Index

Symbols

--add-ols-annotations gen-owl command line option linkml-generate-(full)-owl command line option --add-root-classes gen-owl command line option linkml-generate-(full)-owl command line option --all linkml-lint command line option, [1] --array-representations gen-pydantic command line option linkml-generate-(full)-pydantic command line option --assert-equivalent-classes gen-owl command line option linkml-generate-(full)-owl command line option --base gen-jsonld-context command line option gen-prefix-map command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-prefix-map command line option --black gen-pydantic command line option linkml-generate-(full)-pydantic command line option --classes gen-erdiagram command line option gen-markdown command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-yuml command line option --classname linkml-generate-(full)-graphviz command line option --classvars gen-python command line option linkml-generate-(full)-python command line option --closed gen-json-schema command line option gen-shacl command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-shacl command line option --config linkml-lint command line option, [1] linkml-validate command line option, [1], [2] --config-file gen-project command line option linkml-generate-(full)-project command line option --context gen-jsonld command line option gen-rdf command line option linkml-convert command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-rdf command line option --csv-field-size-limit linkml-sqldb command line option --declarative gen-sqla command line option linkml-generate-(full)-sqla command line option --default-permissible-value-type gen-owl command line option linkml-generate-(full)-owl command line option --default_length_oracle gen-sqltables command line option linkml-generate-(full)-sqltables command line option --diagram-name linkml-generate-(full)-yuml command line option --diagram-type gen-doc command line option linkml-generate-(full)-doc command line option --dialect gen-doc command line option gen-sqltables command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-sqltables command line option --dir gen-markdown command line option gen-project command line option gen-sparql command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-project command line option linkml-generate-(full)-sparql command line option --directory gen-doc command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-yuml command line option --dry-run linkml-generate-(full)-plantuml command line option --endpoint-url linkml-sparql-validate command line option linkml-validate-sparql command line option --enum-iri-separator gen-owl command line option linkml-generate-(full)-owl command line option --example-directory gen-doc command line option linkml-generate-(full)-doc command line option --exclude gen-project command line option linkml-generate-(full)-project command line option --exclude-annotations gen-shacl command line option linkml-generate-(full)-shacl command line option --exclude-attributes gen-erdiagram command line option linkml-generate-(full)-erdiagram command line option --exclude-imports gen-shacl command line option linkml-generate-(full)-shacl command line option --exit-on-first-failure linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option --extra-fields gen-pydantic command line option linkml-generate-(full)-pydantic command line option --fix linkml-lint command line option, [1] --flatprefixes gen-jsonld-context command line option linkml-generate-(full)-jsonld-context command line option --follow-references gen-erdiagram command line option linkml-generate-(full)-erdiagram command line option --format gen-csv command line option gen-doc command line option gen-erdiagram command line option, [1] gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option, [1] linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option linkml-lint command line option, [1] --gen-type-utils gen-typescript command line option linkml-generate-(full)-cli command line option --generate linkml-generate-(full)-yaml command line option --generate-classes gen-sqla command line option linkml-generate-(full)-sqla command line option --generate-records gen-java command line option linkml-generate-(full)-java command line option --generator-arguments gen-project command line option linkml-generate-(full)-project command line option --genmeta gen-doc command line option gen-python command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-python command line option --head gen-python command line option linkml-generate-(full)-python command line option --hierarchical-class-view gen-doc command line option linkml-generate-(full)-doc command line option --ignore-warnings linkml-lint command line option, [1] --img gen-markdown command line option linkml-generate-(full)-markdown command line option --importmap gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option --include gen-doc command line option gen-json-schema command line option gen-project command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-project command line option --include-annotations gen-shacl command line option linkml-generate-(full)-shacl command line option --include-context linkml-validate command line option, [1], [2] --include-imports gen-shacl command line option linkml-generate-(full)-shacl command line option --include-induced-slots gen-typescript command line option linkml-generate-(full)-cli command line option --include-mixins gen-excel command line option linkml-generate-(full)-excel command line option --include-range-class-descendants gen-json-schema command line option linkml-generate-(full)-json-schema command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option --include-top-level-diagram gen-doc command line option linkml-generate-(full)-doc command line option --include-upstream gen-erdiagram command line option linkml-generate-(full)-erdiagram command line option --indent gen-json-schema command line option linkml-generate-(full)-json-schema command line option --index-file gen-markdown command line option linkml-generate-(full)-markdown command line option --index-name gen-doc command line option linkml-generate-(full)-doc command line option --index-slot linkml-convert command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option --infer linkml-convert command line option --inline gen-json-schema command line option linkml-generate-(full)-json-schema command line option --input linkml-sparql-validate command line option linkml-validate-sparql command line option --input-format linkml-convert command line option linkml-sparql-validate command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option linkml-validate-sparql command line option --kroki-server linkml-generate-(full)-plantuml command line option --legacy-mode linkml-validate command line option, [1], [2] --limit linkml-sparql-validate command line option linkml-validate-sparql command line option --log_level gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-project command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option --map-fields gen-markdown command line option linkml-generate-(full)-markdown command line option --materialize gen-linkml command line option linkml-generate-(full)-linkml command line option --materialize-attributes gen-linkml command line option linkml-generate-(full)-linkml command line option --materialize-patterns gen-json-schema command line option gen-linkml command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-linkml command line option --max-hops gen-erdiagram command line option linkml-generate-(full)-erdiagram command line option --max-warnings linkml-lint command line option, [1] --mergeimports gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-project command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option --meta gen-pydantic command line option linkml-generate-(full)-pydantic command line option --metaclasses gen-owl command line option linkml-generate-(full)-owl command line option --metadata gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option --metadata-profile gen-owl command line option linkml-generate-(full)-owl command line option --metauris gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option --mixins-as-expressions gen-owl command line option linkml-generate-(full)-owl command line option --model gen-jsonld-context command line option linkml-generate-(full)-jsonld-context command line option --module linkml-convert command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option --named-graph linkml-sparql-validate command line option linkml-validate-sparql command line option --no-add-ols-annotations gen-owl command line option linkml-generate-(full)-owl command line option --no-add-root-classes gen-owl command line option linkml-generate-(full)-owl command line option --no-assert-equivalent-classes gen-owl command line option linkml-generate-(full)-owl command line option --no-classvars gen-python command line option linkml-generate-(full)-python command line option --no-declarative gen-sqla command line option linkml-generate-(full)-sqla command line option --no-exclude-attributes gen-erdiagram command line option linkml-generate-(full)-erdiagram command line option --no-exit-on-first-failure linkml-validate-jsonschema command line option --no-fix linkml-lint command line option, [1] --no-flatprefixes gen-jsonld-context command line option linkml-generate-(full)-jsonld-context command line option --no-follow-references gen-erdiagram command line option linkml-generate-(full)-erdiagram command line option --no-generate-classes gen-sqla command line option linkml-generate-(full)-sqla command line option --no-generate-records gen-java command line option linkml-generate-(full)-java command line option --no-genmeta gen-doc command line option gen-python command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-python command line option --no-head gen-python command line option linkml-generate-(full)-python command line option --no-hierarchical-class-view gen-doc command line option linkml-generate-(full)-doc command line option --no-include-context linkml-validate command line option, [1], [2] --no-include-top-level-diagram gen-doc command line option linkml-generate-(full)-doc command line option --no-infer linkml-convert command line option --no-materialize gen-linkml command line option linkml-generate-(full)-linkml command line option --no-materialize-attributes gen-linkml command line option linkml-generate-(full)-linkml command line option --no-materialize-patterns gen-json-schema command line option gen-linkml command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-linkml command line option --no-mergeimports gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-project command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option --no-metaclasses gen-owl command line option linkml-generate-(full)-owl command line option --no-metadata gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option --no-mixins-as-expressions gen-owl command line option linkml-generate-(full)-owl command line option --no-model gen-jsonld-context command line option linkml-generate-(full)-jsonld-context command line option --no-prefixes gen-jsonld-context command line option linkml-generate-(full)-jsonld-context command line option --no-pydantic gen-sqla command line option linkml-generate-(full)-sqla command line option --no-range-class-descendants gen-json-schema command line option linkml-generate-(full)-json-schema command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option --no-raw linkml-generate-(full)-yaml command line option --no-render-imports gen-doc command line option linkml-generate-(full)-doc command line option --no-slots gen-python command line option linkml-generate-(full)-python command line option --no-stacktrace gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option

