slots gen-python command line option --split-workbook-by-class gen-excel command line option --sqla-file gen-sqltables command line option --stacktrace gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option --structural gen-erdiagram command line option --suffix gen-shacl command line option --target-class linkml-convert command line option linkml-validate command line option --target-class-from-path linkml-convert command line option --template-dir gen-pydantic command line option --template-file gen-java command line option --title-from gen-json-schema command line option --top-class gen-json-schema command line option --type-objects gen-owl command line option --use-foreign-keys gen-sqla command line option gen-sqltables command line option --use-native-uris gen-owl command line option --useuris gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option --validate gen-python command line option linkml-convert command line option --verbose gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-sqldb command line option --version gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-convert command line option linkml-sparql-validate command line option linkml-sqldb command line option linkml-validate command line option --warnonexist gen-markdown command line option -A gen-project command line option -C gen-project command line option linkml-convert command line option linkml-validate command line option -c gen-erdiagram command line option gen-markdown command line option linkml-convert command line option -d gen-markdown command line option gen-project command line option gen-sparql command line option -f gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-convert command line option linkml-sparql-validate command line option linkml-validate command line option -G linkml-sparql-validate command line option -I gen-markdown command line option gen-project command line option -i gen-json-schema command line option gen-markdown command line option linkml-sparql-validate command line option -im gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option -L linkml-sparql-validate command line option -M gen-markdown command line option -m linkml-convert command line option linkml-validate command line option -o gen-excel command line option gen-linkml command line option gen-owl command line option gen-prefix-map command line option gen-shex command line option gen-sssom command line option linkml-convert command line option linkml-sparql-validate command line option -P linkml-convert command line option -q linkml-sqldb command line option -S linkml-convert command line option linkml-validate command line option -s gen-shacl command line option linkml-convert command line option linkml-sparql-validate command line option linkml-validate command line option -t gen-json-schema command line option linkml-convert command line option linkml-sparql-validate command line option -U linkml-sparql-validate command line option -u gen-typescript command line option -V gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-convert command line option linkml-sparql-validate command line option linkml-sqldb command line option linkml-validate command line option -v gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-sqldb command line option -X gen-project command line option A abstracts (linkml.utils.schemasynopsis.SchemaSynopsis attribute) add_class() (linkml.utils.schema_builder.SchemaBuilder method) (linkml_runtime.utils.schemaview.SchemaView method) add_defaults() (linkml.utils.schema_builder.SchemaBuilder method) add_enum() (linkml.utils.schema_builder.SchemaBuilder method) (linkml_runtime.utils.schemaview.SchemaView method) add_id_prefixes() (linkml.utils.generator.Generator method) add_mappings() (linkml.utils.generator.Generator method) add_prefix() (linkml.utils.generator.Generator method) (linkml.utils.schema_builder.SchemaBuilder method) add_ref() (linkml.utils.schemasynopsis.SchemaSynopsis method) add_slot() (linkml.utils.schema_builder.SchemaBuilder method) (linkml_runtime.utils.schemaview.SchemaView method) add_subset() (linkml_runtime.utils.schemaview.SchemaView method) add_type() (linkml.utils.schema_builder.SchemaBuilder method) (linkml_runtime.utils.schemaview.SchemaView method) addref() (linkml.utils.typereferences.References method) adjust_slot() (linkml.generators.jsonldgen.JSONLDGenerator method) alias (built-in variable) (linkml.generators.pydanticgen.template.Import attribute) (linkml.generators.pydanticgen.template.ObjectImport attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) alias_root() (in module linkml.utils.mergeutils) aliased_slot_name() (linkml.utils.generator.Generator method) aliases (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) all_aliases() (linkml_runtime.utils.schemaview.SchemaView method) all_class() (linkml_runtime.utils.schemaview.SchemaView method) all_class_objects() (linkml.generators.docgen.DocGenerator method) all_classes() (linkml_runtime.utils.schemaview.SchemaView method) all_element() (linkml_runtime.utils.schemaview.SchemaView method) all_elements() (linkml_runtime.utils.schemaview.SchemaView method) all_enum() (linkml_runtime.utils.schemaview.SchemaView method) all_enum_objects() (linkml.generators.docgen.DocGenerator method) all_enums() (linkml_runtime.utils.schemaview.SchemaView method) all_members (linkml_runtime.linkml_model.meta.SlotDefinition attribute) all_of (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) all_schema() (linkml_runtime.utils.schemaview.SchemaView method) all_slot() (linkml_runtime.utils.schemaview.SchemaView method) all_slot_objects() (linkml.generators.docgen.DocGenerator method) all_slots() (linkml.utils.generator.Generator method) (linkml_runtime.utils.schemaview.SchemaView method) all_subset() (linkml_runtime.utils.schemaview.SchemaView method) all_subset_objects() (linkml.generators.docgen.DocGenerator method) all_subsets() (linkml_runtime.utils.schemaview.SchemaView method) all_type() (linkml_runtime.utils.schemaview.SchemaView method) all_type_object_names() (linkml.generators.docgen.DocGenerator method) all_type_objects() (linkml.generators.docgen.DocGenerator method) all_types() (linkml_runtime.utils.schemaview.SchemaView method) alt_descriptions (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) alternative (linkml.generators.pydanticgen.template.ConditionalImport attribute) ancestors() (linkml.utils.generator.Generator method) annotation_dict() (linkml_runtime.utils.schemaview.SchemaView method) annotations (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.utils.execute_tutorial.Block attribute) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) any_of (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) any_shape() (linkml.generators.pydanticgen.array.ArrayRangeGenerator method) (linkml.generators.pydanticgen.array.ListOfListsArray method) AnyShapeArrayType (class in linkml.generators.pydanticgen.array) apply_to (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) applytorefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) applytos (linkml.utils.schemasynopsis.SchemaSynopsis attribute) array (linkml.generators.pydanticgen.array.ArrayRangeGenerator attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) ArrayExpression (class in linkml_runtime.linkml_model.meta) ArrayRangeGenerator (class in linkml.generators.pydanticgen.array) ArrayRepresentation (class in linkml.generators.pydanticgen.array) Arrays as_dict() (linkml.utils.schema_builder.SchemaBuilder method) associations_generated (linkml.generators.yumlgen.YumlGenerator attribute) asymmetric (linkml_runtime.linkml_model.meta.SlotDefinition attribute) attributes (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) B base (linkml_runtime.linkml_model.meta.TypeDefinition attribute) base_dir (linkml.utils.generator.Generator attribute) base_model (linkml.generators.pydanticgen.template.PydanticModule attribute) bases (linkml.generators.pydanticgen.template.PydanticClass attribute) black (linkml.generators.pydanticgen.PydanticGenerator attribute) Block (class in linkml.utils.execute_tutorial) bounded_dimensions() (linkml.generators.pydanticgen.array.ArrayRangeGenerator method) (linkml.generators.pydanticgen.array.ListOfListsArray method) box_generated (linkml.generators.yumlgen.YumlGenerator attribute) broad_mappings (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) bullet() (linkml.generators.docgen.DocGenerator static method) C cardinality() (linkml.generators.docgen.DocGenerator static method) (linkml.generators.yumlgen.YumlGenerator static method) categories (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) category (linkml.utils.execute_tutorial.Block attribute) check_prefix() (linkml.utils.schemaloader.SchemaLoader method) check_prefixes() (linkml.utils.schemaloader.SchemaLoader method) children_are_mutually_disjoint (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) class_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) class_associations() (linkml.generators.yumlgen.YumlGenerator method) class_box() (linkml.generators.yumlgen.YumlGenerator method) class_children() (linkml_runtime.utils.schemaview.SchemaView method) class_class_curie (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.EnumDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) class_class_uri (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.EnumDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) class_descendants() (linkml_runtime.utils.schemaview.SchemaView method) class_hierarchy_as_tuples() (linkml.generators.docgen.DocGenerator method) class_identifier() (linkml.utils.generator.Generator method) class_identifier_path() (linkml.utils.generator.Generator method) class_induced_slots() (linkml.generators.docgen.DocGenerator method) (linkml_runtime.utils.schemaview.SchemaView method) class_leaves() (linkml_runtime.utils.schemaview.SchemaView method) class_model_uri (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.EnumDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) class_name (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.EnumDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) class_name_mappings() (linkml_runtime.utils.schemaview.SchemaView method) class_names (linkml.generators.pydanticgen.template.PydanticModule property) class_or_type_for() (linkml.utils.generator.Generator method) class_or_type_name() (linkml.utils.generator.Generator method) class_parents() (linkml_runtime.utils.schemaview.SchemaView method) class_roots() (linkml_runtime.utils.schemaview.SchemaView method) class_slots() (linkml_runtime.utils.schemaview.SchemaView method) class_uri (linkml_runtime.linkml_model.meta.ClassDefinition attribute) ClassDefinition (class in linkml_runtime.linkml_model.meta) classes (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) classification_rules (linkml_runtime.linkml_model.meta.ClassDefinition attribute) classrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) close_mappings (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) closure (linkml.generators.csvgen.CsvGenerator attribute) code_set (linkml_runtime.linkml_model.meta.EnumDefinition attribute) code_set_tag (linkml_runtime.linkml_model.meta.EnumDefinition attribute) code_set_version (linkml_runtime.linkml_model.meta.EnumDefinition attribute) codesets (linkml.utils.schemasynopsis.SchemaSynopsis attribute) comments (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) compile() (linkml.utils.sqlutils.SQLStore method) compile_module() (linkml.generators.pydanticgen.PydanticGenerator method) compile_native() (linkml.utils.sqlutils.SQLStore method) complex_dimensions() (linkml.generators.pydanticgen.array.ArrayRangeGenerator method) (linkml.generators.pydanticgen.array.ListOfListsArray method) concepts (linkml_runtime.linkml_model.meta.EnumDefinition attribute) condition (linkml.generators.pydanticgen.template.ConditionalImport attribute) ConditionalImport (class in linkml.generators.pydanticgen.template) Config (class in linkml_runtime.utils.inference_utils) content (linkml.utils.execute_tutorial.Block attribute) context (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) ContextGenerator (class in linkml.generators.jsonldcontextgen) contributors (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) convert_to_snake_case() (in module linkml.utils.helpers) created_by (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) created_on (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) CSVDumper (class in linkml_runtime.dumpers) CsvGenerator (class in linkml.generators.csvgen) CsvLoader (class in linkml.validator.loaders) CSVLoader (class in linkml_runtime.loaders) curie_for() (in module linkml.utils.ifabsent_functions) customize_environment() (in module linkml.generators.docgen) D DATA_SOURCES linkml-validate command line option DataValidator (class in linkml.utils.datavalidator) db_exists() (linkml.utils.sqlutils.SQLStore method) default_curi_maps (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) default_curie_or_uri() (in module linkml.utils.ifabsent_functions) default_name (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) default_ns_for() (in module linkml.utils.ifabsent_functions) default_prefix (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) default_prefix() (linkml.utils.generator.Generator method) default_range (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) default_uri_for() (in module linkml.utils.ifabsent_functions) defining_slots (linkml_runtime.linkml_model.meta.ClassDefinition attribute) definingslots (linkml.utils.schemasynopsis.SchemaSynopsis attribute) delete_class() (linkml_runtime.utils.schemaview.SchemaView method) delete_enum() (linkml_runtime.utils.schemaview.SchemaView method) delete_slot() (linkml_runtime.utils.schemaview.SchemaView method) delete_subset() (linkml_runtime.utils.schemaview.SchemaView method) delete_type() (linkml_runtime.utils.schemaview.SchemaView method) deprecated (linkml.utils.deprecation.Deprecation property) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) deprecated_element_has_exact_replacement (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) deprecated_element_has_possible_replacement (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) deprecated_in (linkml.utils.deprecation.Deprecation attribute) Deprecation Guide Log Deprecation (class in linkml.utils.deprecation) deprecation_warning() (in module linkml.utils) (in module linkml.utils.deprecation) description (linkml.generators.pydanticgen.template.EnumValue attribute) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml.generators.pydanticgen.template.PydanticEnum attribute) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) designates_type (linkml_runtime.linkml_model.meta.SlotDefinition attribute) dev (linkml.utils.deprecation.SemVer attribute) dev_l (linkml.utils.deprecation.SemVer attribute) dev_n (linkml.utils.deprecation.SemVer attribute) diagram_name (linkml.generators.yumlgen.YumlGenerator attribute) diagram_type (linkml.generators.docgen.DocGenerator attribute) DiagramType (class