--no-structural gen-erdiagram command line option linkml-generate-(full)-erdiagram command line option --no-subfolder-type-separation gen-doc command line option linkml-generate-(full)-doc command line option --no-target-class-from-path linkml-convert command line option --no-type-objects gen-owl command line option linkml-generate-(full)-owl command line option --no-use-class-uris gen-doc command line option linkml-generate-(full)-doc command line option --no-use-foreign-keys gen-sqla command line option gen-sqltables command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option --no-use-native-uris gen-owl command line option linkml-generate-(full)-owl command line option --no-use-slot-uris gen-doc command line option linkml-generate-(full)-doc command line option --no-validate gen-python command line option linkml-convert command line option linkml-generate-(full)-python command line option --noimages gen-markdown command line option linkml-generate-(full)-markdown command line option --non-closed gen-shacl command line option linkml-generate-(full)-shacl command line option --not-closed gen-json-schema command line option linkml-generate-(full)-json-schema command line option --notypesdir gen-markdown command line option linkml-generate-(full)-markdown command line option --noyuml gen-markdown command line option linkml-generate-(full)-markdown command line option --ontology-uri-suffix gen-owl command line option linkml-generate-(full)-owl command line option --out linkml-generate-(full)-graphviz command line option --output gen-excel command line option gen-linkml command line option gen-owl command line option gen-prefix-map command line option gen-rdf command line option gen-shex command line option gen-sssom command line option gen-typescript command line option linkml-convert command line option linkml-generate-(full)-cli command line option, [1] linkml-generate-(full)-excel command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sssom command line option linkml-lint command line option, [1] linkml-sparql-validate command line option linkml-validate-sparql command line option --output-directory gen-java command line option linkml-generate-(full)-java command line option --output-format linkml-convert command line option linkml-sparql-validate command line option linkml-validate-sparql command line option --package gen-java command line option linkml-generate-(full)-java command line option --prefix linkml-convert command line option --prefix-file linkml-convert command line option --prefixes gen-jsonld-context command line option linkml-generate-(full)-jsonld-context command line option --pydantic gen-sqla command line option linkml-generate-(full)-sqla command line option --python-import gen-sqltables command line option linkml-generate-(full)-sqltables command line option --quiet linkml-sqldb command line option --raw linkml-generate-(full)-yaml command line option --relmodel-output gen-sqltables command line option linkml-generate-(full)-sqltables command line option --render-imports gen-doc command line option linkml-generate-(full)-doc command line option --root gen-csv command line option linkml-generate-(full)-csv command line option --schema linkml-convert command line option linkml-generate-(full)-cli command line option linkml-sparql-validate command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option linkml-validate-sparql command line option --slots gen-python command line option linkml-generate-(full)-python command line option --sort-by gen-doc command line option linkml-generate-(full)-doc command line option --split-workbook-by-class gen-excel command line option linkml-generate-(full)-excel command line option --sqla-file gen-sqltables command line option linkml-generate-(full)-sqltables command line option --stacktrace gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option --strict-naming gen-graphql command line option linkml-generate-(full)-graphql command line option --structural gen-erdiagram command line option linkml-generate-(full)-erdiagram command line option --subfolder-type-separation gen-doc command line option linkml-generate-(full)-doc command line option --suffix gen-shacl command line option linkml-generate-(full)-shacl command line option --target-class linkml-convert command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option --target-class-from-path linkml-convert command line option --template-dir gen-pydantic command line option linkml-generate-(full)-pydantic command line option --template-directory gen-doc command line option linkml-generate-(full)-doc command line option --template-file gen-java command line option linkml-generate-(full)-java command line option --title-from gen-json-schema command line option linkml-generate-(full)-json-schema command line option --top-class gen-json-schema command line option linkml-generate-(full)-json-schema command line option --type-objects gen-owl command line option linkml-generate-(full)-owl command line option --use-class-uris gen-doc command line option linkml-generate-(full)-doc command line option --use-foreign-keys gen-sqla command line option gen-sqltables command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option --use-native-uris gen-owl command line option linkml-generate-(full)-owl command line option --use-slot-uris gen-doc command line option linkml-generate-(full)-doc command line option --useuris gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option --validate gen-python command line option linkml-convert command line option linkml-generate-(full)-python command line option linkml-lint command line option, [1] --validate-only linkml-lint command line option, [1] --validateonly linkml-generate-(full)-yaml command line option --verbose gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option linkml-lint command line option, [1] linkml-sqldb command line option --version gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml command line option linkml-convert command line option linkml-generate command line option linkml-generate-(full) command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-project command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-lint command line option, [1] linkml-sparql-validate command line option linkml-sqldb command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option linkml-validate-sparql command line option --warnonexist gen-markdown command line option linkml-generate-(full)-markdown command line option -A gen-project command line option linkml-generate-(full)-project command line option -a linkml-lint command line option, [1] -C gen-project command line option linkml-convert command line option linkml-generate-(full)-project command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option -c gen-erdiagram command line option gen-markdown command line option linkml-convert command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-yuml command line option linkml-lint command line option, [1] -D linkml-validate command line option, [1], [2] -d gen-doc command line option, [1] gen-json-schema command line option gen-markdown command line option gen-project command line option gen-sparql command line option linkml-generate-(full)-doc command line option, [1] linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-project command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-yuml command line option -f gen-csv command line option gen-doc command line option gen-erdiagram command line option, [1] gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-convert command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option, [1] linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option linkml-lint command line option, [1] linkml-sparql-validate command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option linkml-validate-sparql command line option -G linkml-sparql-validate command line option linkml-validate-sparql command line option -g linkml-generate-(full)-yaml command line option -I gen-markdown command line option gen-project command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-project command line option -i gen-json-schema command line option gen-markdown command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-markdown command line option linkml-sparql-validate command line option linkml-validate-sparql command line option -im gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option -k linkml-generate-(full)-plantuml command line option -L linkml-sparql-validate command line option linkml-validate-sparql command line option -M gen-markdown command line option linkml-generate-(full)-markdown command line option -m linkml-convert command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option -o gen-excel command line option gen-linkml command line option gen-owl command line option gen-prefix-map command line option gen-rdf command line option gen-shex command line option gen-sssom command line option linkml-convert command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sssom command line option linkml-lint command line option, [1] linkml-sparql-validate command line option linkml-validate-sparql command line option -P linkml-convert command line option -q linkml-sqldb command line option -r gen-csv command line option linkml-generate-(full)-csv command line option -S linkml-convert command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option -s gen-shacl command line option linkml-convert command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-shacl command line option linkml-sparql-validate command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option linkml-validate-sparql command line option -t gen-json-schema command line option linkml-convert command line option linkml-generate-(full)-json-schema command line option linkml-sparql-validate command line option linkml-validate-sparql command line option -U linkml-sparql-validate command line option linkml-validate-sparql command line option -u gen-typescript command line option linkml-generate-(full)-cli command line option -V gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml command line option linkml-convert command line option linkml-generate command line option linkml-generate-(full) command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-project command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option, [1] linkml-lint command line option, [1] linkml-sparql-validate command line option linkml-sqldb command line option linkml-validate command line option, [1], [2] linkml-validate-jsonschema command line option linkml-validate-sparql command line option -v gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option linkml-lint command line option, [1] linkml-sqldb command line option -X gen-project command line option linkml-generate-(full)-project command line option