in linkml.generators.docgen) DIALECT (in module linkml.generators.docgen) dialect (linkml.generators.docgen.DocGenerator attribute) DimensionExpression (class in linkml_runtime.linkml_model.meta) dimensions (built-in variable) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) directory (linkml.generators.docgen.DocGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) directory_output (linkml.utils.generator.Generator attribute) disjoint_with (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) DocGenerator (class in linkml.generators.docgen) domain (linkml_runtime.linkml_model.meta.SlotDefinition attribute) domain_of (linkml_runtime.linkml_model.meta.SlotDefinition attribute) domain_slots() (linkml.utils.generator.Generator method) dtype (linkml.generators.pydanticgen.array.ArrayRangeGenerator attribute) dump() (linkml.utils.sqlutils.SQLStore method) (linkml_runtime.dumpers.CSVDumper method) (linkml_runtime.dumpers.RDFLibDumper method) (linkml_runtime.dumpers.YAMLDumper method) dumps() (linkml_runtime.dumpers.CSVDumper method) (linkml_runtime.dumpers.RDFLibDumper method) (linkml_runtime.dumpers.YAMLDumper method) E emit_metadata (linkml.generators.rdfgen.RDFGenerator attribute) emit_prefixes (linkml.utils.generator.Generator attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) empty_references() (in module linkml.utils.schemasynopsis) end_class() (linkml.utils.generator.Generator method) end_schema() (linkml.generators.csvgen.CsvGenerator method) (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.generators.rdfgen.RDFGenerator method) (linkml.utils.generator.Generator method) enshorten() (in module linkml.generators.docgen) enum_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) enum_identifier_path() (linkml.utils.generator.Generator static method) enum_parents() (linkml_runtime.utils.schemaview.SchemaView method) enum_range (linkml_runtime.linkml_model.meta.SlotDefinition attribute) enum_uri (linkml_runtime.linkml_model.meta.EnumDefinition attribute) EnumDefinition (class in linkml_runtime.linkml_model.meta) enumrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) enums (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) EnumValue (class in linkml.generators.pydanticgen.template) environment() (linkml.generators.pydanticgen.template.TemplateModel class method) epoch (linkml.utils.deprecation.SemVer attribute) equals_expression (linkml_runtime.linkml_model.meta.SlotDefinition attribute) equals_number (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) equals_string (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) equals_string_in (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) er_diagram (linkml.generators.docgen.DiagramType attribute) ERDiagramGenerator (class in linkml.generators.erdiagramgen) error (linkml.utils.execute_tutorial.Block attribute) errors() (linkml.utils.schemasynopsis.SchemaSynopsis method) exact_cardinality (built-in variable) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) exact_mappings (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) exact_number_dimensions (built-in variable) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) exactly_one_of (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) example_directory (linkml.generators.docgen.DocGenerator attribute) example_object_blobs() (linkml.generators.docgen.DocGenerator method) example_runner (linkml.generators.docgen.DocGenerator attribute) examples (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) execute_blocks() (in module linkml.utils.execute_tutorial) expand_curie() (linkml_runtime.utils.schemaview.SchemaView method) expected_fail (linkml.utils.execute_tutorial.Block attribute) extensions (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) extra_fields (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) F field (linkml.generators.pydanticgen.template.PydanticAttribute property) fields (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) file_extension (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.utils.generator.Generator attribute) filtered_cls_slots() (linkml.generators.yumlgen.YumlGenerator method) focus_classes (linkml.generators.yumlgen.YumlGenerator attribute) format (linkml.utils.generator.Generator attribute) formatted_element_name() (linkml.utils.generator.Generator method) from_package() (linkml.utils.deprecation.SemVer class method) from_schema (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) from_sqla() (linkml.utils.sqlutils.SQLStore method) from_str() (linkml.utils.deprecation.SemVer class method) G gen-erdiagram command line option --classes --exclude-attributes --follow-references --format --importmap --log_level --max-hops --mergeimports --metadata --metauris --no-exclude-attributes --no-follow-references --no-mergeimports --no-metadata --no-stacktrace --no-structural --stacktrace --structural --useuris --verbose --version -c -f -im -V -v YAMLFILE gen-excel command line option --format --importmap --include-mixins --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --split-workbook-by-class --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE gen-graphql command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE gen-java command line option --format --generate-records --importmap --log_level --mergeimports --metadata --metauris --no-generate-records --no-mergeimports --no-metadata --no-stacktrace --output-directory --package --stacktrace --template-file --useuris --verbose --version -f -im -V -v YAMLFILE gen-json-schema command line option --closed --format --importmap --include-range-class-descendants --indent --inline --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-range-class-descendants --no-stacktrace --not-closed --stacktrace --title-from --top-class --useuris --verbose --version -f -i -im -t -V -v YAMLFILE gen-jsonld-context command line option --base --flatprefixes --format --importmap --log_level --mergeimports --metadata --metauris --model --no-flatprefixes --no-mergeimports --no-metadata --no-model --no-prefixes --no-stacktrace --prefixes --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE gen-linkml command line option --format --importmap --log_level --materialize-attributes --materialize-patterns --mergeimports --metadata --metauris --no-materialize-attributes --no-materialize-patterns --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE gen-markdown command line option --classes --dir --format --img --importmap --index-file --log_level --map-fields --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --noimages --notypesdir --noyuml --stacktrace --useuris --verbose --version --warnonexist -c -d -f -i -I -im -M -V -v YAMLFILE gen-owl command line option --add-ols-annotations --add-root-classes --assert-equivalent-classes --format --importmap --log_level --mergeimports --metaclasses --metadata --metadata-profile --metauris --mixins-as-expressions --no-add-ols-annotations --no-add-root-classes --no-assert-equivalent-classes --no-mergeimports --no-metaclasses --no-metadata --no-mixins-as-expressions --no-stacktrace --no-type-objects --no-use-native-uris --ontology-uri-suffix --output --stacktrace --type-objects --use-native-uris --useuris --verbose --version -f -im -o -V -v YAMLFILE gen-prefix-map command line option --base --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE gen-project command line option --config-file --dir --exclude --generator-arguments --include --log_level --mergeimports --no-mergeimports --version -A -C -d -I -V -X YAMLFILE gen-proto command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE gen-pydantic command line option --array-representations --extra-fields --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --pydantic-version --stacktrace --template-dir --useuris --verbose --version -f -im -V -v YAMLFILE gen-python command line option --classvars --format --genmeta --head --importmap --log_level --mergeimports --metadata --metauris --no-classvars --no-genmeta --no-head --no-mergeimports --no-metadata --no-slots --no-stacktrace --no-validate --slots --stacktrace --useuris --validate --verbose --version -f -im -V -v YAMLFILE gen-shacl command line option --closed --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --non-closed --stacktrace --suffix --useuris --verbose --version -f -im -s -V -v YAMLFILE gen-shex command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE gen-sparql command line option --dir --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -d -f -im -V -v YAMLFILE gen-sqla command line option --declarative --format --generate-classes --importmap --log_level --mergeimports --metadata --metauris --no-declarative --no-generate-classes --no-mergeimports --no-metadata --no-pydantic --no-stacktrace --no-use-foreign-keys --pydantic --stacktrace --use-foreign-keys --useuris --verbose --version -f -im -V -v YAMLFILE gen-sqltables command line option --dialect --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --no-use-foreign-keys --python-import --relmodel-output --sqla-file --stacktrace --use-foreign-keys --useuris --verbose --version -f -im -V -v YAMLFILE gen-sssom command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE gen-terminusdb command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE gen-typescript command line option --format --gen-type-utils --importmap --include-induced-slots --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -u -V -v YAMLFILE gen_classes (linkml.generators.yumlgen.YumlGenerator attribute) gen_classvars (linkml.generators.docgen.DocGenerator attribute) gen_slots (linkml.generators.docgen.DocGenerator attribute) generate_collection_key() (linkml.generators.pydanticgen.PydanticGenerator method) generate_header() (linkml.generators.csvgen.CsvGenerator method) generate_python_range() (linkml.generators.pydanticgen.PydanticGenerator method) generated (linkml.generators.yumlgen.YumlGenerator attribute) generation_date (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) Generator (class in linkml.utils.generator) generatorname (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.docgen.DocGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.linkmlgen.LinkmlGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) generatorversion (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.docgen.DocGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.linkmlgen.LinkmlGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) genmeta (linkml.generators.docgen.DocGenerator attribute) get_array_representations_range() (linkml.generators.pydanticgen.PydanticGenerator method) get_children() (linkml_runtime.utils.schemaview.SchemaView method) get_class() (linkml_runtime.utils.schemaview.SchemaView method) get_class_isa_plus_mixins() (linkml.generators.pydanticgen.PydanticGenerator method) get_classes_by_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_classes_modifying_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_direct_slot_names() (linkml.generators.docgen.DocGenerator static method) get_direct_slots() (linkml.generators.docgen.DocGenerator method) get_dumper() (in module linkml.utils.datautils) get_element() (linkml_runtime.utils.schemaview.SchemaView method) get_elements_applicable_by_identifier() (linkml_runtime.utils.schemaview.SchemaView method) get_elements_applicable_by_prefix() (linkml_runtime.utils.schemaview.SchemaView method) get_enum() (linkml_runtime.utils.schemaview.SchemaView method) get_generator() (linkml.generators.pydanticgen.array.ArrayRangeGenerator class method) get_identifier_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_indirect_slots() (linkml.generators.docgen.DocGenerator method) get_key_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_loader() (in module linkml.utils.datautils) get_mapping_index() (linkml_runtime.utils.schemaview.SchemaView method) get_mappings() (linkml_runtime.utils.schemaview.SchemaView method) get_metamodel_slot_name() (linkml.utils.generator.Generator method) get_mixin_inherited_slots() (linkml.generators.docgen.DocGenerator method) get_predefined_slot_values() (linkml.generators.pydanticgen.PydanticGenerator method) get_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_slot_inherited_from() (linkml.generators.docgen.DocGenerator method) get_slots_by_enum() (linkml_runtime.utils.schemaview.SchemaView method) get_subset() (linkml_runtime.utils.schemaview.SchemaView method) get_type() (linkml_runtime.utils.schemaview.SchemaView method) get_type_designator_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_uri() (linkml_runtime.utils.schemaview.SchemaView method) GraphqlGenerator (class in linkml.generators.graphqlgen) H has_bounded_dimensions (linkml.generators.pydanticgen.array.ArrayRangeGenerator property) has_extra_dimensions (linkml_runtime.linkml_model.meta.ArrayExpression attribute) has_member (linkml_runtime.linkml_model.meta.SlotDefinition attribute) hierarchical_class_view (linkml.generators.docgen.DocGenerator attribute) I id (linkml.utils.schema_builder.SchemaBuilder attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) identifier (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) ifabsent (linkml_runtime.linkml_model.meta.SlotDefinition attribute) ifabsent_postinit_declaration() (in module linkml.utils.ifabsent_functions) ifabsent_value_declaration() (in module linkml.utils.ifabsent_functions) implicit_prefix (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) Import (class in linkml.generators.pydanticgen.template) imported_from (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) importmap (linkml.utils.generator.Generator attribute) (linkml_runtime.utils.schemaview.SchemaView attribute) Imports (class in linkml.generators.pydanticgen.template) imports (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.pydanticgen.template.Imports attribute) (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) imports_closure() (linkml_runtime.utils.schemaview.SchemaView method) in_language (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) in_schema() (linkml_runtime.utils.schemaview.SchemaView method) in_subset (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) include (linkml_runtime.linkml_model.meta.EnumDefinition attribute) include_top_level_diagram (linkml.generators.docgen.DocGenerator attribute) index_name (linkml.generators.docgen.DocGenerator attribute) induced_class() (linkml_runtime.utils.schemaview.SchemaView method) induced_enum() (linkml_runtime.utils.schemaview.SchemaView method) induced_slot() (linkml_runtime.utils.schemaview.SchemaView method) induced_type() (linkml_runtime.utils.schemaview.SchemaView method) infer_all_slot_values() (in module linkml_runtime.utils.inference_utils) infer_index_slot() (in module linkml.utils.datautils) infer_root_class() (in module linkml.utils.datautils) infer_slot_value() (in module linkml_runtime.utils.inference_utils) inheritance_tree() (linkml.generators.docgen.DocGenerator method) inherited (linkml_runtime.linkml_model.meta.SlotDefinition attribute) inherits (linkml_runtime.linkml_model.meta.EnumDefinition attribute) inject_slot_info() (linkml.generators.docgen.DocGenerator