A

abstracts (linkml.utils.schemasynopsis.SchemaSynopsis attribute) add_class() (linkml.utils.schema_builder.SchemaBuilder method) (linkml_runtime.utils.schemaview.SchemaView method) add_defaults() (linkml.utils.schema_builder.SchemaBuilder method) add_enum() (linkml.utils.schema_builder.SchemaBuilder method) (linkml_runtime.utils.schemaview.SchemaView method) add_id_prefixes() (linkml.utils.generator.Generator method) add_mappings() (linkml.utils.generator.Generator method) add_prefix() (linkml.utils.generator.Generator method) (linkml.utils.schema_builder.SchemaBuilder method) add_ref() (linkml.utils.schemasynopsis.SchemaSynopsis method) add_slot() (linkml.utils.schema_builder.SchemaBuilder method) (linkml_runtime.utils.schemaview.SchemaView method) add_subset() (linkml_runtime.utils.schemaview.SchemaView method) add_type() (linkml.utils.schema_builder.SchemaBuilder method) (linkml_runtime.utils.schemaview.SchemaView method) addref() (linkml.utils.typereferences.References method) adjust_slot() (linkml.generators.jsonldgen.JSONLDGenerator method) alias (built-in variable) (linkml.generators.pydanticgen.template.Import attribute) (linkml.generators.pydanticgen.template.ObjectImport attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) alias_root() (in module linkml.utils.mergeutils) aliased_slot_name() (linkml.utils.generator.Generator method) aliases (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) all_aliases() (linkml_runtime.utils.schemaview.SchemaView method) all_class() (linkml_runtime.utils.schemaview.SchemaView method) all_classes() (linkml_runtime.utils.schemaview.SchemaView method) all_element() (linkml_runtime.utils.schemaview.SchemaView method) all_elements() (linkml_runtime.utils.schemaview.SchemaView method) all_enum() (linkml_runtime.utils.schemaview.SchemaView method) all_enums() (linkml_runtime.utils.schemaview.SchemaView method) all_members (linkml_runtime.linkml_model.meta.SlotDefinition attribute) all_of (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute)

all_schema() (linkml_runtime.utils.schemaview.SchemaView method) all_slot() (linkml_runtime.utils.schemaview.SchemaView method) all_slots() (linkml.utils.generator.Generator method) (linkml_runtime.utils.schemaview.SchemaView method) all_subset() (linkml_runtime.utils.schemaview.SchemaView method) all_subsets() (linkml_runtime.utils.schemaview.SchemaView method) all_type() (linkml_runtime.utils.schemaview.SchemaView method) all_types() (linkml_runtime.utils.schemaview.SchemaView method) alt_descriptions (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) alternative (linkml.generators.pydanticgen.template.ConditionalImport attribute) ancestors() (linkml.utils.generator.Generator method) annotation_dict() (linkml_runtime.utils.schemaview.SchemaView method) annotations (linkml.utils.execute_tutorial.Block attribute) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) any_of (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) apply_to (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) applytorefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) applytos (linkml.utils.schemasynopsis.SchemaSynopsis attribute) array (linkml.generators.pydanticgen.array.ArrayRangeGenerator attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) array_consistent_n_dimensions() (linkml.generators.pydanticgen.array.ArrayValidator static method) array_dimensions_ordinal() (linkml.generators.pydanticgen.array.ArrayValidator static method) array_exact_dimensions() (linkml.generators.pydanticgen.array.ArrayValidator static method) array_explicitly_unbounded() (linkml.generators.pydanticgen.array.ArrayValidator static method) ArrayExpression (class in linkml_runtime.linkml_model.meta) ArrayRangeGenerator (class in linkml.generators.pydanticgen.array) ArrayRepresentation (class in linkml.generators.pydanticgen.array) Arrays ArrayValidator (class in linkml.generators.pydanticgen.array) as_dict() (linkml.utils.schema_builder.SchemaBuilder method) associations_generated (linkml.generators.yumlgen.YumlGenerator attribute) asymmetric (linkml_runtime.linkml_model.meta.SlotDefinition attribute) attributes (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute)

B

base (linkml_runtime.linkml_model.meta.TypeDefinition attribute) base_dir (linkml.utils.generator.Generator attribute) base_model (linkml.generators.pydanticgen.template.PydanticModule attribute) bases (linkml.generators.pydanticgen.template.PydanticClass attribute) bindings (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute)

black (linkml.generators.pydanticgen.PydanticGenerator attribute) Block (class in linkml.utils.execute_tutorial) box_generated (linkml.generators.yumlgen.YumlGenerator attribute) broad_mappings (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) BuildResult (class in linkml.generators.common.build)

C

cardinality() (linkml.generators.yumlgen.YumlGenerator static method) cast_imports() (linkml.generators.pydanticgen.template.PydanticModule class method) categories (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) category (linkml.utils.execute_tutorial.Block attribute) check_prefix() (linkml.utils.schemaloader.SchemaLoader method) check_prefixes() (linkml.utils.schemaloader.SchemaLoader method) children_are_mutually_disjoint (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) class_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) class_associations() (linkml.generators.yumlgen.YumlGenerator method) class_bases (linkml.generators.pydanticgen.PydanticGenerator property) class_box() (linkml.generators.yumlgen.YumlGenerator method) class_children() (linkml_runtime.utils.schemaview.SchemaView method) class_class_curie (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.EnumDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) class_class_uri (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.EnumDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) class_descendants() (linkml_runtime.utils.schemaview.SchemaView method) class_identifier() (linkml.utils.generator.Generator method) class_identifier_path() (linkml.utils.generator.Generator method) class_induced_slots() (linkml_runtime.utils.schemaview.SchemaView method) class_leaves() (linkml_runtime.utils.schemaview.SchemaView method) class_model_uri (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.EnumDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) class_name (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.EnumDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute)

class_name_mappings() (linkml_runtime.utils.schemaview.SchemaView method) class_names (linkml.generators.pydanticgen.template.PydanticModule property) class_or_type_for() (linkml.utils.generator.Generator method) class_or_type_name() (linkml.utils.generator.Generator method) class_parents() (linkml_runtime.utils.schemaview.SchemaView method) class_roots() (linkml_runtime.utils.schemaview.SchemaView method) class_slots() (linkml_runtime.utils.schemaview.SchemaView method) class_uri (linkml_runtime.linkml_model.meta.ClassDefinition attribute) ClassDefinition (class in linkml_runtime.linkml_model.meta) classes (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) classification_rules (linkml_runtime.linkml_model.meta.ClassDefinition attribute) classrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) ClassResult (class in linkml.generators.common.build) close_mappings (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) closure (linkml.generators.csvgen.CsvGenerator attribute) code_set (linkml_runtime.linkml_model.meta.EnumDefinition attribute) code_set_tag (linkml_runtime.linkml_model.meta.EnumDefinition attribute) code_set_version (linkml_runtime.linkml_model.meta.EnumDefinition attribute) codesets (linkml.utils.schemasynopsis.SchemaSynopsis attribute) comments (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) compile() (linkml.utils.sqlutils.SQLStore method) compile_module() (linkml.generators.pydanticgen.PydanticGenerator method) compile_native() (linkml.utils.sqlutils.SQLStore method) concepts (linkml_runtime.linkml_model.meta.EnumDefinition attribute) condition (linkml.generators.pydanticgen.template.ConditionalImport attribute) ConditionalImport (class in linkml.generators.pydanticgen.template) Config (class in linkml_runtime.utils.inference_utils) content (linkml.utils.execute_tutorial.Block attribute) context (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) ContextGenerator (class in linkml.generators.jsonldcontextgen) contributors (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) convert_to_snake_case() (in module linkml.utils.helpers) created_by (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) created_on (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) CSVDumper (class in linkml_runtime.dumpers) CsvGenerator (class in linkml.generators.csvgen) CsvLoader (class in linkml.validator.loaders) CSVLoader (class in linkml_runtime.loaders)