method) injected_classes (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.pydanticgen.template.PydanticModule attribute) injected_fields (linkml.generators.pydanticgen.PydanticGenerator attribute) inlined (linkml_runtime.linkml_model.meta.SlotDefinition attribute) inlined_as_list (linkml_runtime.linkml_model.meta.SlotDefinition attribute) INPUT linkml-convert command line option inschema (linkml.utils.schemasynopsis.SchemaSynopsis attribute) inverse (linkml_runtime.linkml_model.meta.SlotDefinition attribute) inverse() (linkml_runtime.utils.schemaview.SchemaView method) inverses (linkml.utils.schemasynopsis.SchemaSynopsis attribute) irreflexive (linkml_runtime.linkml_model.meta.SlotDefinition attribute) is_a (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) is_bash() (linkml.utils.execute_tutorial.Block method) is_class_field (linkml_runtime.linkml_model.meta.SlotDefinition attribute) is_class_unconstrained() (linkml.utils.generator.Generator static method) is_file_block() (linkml.utils.execute_tutorial.Block method) is_grouping_slot (linkml_runtime.linkml_model.meta.SlotDefinition attribute) is_inlined() (linkml_runtime.utils.schemaview.SchemaView method) is_mixin() (linkml_runtime.utils.schemaview.SchemaView method) is_multivalued() (linkml_runtime.utils.schemaview.SchemaView method) is_relationship() (linkml_runtime.utils.schemaview.SchemaView method) is_slot_percent_encoded() (linkml_runtime.utils.schemaview.SchemaView method) is_stdout() (linkml.utils.execute_tutorial.Block method) is_usage_slot (linkml_runtime.linkml_model.meta.SlotDefinition attribute) isabsent_match() (in module linkml.utils.ifabsent_functions) isarefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) issue (linkml.utils.deprecation.Deprecation attribute) iter_results() (linkml.validator.Validator method) iter_results_from_source() (linkml.validator.Validator method) J JavaGenerator (class in linkml.generators.javagen) JSONDumper (class in linkml_runtime.dumpers) JSONLDGenerator (class in linkml.generators.jsonldgen) JsonLoader (class in linkml.validator.loaders) JSONLoader (class in linkml_runtime.loaders) JsonSchemaGenerator (class in linkml.generators.jsonschemagen) JsonschemaValidationPlugin (class in linkml.validator.plugins) K key (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) keywords (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) L label (linkml.generators.pydanticgen.template.EnumValue attribute) last_updated_on (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) latex() (linkml.generators.docgen.DocGenerator static method) license (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) link() (linkml.generators.docgen.DocGenerator method) linkml-convert command line option --context --index-slot --infer --input-format --module --no-infer --no-target-class-from-path --no-validate --output --output-format --prefix --schema --target-class --target-class-from-path --validate --version -C -c -f -m -o -P -S -s -t -V INPUT linkml-sparql-validate command line option --endpoint-url --input --input-format --limit --named-graph --output --output-format --schema --version -f -G -i -L -o -s -t -U -V linkml-sqldb command line option --csv-field-size-limit --quiet --verbose --version -q -v -V linkml-validate command line option --config --exit-on-first-failure --include-range-class-descendants --index-slot --input-format --legacy-mode --module --no-range-class-descendants --schema --target-class --version -C -f -m -s -S -V DATA_SOURCES linkml.generators.csvgen module linkml.generators.docgen module linkml.generators.jsonldgen module linkml.generators.pydanticgen.array module linkml.generators.pydanticgen.template module linkml.generators.rdfgen module linkml.generators.yumlgen module linkml.utils module linkml.utils.converter module linkml.utils.datautils module linkml.utils.datavalidator module linkml.utils.deprecation module linkml.utils.execute_tutorial module linkml.utils.generator module linkml.utils.helpers module linkml.utils.ifabsent_functions module linkml.utils.mergeutils module linkml.utils.rawloader module linkml.utils.schemaloader module linkml.utils.schemasynopsis module linkml.utils.typereferences module linkml.utils.validation module linkml.validator module linkml.validator.loaders module linkml.validator.plugins module LinkmlGenerator (class in linkml.generators.linkmlgen) links() (linkml.generators.docgen.DocGenerator method) list_elements_ordered (linkml_runtime.linkml_model.meta.SlotDefinition attribute) list_elements_unique (linkml_runtime.linkml_model.meta.SlotDefinition attribute) ListOfListsArray (class in linkml.generators.pydanticgen.array) load() (linkml.utils.sqlutils.SQLStore method) (linkml_runtime.loaders.CSVLoader method) (linkml_runtime.loaders.JSONLoader method) (linkml_runtime.loaders.RDFLibLoader method) (linkml_runtime.loaders.YAMLLoader method) load_any() (linkml_runtime.loaders.CSVLoader method) (linkml_runtime.loaders.JSONLoader method) (linkml_runtime.loaders.RDFLibLoader method) (linkml_runtime.loaders.YAMLLoader method) load_image (linkml.generators.yumlgen.YumlGenerator attribute) load_import() (linkml_runtime.utils.schemaview.SchemaView method) load_raw_schema() (in module linkml.utils.rawloader) Loader (class in linkml.validator.loaders) loads() (linkml_runtime.loaders.CSVLoader method) (linkml_runtime.loaders.JSONLoader method) (linkml_runtime.loaders.RDFLibLoader method) (linkml_runtime.loaders.YAMLLoader method) loads_any() (linkml_runtime.loaders.CSVLoader method) (linkml_runtime.loaders.JSONLoader method) (linkml_runtime.loaders.RDFLibLoader method) (linkml_runtime.loaders.YAMLLoader method) local (linkml.utils.deprecation.SemVer attribute) locally_reflexive (linkml_runtime.linkml_model.meta.SlotDefinition attribute) log_level (linkml.utils.generator.Generator attribute) logger (linkml.utils.generator.Generator attribute) logger_warning() (linkml.utils.schemaloader.SchemaLoader method) M major (linkml.utils.deprecation.SemVer attribute) make() (linkml.generators.pydanticgen.array.ArrayRangeGenerator method) mappings (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) MarkdownDialect (class in linkml.generators.docgen) MarkdownGenerator (class in linkml.generators.markdowngen) matches (linkml_runtime.linkml_model.meta.EnumDefinition attribute) materialize_attributes (linkml.generators.linkmlgen.LinkmlGenerator attribute) materialize_classes() (linkml.generators.linkmlgen.LinkmlGenerator method) materialize_derived_schema() (linkml_runtime.utils.schemaview.SchemaView method) materialize_patterns (linkml.generators.linkmlgen.LinkmlGenerator attribute) materialize_patterns() (linkml_runtime.utils.schemaview.SchemaView method) maximum_cardinality (built-in variable) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) maximum_number_dimensions (built-in variable) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) maximum_value (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) merge() (linkml.generators.pydanticgen.template.Import method) merge_class() (linkml.utils.schemaloader.SchemaLoader method) merge_classes() (in module linkml.utils.mergeutils) merge_dicts() (in module linkml.utils.mergeutils) merge_enum() (linkml.utils.schemaloader.SchemaLoader method) merge_enums() (in module linkml.utils.mergeutils) merge_imports() (linkml_runtime.utils.schemaview.SchemaView method) merge_namespaces() (in module linkml.utils.mergeutils) merge_schema() (linkml_runtime.utils.schemaview.SchemaView method) merge_schemas() (in module