D

DATA_SOURCES linkml-validate command line option, [1], [2] DataValidator (class in linkml.utils.datavalidator) db_exists() (linkml.utils.sqlutils.SQLStore method) default_curi_maps (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) default_name (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) default_prefix (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) default_prefix() (linkml.utils.generator.Generator method) default_range (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) defining_slots (linkml_runtime.linkml_model.meta.ClassDefinition attribute) definingslots (linkml.utils.schemasynopsis.SchemaSynopsis attribute) delete_class() (linkml_runtime.utils.schemaview.SchemaView method) delete_enum() (linkml_runtime.utils.schemaview.SchemaView method) delete_slot() (linkml_runtime.utils.schemaview.SchemaView method) delete_subset() (linkml_runtime.utils.schemaview.SchemaView method) delete_type() (linkml_runtime.utils.schemaview.SchemaView method) deprecated (linkml.utils.deprecation.Deprecation property) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) deprecated_element_has_exact_replacement (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) deprecated_element_has_possible_replacement (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) deprecated_in (linkml.utils.deprecation.Deprecation attribute) Deprecation Guide Log Deprecation (class in linkml.utils.deprecation) deprecation_warning() (in module linkml.utils) (in module linkml.utils.deprecation) description (linkml.generators.pydanticgen.template.EnumValue attribute) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml.generators.pydanticgen.template.PydanticEnum attribute) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute)

designates_type (linkml_runtime.linkml_model.meta.SlotDefinition attribute) dev (linkml.utils.deprecation.SemVer attribute) dev_l (linkml.utils.deprecation.SemVer attribute) dev_n (linkml.utils.deprecation.SemVer attribute) diagram_name (linkml.generators.yumlgen.YumlGenerator attribute) dimension_exact_cardinality() (linkml.generators.pydanticgen.array.ArrayValidator static method) dimension_ordinal() (linkml.generators.pydanticgen.array.ArrayValidator static method) DimensionExpression (class in linkml_runtime.linkml_model.meta) dimensions (built-in variable) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) directory (linkml.generators.yumlgen.YumlGenerator attribute) directory_output (linkml.utils.generator.Generator attribute) disjoint_with (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) DocGenerator (class in linkml.generators.docgen) domain (linkml_runtime.linkml_model.meta.SlotDefinition attribute) domain_of (linkml_runtime.linkml_model.meta.SlotDefinition attribute) domain_slots() (linkml.utils.generator.Generator method) dtype (linkml.generators.pydanticgen.array.ArrayRangeGenerator attribute) dump() (linkml.utils.sqlutils.SQLStore method) (linkml_runtime.dumpers.CSVDumper method) (linkml_runtime.dumpers.RDFLibDumper method) (linkml_runtime.dumpers.YAMLDumper method) dumps() (linkml_runtime.dumpers.CSVDumper method) (linkml_runtime.dumpers.RDFLibDumper method) (linkml_runtime.dumpers.YAMLDumper method)

E

emit_metadata (linkml.generators.rdfgen.RDFGenerator attribute) emit_prefixes (linkml.utils.generator.Generator attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) empty_references() (in module linkml.utils.schemasynopsis) end_class() (linkml.utils.generator.Generator method) end_schema() (linkml.generators.csvgen.CsvGenerator method) (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.generators.rdfgen.RDFGenerator method) (linkml.utils.generator.Generator method) enum_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) enum_identifier_path() (linkml.utils.generator.Generator static method) enum_parents() (linkml_runtime.utils.schemaview.SchemaView method) enum_range (linkml_runtime.linkml_model.meta.SlotDefinition attribute) enum_uri (linkml_runtime.linkml_model.meta.EnumDefinition attribute) EnumDefinition (class in linkml_runtime.linkml_model.meta) enumrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) EnumResult (class in linkml.generators.common.build) enums (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) EnumValue (class in linkml.generators.pydanticgen.template) epoch (linkml.utils.deprecation.SemVer attribute) equals_expression (linkml_runtime.linkml_model.meta.SlotDefinition attribute) equals_number (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute)

equals_string (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) equals_string_in (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) ERDiagramGenerator (class in linkml.generators.erdiagramgen) error (linkml.utils.execute_tutorial.Block attribute) errors() (linkml.utils.schemasynopsis.SchemaSynopsis method) exact_cardinality (built-in variable) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) exact_mappings (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) exact_number_dimensions (built-in variable) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) exactly_one_of (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) examples (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) execute_blocks() (in module linkml.utils.execute_tutorial) expand_curie() (linkml_runtime.utils.schemaview.SchemaView method) expected_fail (linkml.utils.execute_tutorial.Block attribute) extensions (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) extra_fields (linkml.generators.pydanticgen.template.PydanticBaseModel attribute)

F

field (linkml.generators.pydanticgen.template.PydanticAttribute property) fields (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) file_extension (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.utils.generator.Generator attribute) filtered_cls_slots() (linkml.generators.yumlgen.YumlGenerator method) focus_classes (linkml.generators.yumlgen.YumlGenerator attribute)

format (linkml.utils.generator.Generator attribute) formatted_element_name() (linkml.utils.generator.Generator method) from_package() (linkml.utils.deprecation.SemVer class method) from_schema (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) from_sqla() (linkml.utils.sqlutils.SQLStore method) from_str() (linkml.utils.deprecation.SemVer class method)

G

gen-csv command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --root --stacktrace --useuris --verbose --version -f -im -r -V -v YAMLFILE gen-doc command line option --diagram-type --dialect --directory --example-directory --format --genmeta --hierarchical-class-view --importmap --include --include-top-level-diagram --index-name --log_level --mergeimports --metadata --metauris --no-genmeta --no-hierarchical-class-view --no-include-top-level-diagram --no-mergeimports --no-metadata --no-render-imports --no-stacktrace --no-subfolder-type-separation --no-use-class-uris --no-use-slot-uris --render-imports --sort-by --stacktrace --subfolder-type-separation --template-directory --use-class-uris --use-slot-uris --useuris --verbose --version -d, [1] -f -im -V -v YAMLFILE gen-erdiagram command line option --classes --exclude-attributes --follow-references --format, [1] --importmap --include-upstream --log_level --max-hops --mergeimports --metadata --metauris --no-exclude-attributes --no-follow-references --no-mergeimports --no-metadata --no-stacktrace --no-structural --stacktrace --structural --useuris --verbose --version -c -f, [1] -im -V -v YAMLFILE gen-excel command line option --format --importmap --include-mixins --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --split-workbook-by-class --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE gen-graphql command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --strict-naming --useuris --verbose --version -f -im -V -v YAMLFILE gen-java command line option --format --generate-records --importmap --log_level --mergeimports --metadata --metauris --no-generate-records --no-mergeimports --no-metadata --no-stacktrace --output-directory --package --stacktrace --template-file --useuris --verbose --version -f -im -V -v YAMLFILE gen-json-schema command line option --closed --format --importmap --include --include-range-class-descendants --indent --inline --log_level --materialize-patterns --mergeimports --metadata --metauris --no-materialize-patterns --no-mergeimports --no-metadata --no-range-class-descendants --no-stacktrace --not-closed --stacktrace --title-from --top-class --useuris --verbose --version -d -f -i -im -t -V -v YAMLFILE gen-jsonld command line option --context --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE gen-jsonld-context command line option --base --flatprefixes --format --importmap --log_level --mergeimports --metadata --metauris --model --no-flatprefixes --no-mergeimports --no-metadata --no-model --no-prefixes --no-stacktrace --prefixes --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE gen-linkml command line option --format --importmap --log_level --materialize --materialize-attributes --materialize-patterns --mergeimports --metadata --metauris --no-materialize --no-materialize-attributes --no-materialize-patterns --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE gen-markdown command line option --classes --dir --format --img --importmap --index-file --log_level --map-fields --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --noimages --notypesdir --noyuml --stacktrace --useuris --verbose --version --warnonexist -c -d -f -i -I -im -M -V -v YAMLFILE gen-owl command line option --add-ols-annotations --add-root-classes --assert-equivalent-classes --default-permissible-value-type --enum-iri-separator --format --importmap --log_level --mergeimports --metaclasses --metadata --metadata-profile --metauris --mixins-as-expressions --no-add-ols-annotations --no-add-root-classes --no-assert-equivalent-classes --no-mergeimports --no-metaclasses --no-metadata --no-mixins-as-expressions --no-stacktrace --no-type-objects --no-use-native-uris --ontology-uri-suffix --output --stacktrace --type-objects --use-native-uris --useuris --verbose --version -f -im -o -V -v YAMLFILE gen-prefix-map command line option --base --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE

gen-project command line option --config-file --dir --exclude --generator-arguments --include --log_level --mergeimports --no-mergeimports --version -A -C -d -I -V -X YAMLFILE gen-proto command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE gen-pydantic command line option --array-representations --black --extra-fields --format --importmap --log_level --mergeimports --meta --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --template-dir --useuris --verbose --version -f -im -V -v YAMLFILE gen-python command line option --classvars --format --genmeta --head --importmap --log_level --mergeimports --metadata --metauris --no-classvars --no-genmeta --no-head --no-mergeimports --no-metadata --no-slots --no-stacktrace --no-validate --slots --stacktrace --useuris --validate --verbose --version -f -im -V -v YAMLFILE gen-rdf command line option --context --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE gen-shacl command line option --closed --exclude-annotations --exclude-imports --format --importmap --include-annotations --include-imports --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --non-closed --stacktrace --suffix --useuris --verbose --version -f -im -s -V -v YAMLFILE gen-shex command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE gen-sparql command line option --dir --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -d -f -im -V -v YAMLFILE gen-sqla command line option --declarative --format --generate-classes --importmap --log_level --mergeimports --metadata --metauris --no-declarative --no-generate-classes --no-mergeimports --no-metadata --no-pydantic --no-stacktrace --no-use-foreign-keys --pydantic --stacktrace --use-foreign-keys --useuris --verbose --version -f -im -V -v YAMLFILE gen-sqltables command line option --default_length_oracle --dialect --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --no-use-foreign-keys --python-import --relmodel-output --sqla-file --stacktrace --use-foreign-keys --useuris --verbose --version -f -im -V -v YAMLFILE gen-sssom command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE gen-terminusdb command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE gen-typescript command line option --format --gen-type-utils --importmap --include-induced-slots --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -u -V -v YAMLFILE gen_classes (linkml.generators.yumlgen.YumlGenerator attribute) generate_collection_key() (linkml.generators.pydanticgen.PydanticGenerator method) generate_header() (linkml.generators.csvgen.CsvGenerator method) generate_module_import() (linkml.generators.pydanticgen.PydanticGenerator method) generate_python_range() (linkml.generators.pydanticgen.PydanticGenerator method) generate_split() (linkml.generators.pydanticgen.PydanticGenerator class method) generated (linkml.generators.yumlgen.YumlGenerator attribute) generation_date (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) Generator (class in linkml.utils.generator) generatorname (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.linkmlgen.LinkmlGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) generatorversion (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.linkmlgen.LinkmlGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) get_accepted_type_designator_values() (in module linkml.generators.common.type_designators) get_array_representations_range() (linkml.generators.pydanticgen.PydanticGenerator method) get_children() (linkml_runtime.utils.schemaview.SchemaView method) get_class() (linkml_runtime.utils.schemaview.SchemaView method) get_classes_by_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_classes_modifying_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_dumper() (in module linkml.utils.datautils) get_element() (linkml_runtime.utils.schemaview.SchemaView method) get_elements_applicable_by_identifier() (linkml_runtime.utils.schemaview.SchemaView method) get_elements_applicable_by_prefix() (linkml_runtime.utils.schemaview.SchemaView method) get_enum() (linkml_runtime.utils.schemaview.SchemaView method) get_generator() (linkml.generators.pydanticgen.array.ArrayRangeGenerator class method) get_identifier_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_key_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_loader() (in module linkml.utils.datautils) get_mapping_index() (linkml_runtime.utils.schemaview.SchemaView method) get_mappings() (linkml_runtime.utils.schemaview.SchemaView method) get_metamodel_slot_name() (linkml.utils.generator.Generator method) get_range_associated_slots() (in module linkml.utils.helpers) get_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_slots_by_enum() (linkml_runtime.utils.schemaview.SchemaView method) get_subset() (linkml_runtime.utils.schemaview.SchemaView method) get_type() (linkml_runtime.utils.schemaview.SchemaView method) get_type_designator_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_type_designator_value() (in module linkml.generators.common.type_designators) get_uri() (linkml_runtime.utils.schemaview.SchemaView method) GraphqlGenerator (class in linkml.generators.graphqlgen) group (linkml.generators.pydanticgen.template.ConditionalImport property) (linkml.generators.pydanticgen.template.Import property) group_order (linkml.generators.pydanticgen.template.Imports attribute)