linkml.utils.mergeutils) merge_slot() (linkml.utils.schemaloader.SchemaLoader method) merge_slots() (in module linkml.utils.mergeutils) merge_type() (linkml.utils.schemaloader.SchemaLoader method) mergeimports (linkml.utils.generator.Generator attribute) mermaid_class_diagram (linkml.generators.docgen.DiagramType attribute) mermaid_diagram() (linkml.generators.docgen.DocGenerator method) mermaid_directive() (linkml.generators.docgen.DocGenerator method) message (linkml.utils.deprecation.Deprecation attribute) metadata (linkml.utils.generator.Generator attribute) metamodel (linkml.utils.generator.Generator attribute) metamodel_name_map (linkml.utils.generator.Generator attribute) metamodel_version (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) minimum_cardinality (built-in variable) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) minimum_number_dimensions (built-in variable) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) minimum_value (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) minor (linkml.utils.deprecation.SemVer attribute) minus (linkml_runtime.linkml_model.meta.EnumDefinition attribute) mixinrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) mixins (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) model_computed_fields (linkml.generators.pydanticgen.template.ConditionalImport attribute) (linkml.generators.pydanticgen.template.EnumValue attribute) (linkml.generators.pydanticgen.template.Import attribute) (linkml.generators.pydanticgen.template.Imports attribute) (linkml.generators.pydanticgen.template.ObjectImport attribute) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml.generators.pydanticgen.template.PydanticEnum attribute) (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml.generators.pydanticgen.template.PydanticValidator attribute) (linkml.generators.pydanticgen.template.TemplateModel attribute) model_config (linkml.generators.pydanticgen.template.ConditionalImport attribute) (linkml.generators.pydanticgen.template.EnumValue attribute) (linkml.generators.pydanticgen.template.Import attribute) (linkml.generators.pydanticgen.template.Imports attribute) (linkml.generators.pydanticgen.template.ObjectImport attribute) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml.generators.pydanticgen.template.PydanticEnum attribute) (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml.generators.pydanticgen.template.PydanticValidator attribute) (linkml.generators.pydanticgen.template.TemplateModel attribute) model_fields (linkml.generators.pydanticgen.template.ConditionalImport attribute) (linkml.generators.pydanticgen.template.EnumValue attribute) (linkml.generators.pydanticgen.template.Import attribute) (linkml.generators.pydanticgen.template.Imports attribute) (linkml.generators.pydanticgen.template.ObjectImport attribute) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml.generators.pydanticgen.template.PydanticEnum attribute) (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml.generators.pydanticgen.template.PydanticValidator attribute) (linkml.generators.pydanticgen.template.TemplateModel attribute) modified_by (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) module linkml.generators.csvgen linkml.generators.docgen linkml.generators.jsonldgen linkml.generators.pydanticgen.array linkml.generators.pydanticgen.template linkml.generators.rdfgen linkml.generators.yumlgen linkml.utils linkml.utils.converter linkml.utils.datautils linkml.utils.datavalidator linkml.utils.deprecation linkml.utils.execute_tutorial linkml.utils.generator linkml.utils.helpers linkml.utils.ifabsent_functions linkml.utils.mergeutils linkml.utils.rawloader linkml.utils.schemaloader linkml.utils.schemasynopsis linkml.utils.typereferences linkml.utils.validation linkml.validator linkml.validator.loaders linkml.validator.plugins module (linkml.generators.pydanticgen.template.Import attribute) mrf() (in module linkml.utils.rawloader) multivalued (linkml_runtime.linkml_model.meta.SlotDefinition attribute) myst (linkml.generators.docgen.MarkdownDialect attribute) N name (linkml.generators.pydanticgen.template.ObjectImport attribute) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml.generators.pydanticgen.template.PydanticEnum attribute) (linkml.utils.deprecation.Deprecation attribute) (linkml.utils.schema_builder.SchemaBuilder attribute) (linkml.utils.typereferences.RefType attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.EnumDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) name() (linkml.generators.docgen.DocGenerator method) namespaces (linkml.utils.generator.Generator attribute) narrow_mappings (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) neighborhood() (linkml.utils.generator.Generator method) no_types_dir (linkml.generators.docgen.DocGenerator attribute) none_of (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) notes (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) NPTypingArray (class in linkml.generators.pydanticgen.array) number_value_range() (linkml.generators.docgen.DocGenerator static method) O obj_for() (linkml.utils.generator.Generator method) ObjectImport (class in linkml.generators.pydanticgen.template) objects (linkml.generators.pydanticgen.template.Import attribute) ordered() (linkml_runtime.utils.schemaview.SchemaView method) original_schema (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) output (linkml.utils.execute_tutorial.Block attribute) (linkml.utils.generator.Generator attribute) output_file_name (linkml.generators.yumlgen.YumlGenerator attribute) OwlSchemaGenerator (class in linkml.generators.owlgen) own_slot_names() (linkml.utils.generator.Generator method) own_slots() (linkml.utils.generator.Generator method) owner (linkml_runtime.linkml_model.meta.SlotDefinition attribute) owners (linkml.utils.schemasynopsis.SchemaSynopsis attribute) ownslots (linkml.utils.schemasynopsis.SchemaSynopsis attribute) P parameterized_dimensions() (linkml.generators.pydanticgen.array.ArrayRangeGenerator method) (linkml.generators.pydanticgen.array.ListOfListsArray method) parent() (linkml.utils.generator.Generator method) parse_file_to_blocks() (in module linkml.utils.execute_tutorial) patch (linkml.utils.deprecation.SemVer attribute) path_rule (linkml_runtime.linkml_model.meta.SlotDefinition attribute) pattern (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) permissible_value_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) permissible_value_descendants() (linkml_runtime.utils.schemaview.SchemaView method) permissible_value_parent() (linkml_runtime.utils.schemaview.SchemaView method) permissible_values (linkml_runtime.linkml_model.meta.EnumDefinition attribute) plantuml_class_diagram (linkml.generators.docgen.DiagramType attribute) Policy (class in linkml_runtime.utils.inference_utils) post (linkml.utils.deprecation.SemVer attribute) post_l (linkml.utils.deprecation.SemVer attribute) post_n1 (linkml.utils.deprecation.SemVer attribute) post_n2 (linkml.utils.deprecation.SemVer attribute) pre (linkml.utils.deprecation.SemVer attribute) pre_l (linkml.utils.deprecation.SemVer attribute) pre_n (linkml.utils.deprecation.SemVer attribute) predefined (linkml.generators.pydanticgen.template.PydanticAttribute attribute) prefixes (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) prior_lines (linkml.utils.execute_tutorial.Block attribute) process_slot_usage_definitions() (linkml.utils.schemaloader.SchemaLoader method) process_slot_usages() (linkml.utils.schemaloader.SchemaLoader method) ProjectGenerator (class in