H

has_bounded_dimensions (linkml.generators.pydanticgen.array.ArrayRangeGenerator property)

has_member (linkml_runtime.linkml_model.meta.SlotDefinition attribute)

I

id (linkml.utils.schema_builder.SchemaBuilder attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) identifier (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) ifabsent (linkml_runtime.linkml_model.meta.SlotDefinition attribute) implicit_prefix (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) Import (class in linkml.generators.pydanticgen.template) IMPORT_GROUPS (in module linkml.generators.pydanticgen.template) import_groups (linkml.generators.pydanticgen.template.Imports property) imported_from (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) importmap (linkml.utils.generator.Generator attribute) (linkml_runtime.utils.schemaview.SchemaView attribute) Imports (class in linkml.generators.pydanticgen.template) imports (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.pydanticgen.template.Imports attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) imports_are_merged() (linkml.generators.pydanticgen.template.Imports class method) imports_closure() (linkml_runtime.utils.schemaview.SchemaView method) in_language (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) in_schema() (linkml_runtime.utils.schemaview.SchemaView method) in_subset (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) include (linkml.utils.generator.Generator attribute) (linkml_runtime.linkml_model.meta.EnumDefinition attribute) include_metadata() (linkml.generators.pydanticgen.PydanticGenerator method) induced_class() (linkml_runtime.utils.schemaview.SchemaView method) induced_enum() (linkml_runtime.utils.schemaview.SchemaView method) induced_slot() (linkml_runtime.utils.schemaview.SchemaView method) induced_type() (linkml_runtime.utils.schemaview.SchemaView method) infer_all_slot_values() (in module linkml_runtime.utils.inference_utils) infer_index_slot() (in module linkml.utils.datautils) infer_root_class() (in module linkml.utils.datautils)

infer_slot_value() (in module linkml_runtime.utils.inference_utils) inherited (linkml_runtime.linkml_model.meta.SlotDefinition attribute) inherits (linkml_runtime.linkml_model.meta.EnumDefinition attribute) injected_classes (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.pydanticgen.template.PydanticModule attribute) injected_fields (linkml.generators.pydanticgen.PydanticGenerator attribute) inlined (linkml_runtime.linkml_model.meta.SlotDefinition attribute) inlined_as_list (linkml_runtime.linkml_model.meta.SlotDefinition attribute) INPUT linkml-convert command line option linkml-validate-jsonschema command line option inschema (linkml.utils.schemasynopsis.SchemaSynopsis attribute) inverse (linkml_runtime.linkml_model.meta.SlotDefinition attribute) inverse() (linkml_runtime.utils.schemaview.SchemaView method) inverses (linkml.utils.schemasynopsis.SchemaSynopsis attribute) irreflexive (linkml_runtime.linkml_model.meta.SlotDefinition attribute) is_a (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) is_bash() (linkml.utils.execute_tutorial.Block method) is_class_field (linkml_runtime.linkml_model.meta.SlotDefinition attribute) is_class_unconstrained() (linkml.utils.generator.Generator static method) is_file_block() (linkml.utils.execute_tutorial.Block method) is_grouping_slot (linkml_runtime.linkml_model.meta.SlotDefinition attribute) is_inlined() (linkml_runtime.utils.schemaview.SchemaView method) is_mixin() (linkml_runtime.utils.schemaview.SchemaView method) is_multivalued() (linkml_runtime.utils.schemaview.SchemaView method) is_relationship() (linkml_runtime.utils.schemaview.SchemaView method) is_schema (linkml.generators.pydanticgen.template.Import attribute) is_simple_dict() (in module linkml.utils.helpers) is_slot_percent_encoded() (linkml_runtime.utils.schemaview.SchemaView method) is_stdout() (linkml.utils.execute_tutorial.Block method) is_usage_slot (linkml_runtime.linkml_model.meta.SlotDefinition attribute) isarefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) issue (linkml.utils.deprecation.Deprecation attribute) iter_results() (linkml.validator.Validator method) iter_results_from_source() (linkml.validator.Validator method)

J

JavaGenerator (class in linkml.generators.javagen) JSONDumper (class in linkml_runtime.dumpers) JSONLDGenerator (class in linkml.generators.jsonldgen)

JsonLoader (class in linkml.validator.loaders) JSONLoader (class in linkml_runtime.loaders) JsonSchemaGenerator (class in linkml.generators.jsonschemagen) JsonschemaValidationPlugin (class in linkml.validator.plugins)

K

key (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute)

keywords (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute)