linkml.generators.projectgen) prop_modifier() (linkml.generators.yumlgen.YumlGenerator method) ProtoGenerator (class in linkml.generators.protogen) pv_formula (linkml_runtime.linkml_model.meta.EnumDefinition attribute) pydantic_ver (linkml.generators.pydanticgen.array.ArrayRangeGenerator attribute) (linkml.generators.pydanticgen.template.TemplateModel attribute) PydanticAttribute (class in linkml.generators.pydanticgen.template) PydanticBaseModel (class in linkml.generators.pydanticgen.template) PydanticClass (class in linkml.generators.pydanticgen.template) PydanticEnum (class in linkml.generators.pydanticgen.template) PydanticGenerator (class in linkml.generators.pydanticgen) PydanticModule (class in linkml.generators.pydanticgen.template) PydanticValidationPlugin (class in linkml.validator.plugins) PydanticValidator (class in linkml.generators.pydanticgen.template) python (linkml.generators.docgen.MarkdownDialect attribute) PythonGenerator (class in linkml.generators.pythongen) R raise_value_error() (linkml.utils.schemaloader.SchemaLoader static method) raise_value_errors() (linkml.utils.schemaloader.SchemaLoader static method) range (linkml_runtime.linkml_model.meta.SlotDefinition attribute) range_class_has_identifier_slot() (linkml.generators.pydanticgen.PydanticGenerator method) range_expression (linkml_runtime.linkml_model.meta.SlotDefinition attribute) range_type_path() (linkml.utils.generator.Generator method) rangerefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) rank (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) RDFGenerator (class in linkml.generators.rdfgen) RDFLibDumper (class in linkml_runtime.dumpers) RDFLibLoader (class in linkml_runtime.loaders) reachable_from (linkml_runtime.linkml_model.meta.EnumDefinition attribute) readonly (linkml_runtime.linkml_model.meta.SlotDefinition attribute) recommendation (linkml.utils.deprecation.Deprecation attribute) recommended (linkml_runtime.linkml_model.meta.SlotDefinition attribute) RecommendedSlotsPlugin (class in linkml.validator.plugins) referenced (linkml.generators.yumlgen.YumlGenerator attribute) References (class in linkml.utils.typereferences) reflexive (linkml_runtime.linkml_model.meta.SlotDefinition attribute) reflexive_transitive_form_of (linkml_runtime.linkml_model.meta.SlotDefinition attribute) RefType (class in linkml.utils.typereferences) related_mappings (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) relational_role (linkml_runtime.linkml_model.meta.SlotDefinition attribute) remove_duplicates() (in module linkml.utils.helpers) removed (linkml.utils.deprecation.Deprecation property) removed_in (linkml.utils.deprecation.Deprecation attribute) render() (linkml.generators.pydanticgen.template.TemplateModel method) repr (linkml_runtime.linkml_model.meta.TypeDefinition attribute) represents_relationship (linkml_runtime.linkml_model.meta.ClassDefinition attribute) required (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) requires_metamodel (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.docgen.DocGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.linkmlgen.LinkmlGenerator attribute) (linkml.utils.generator.Generator attribute) resolve() (linkml.utils.schemaloader.SchemaLoader method) role (linkml_runtime.linkml_model.meta.SlotDefinition attribute) roots (linkml.utils.schemasynopsis.SchemaSynopsis attribute) rules (linkml_runtime.linkml_model.meta.ClassDefinition attribute) S schema (linkml.utils.datavalidator.DataValidator attribute) (linkml.utils.generator.Generator attribute) (linkml.utils.schema_builder.SchemaBuilder attribute) (linkml.utils.schemasynopsis.SchemaSynopsis attribute) schema_errors() (linkml.utils.schemaloader.SchemaLoader method) schema_title() (linkml.generators.docgen.DocGenerator method) SchemaBuilder (class in linkml.utils.schema_builder) SchemaDefinition (class in linkml_runtime.linkml_model.meta) SchemaLoader (class in linkml.utils.schemaloader) SchemaSynopsis (class in linkml.utils.schemasynopsis) SchemaView (class in linkml_runtime.utils.schemaview) schemaview (linkml.utils.generator.Generator attribute) see_also (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) SemVer (class in linkml.utils.deprecation) sep (linkml.generators.csvgen.CsvGenerator attribute) serialize() (linkml.generators.docgen.DocGenerator method) (linkml.generators.erdiagramgen.ERDiagramGenerator method) (linkml.generators.graphqlgen.GraphqlGenerator method) (linkml.generators.javagen.JavaGenerator method) (linkml.generators.jsonldcontextgen.ContextGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.linkmlgen.LinkmlGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.generators.protogen.ProtoGenerator method) (linkml.generators.pydanticgen.PydanticGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.generators.shaclgen.ShaclGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.sparqlgen.SparqlGenerator method) (linkml.generators.sqlalchemygen.SQLAlchemyGenerator method) (linkml.generators.sqltablegen.SQLTableGenerator method) (linkml.generators.terminusdbgen.TerminusdbGenerator method) (linkml.generators.typescriptgen.TypescriptGenerator method) (linkml.generators.yamlgen.YAMLGenerator method) (linkml.utils.generator.Generator method) serialize_classes() (linkml.generators.erdiagramgen.ERDiagramGenerator method) set_from_schema() (in module linkml.utils.mergeutils) set_slot() (linkml.utils.schema_builder.SchemaBuilder method) settings (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) ShaclGenerator (class in linkml.generators.shaclgen) shared (linkml_runtime.linkml_model.meta.SlotDefinition attribute) shared_arguments() (in module linkml.utils.generator) ShExGenerator (class in linkml.generators.shexgen) singular_name (linkml_runtime.linkml_model.meta.SlotDefinition attribute) slot_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) slot_applicable_range_elements() (linkml_runtime.utils.schemaview.SchemaView method) slot_children() (linkml_runtime.utils.schemaview.SchemaView method) slot_conditions (linkml_runtime.linkml_model.meta.ClassDefinition attribute) slot_definition_for() (linkml.utils.schemaloader.SchemaLoader method) slot_descendants() (linkml_runtime.utils.schemaview.SchemaView method) slot_for() (linkml.utils.generator.Generator method) slot_group (linkml_runtime.linkml_model.meta.SlotDefinition attribute) slot_is_true_for_metadata_property() (linkml_runtime.utils.schemaview.SchemaView method) slot_leaves() (linkml_runtime.utils.schemaview.SchemaView method) slot_name() (linkml.utils.generator.Generator method) slot_name_for() (linkml.utils.schemaloader.SchemaLoader static method) slot_name_mappings() (linkml_runtime.utils.schemaview.SchemaView method) slot_names_unique (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) slot_parents() (linkml_runtime.utils.schemaview.SchemaView method) slot_range_as_union() (linkml_runtime.utils.schemaview.SchemaView method) slot_range_path() (linkml.utils.generator.Generator method) slot_roots() (linkml_runtime.utils.schemaview.SchemaView method) slot_uri (linkml_runtime.linkml_model.meta.SlotDefinition attribute) slot_usage (linkml_runtime.linkml_model.meta.ClassDefinition attribute) slot_usage_name() (in module linkml.utils.mergeutils) slotclasses (linkml.utils.schemasynopsis.SchemaSynopsis attribute) SlotDefinition (class in linkml_runtime.linkml_model.meta) slotrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) slots (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) slotusages (linkml.utils.schemasynopsis.SchemaSynopsis attribute) sort_by (linkml.generators.docgen.DocGenerator attribute) sort_class_slots (linkml.utils.generator.Generator attribute) sort_classes() (linkml.generators.pydanticgen.PydanticGenerator static method) source (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) source_file (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) source_file_date (linkml.utils.generator.Generator attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) source_file_size (linkml.utils.generator.Generator attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) SparqlGenerator (class in linkml.generators.sparqlgen) SQLAlchemyGenerator (class in linkml.generators.sqlalchemygen) SQLStore (class in linkml.utils.sqlutils) SQLTableGenerator (class in linkml.generators.sqltablegen) stacktrace (linkml.utils.generator.Generator attribute) status (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) strict (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) structured_aliases (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) structured_pattern (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) strval() (in module linkml.utils.ifabsent_functions) subclass_of (linkml_runtime.linkml_model.meta.ClassDefinition attribute) subproperty_of (linkml_runtime.linkml_model.meta.SlotDefinition attribute) subset_for() (linkml.utils.generator.Generator method) subset_name() (linkml.utils.generator.Generator method) subsetrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) subsets (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) summarize_class_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_element() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_enum_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_slot_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_type_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summary() (linkml.utils.schemasynopsis.SchemaSynopsis method) symmetric (linkml_runtime.linkml_model.meta.SlotDefinition attribute) T template (linkml.generators.pydanticgen.template.ConditionalImport attribute) (linkml.generators.pydanticgen.template.Import attribute) (linkml.generators.pydanticgen.template.Imports attribute) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml.generators.pydanticgen.template.PydanticEnum attribute) (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml.generators.pydanticgen.template.PydanticValidator attribute) (linkml.generators.pydanticgen.template.TemplateModel attribute) template_dir (linkml.generators.pydanticgen.PydanticGenerator attribute) template_directory (linkml.generators.docgen.DocGenerator attribute) template_mappings (linkml.generators.docgen.DocGenerator attribute) TemplateModel (class in linkml.generators.pydanticgen.template) TerminusdbGenerator (class in linkml.generators.terminusdbgen) title (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.utils.execute_tutorial.Block attribute) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) to_sqla() (linkml.utils.sqlutils.SQLStore method) todos (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) transitive (linkml_runtime.linkml_model.meta.SlotDefinition attribute) transitive_form_of (linkml_runtime.linkml_model.meta.SlotDefinition attribute) tree_root (linkml_runtime.linkml_model.meta.ClassDefinition attribute) TsvLoader (class in linkml.validator.loaders) type_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) type_parents() (linkml_runtime.utils.schemaview.SchemaView method) typebases (linkml.utils.schemasynopsis.SchemaSynopsis attribute) TypeDefinition (class in linkml_runtime.linkml_model.meta) typeof (linkml_runtime.linkml_model.meta.TypeDefinition attribute) typeofs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) typerefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) types (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) TypescriptGenerator (class in linkml.generators.typescriptgen) U union_of (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) unique_keys (linkml_runtime.linkml_model.meta.ClassDefinition attribute) unit (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) update() (linkml.utils.typereferences.References method) uri (linkml_runtime.linkml_model.meta.TypeDefinition attribute) uri() (linkml.generators.docgen.DocGenerator method) uri_for() (in module linkml.utils.ifabsent_functions) uri_link() (linkml.generators.docgen.DocGenerator method) usage_index() (linkml_runtime.utils.schemaview.SchemaView method) usage_slot_name (linkml_runtime.linkml_model.meta.SlotDefinition attribute) use_class_uris (linkml.generators.docgen.DocGenerator attribute) use_memory (linkml.utils.sqlutils.SQLStore attribute) use_slot_uris (linkml.generators.docgen.DocGenerator attribute) uses_schemaloader (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.docgen.DocGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.linkmlgen.LinkmlGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.utils.generator.Generator attribute) useuris (linkml.utils.generator.Generator attribute) V valid_formats (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.docgen.DocGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.linkmlgen.LinkmlGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) validate() (in module linkml.validator) (linkml.validator.Validator method) validate_dict() (linkml.utils.datavalidator.DataValidator method) validate_file() (in module linkml.validator) validate_item_names() (linkml.utils.schemaloader.SchemaLoader method) validate_object() (in module linkml.utils.validation) validate_source() (linkml.validator.Validator method) ValidationPlugin (class in linkml.validator.plugins) Validator (class in linkml.validator) validators (linkml.generators.pydanticgen.template.PydanticClass property) value (linkml.generators.pydanticgen.template.EnumValue attribute) value_presence (linkml_runtime.linkml_model.meta.SlotDefinition attribute) values (linkml.generators.pydanticgen.template.PydanticEnum attribute) verbose (linkml.utils.generator.Generator attribute) version (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) visit_all_class_slots (linkml.generators.docgen.DocGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) visit_class() (linkml.generators.csvgen.CsvGenerator method) (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.utils.generator.Generator method) visit_class_slot() (linkml.utils.generator.Generator method) visit_enum() (linkml.utils.generator.Generator method) visit_schema() (linkml.generators.csvgen.CsvGenerator method) (linkml.generators.yumlgen.YumlGenerator method) (linkml.utils.generator.Generator method) visit_slot() (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.utils.generator.Generator method) visit_subset() (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.utils.generator.Generator method) visit_type() (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.utils.generator.Generator method) visits_are_sorted (linkml.utils.generator.Generator attribute) W warn() (linkml.utils.deprecation.Deprecation method) write_lines() (in module linkml.utils.execute_tutorial) write_to_file() (in module linkml.utils.helpers) writer (linkml.generators.csvgen.CsvGenerator attribute) Y yaml() (linkml.generators.docgen.DocGenerator method) YAMLDumper (class in linkml_runtime.dumpers) YAMLFILE gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option YAMLGenerator (class in linkml.generators.yamlgen) YamlLoader (class in linkml.validator.loaders) YAMLLoader (class in linkml_runtime.loaders) YumlGenerator (class in linkml.generators.yumlgen)