L

label (linkml.generators.pydanticgen.template.EnumValue attribute) last_updated_on (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) license (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) LifecycleMixin (class in linkml.generators.common.lifecycle) linkml command line option --version -V linkml-convert command line option --context --index-slot --infer --input-format --module --no-infer --no-target-class-from-path --no-validate --output --output-format --prefix --prefix-file --schema --target-class --target-class-from-path --validate --version -C -c -f -m -o -P -S -s -t -V INPUT linkml-generate command line option --version -V linkml-generate-(full) command line option --version -V linkml-generate-(full)-cli command line option --format --gen-type-utils --importmap --include-induced-slots --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output, [1] --schema --stacktrace --useuris --verbose --version -f -im -o -s -u -V -v YAMLFILE linkml-generate-(full)-csv command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --root --stacktrace --useuris --verbose --version -f -im -r -V -v YAMLFILE linkml-generate-(full)-doc command line option --diagram-type --dialect --directory --example-directory --format --genmeta --hierarchical-class-view --importmap --include --include-top-level-diagram --index-name --log_level --mergeimports --metadata --metauris --no-genmeta --no-hierarchical-class-view --no-include-top-level-diagram --no-mergeimports --no-metadata --no-render-imports --no-stacktrace --no-subfolder-type-separation --no-use-class-uris --no-use-slot-uris --render-imports --sort-by --stacktrace --subfolder-type-separation --template-directory --use-class-uris --use-slot-uris --useuris --verbose --version -d, [1] -f -im -V -v YAMLFILE linkml-generate-(full)-erdiagram command line option --classes --exclude-attributes --follow-references --format, [1] --importmap --include-upstream --log_level --max-hops --mergeimports --metadata --metauris --no-exclude-attributes --no-follow-references --no-mergeimports --no-metadata --no-stacktrace --no-structural --stacktrace --structural --useuris --verbose --version -c -f, [1] -im -V -v YAMLFILE linkml-generate-(full)-excel command line option --format --importmap --include-mixins --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --split-workbook-by-class --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE linkml-generate-(full)-golang command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-golr-views command line option --dir --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -d -f -im -V -v YAMLFILE linkml-generate-(full)-graphql command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --strict-naming --useuris --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-graphviz command line option --classname --directory --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --out --stacktrace --useuris --verbose --version -c -d -f -im -o -V -v YAMLFILE linkml-generate-(full)-java command line option --format --generate-records --importmap --log_level --mergeimports --metadata --metauris --no-generate-records --no-mergeimports --no-metadata --no-stacktrace --output-directory --package --stacktrace --template-file --useuris --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-json-schema command line option --closed --format --importmap --include --include-range-class-descendants --indent --inline --log_level --materialize-patterns --mergeimports --metadata --metauris --no-materialize-patterns --no-mergeimports --no-metadata --no-range-class-descendants --no-stacktrace --not-closed --stacktrace --title-from --top-class --useuris --verbose --version -d -f -i -im -t -V -v YAMLFILE linkml-generate-(full)-jsonld command line option --context --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-jsonld-context command line option --base --flatprefixes --format --importmap --log_level --mergeimports --metadata --metauris --model --no-flatprefixes --no-mergeimports --no-metadata --no-model --no-prefixes --no-stacktrace --prefixes --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-linkml command line option --format --importmap --log_level --materialize --materialize-attributes --materialize-patterns --mergeimports --metadata --metauris --no-materialize --no-materialize-attributes --no-materialize-patterns --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE linkml-generate-(full)-markdown command line option --classes --dir --format --img --importmap --index-file --log_level --map-fields --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --noimages --notypesdir --noyuml --stacktrace --useuris --verbose --version --warnonexist -c -d -f -i -I -im -M -V -v YAMLFILE linkml-generate-(full)-namespaces command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-owl command line option --add-ols-annotations --add-root-classes --assert-equivalent-classes --default-permissible-value-type --enum-iri-separator --format --importmap --log_level --mergeimports --metaclasses --metadata --metadata-profile --metauris --mixins-as-expressions --no-add-ols-annotations --no-add-root-classes --no-assert-equivalent-classes --no-mergeimports --no-metaclasses --no-metadata --no-mixins-as-expressions --no-stacktrace --no-type-objects --no-use-native-uris --ontology-uri-suffix --output --stacktrace --type-objects --use-native-uris --useuris --verbose --version -f -im -o -V -v YAMLFILE linkml-generate-(full)-plantuml command line option --classes --directory --dry-run --format --importmap --kroki-server --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -c -d -f -im -k -V -v YAMLFILE linkml-generate-(full)-prefix-map command line option --base --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE

linkml-generate-(full)-project command line option --config-file --dir --exclude --generator-arguments --include --log_level --mergeimports --no-mergeimports --version -A -C -d -I -V -X YAMLFILE linkml-generate-(full)-proto command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-pydantic command line option --array-representations --black --extra-fields --format --importmap --log_level --mergeimports --meta --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --template-dir --useuris --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-python command line option --classvars --format --genmeta --head --importmap --log_level --mergeimports --metadata --metauris --no-classvars --no-genmeta --no-head --no-mergeimports --no-metadata --no-slots --no-stacktrace --no-validate --slots --stacktrace --useuris --validate --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-rdf command line option --context --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE linkml-generate-(full)-shacl command line option --closed --exclude-annotations --exclude-imports --format --importmap --include-annotations --include-imports --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --non-closed --stacktrace --suffix --useuris --verbose --version -f -im -s -V -v YAMLFILE linkml-generate-(full)-shex command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE linkml-generate-(full)-sparql command line option --dir --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -d -f -im -V -v YAMLFILE linkml-generate-(full)-sqla command line option --declarative --format --generate-classes --importmap --log_level --mergeimports --metadata --metauris --no-declarative --no-generate-classes --no-mergeimports --no-metadata --no-pydantic --no-stacktrace --no-use-foreign-keys --pydantic --stacktrace --use-foreign-keys --useuris --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-sqltables command line option --default_length_oracle --dialect --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --no-use-foreign-keys --python-import --relmodel-output --sqla-file --stacktrace --use-foreign-keys --useuris --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-sssom command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --output --stacktrace --useuris --verbose --version -f -im -o -V -v YAMLFILE linkml-generate-(full)-summary command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-terminusdb command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose --version -f -im -V -v YAMLFILE linkml-generate-(full)-yaml command line option --format --generate --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-raw --no-stacktrace --raw --stacktrace --useuris --validateonly --verbose --version -f -g -im -V, [1] -v YAMLFILE linkml-generate-(full)-yuml command line option --classes --diagram-name --directory --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-stacktrace --stacktrace --useuris --verbose -c -d -f -im -v YAMLFILE linkml-lint command line option --all, [1] --config, [1] --fix, [1] --format, [1] --ignore-warnings, [1] --max-warnings, [1] --no-fix, [1] --output, [1] --validate, [1] --validate-only, [1] --verbose, [1] --version, [1] -a, [1] -c, [1] -f, [1] -o, [1] -v, [1] -V, [1] SCHEMA, [1] linkml-sparql-validate command line option --endpoint-url --input --input-format --limit --named-graph --output --output-format --schema --version -f -G -i -L -o -s -t -U -V linkml-sqldb command line option --csv-field-size-limit --quiet --verbose --version -q -v -V linkml-validate command line option --config, [1], [2] --exit-on-first-failure, [1], [2] --include-context, [1], [2] --include-range-class-descendants, [1], [2] --index-slot, [1], [2] --input-format, [1], [2] --legacy-mode, [1], [2] --module, [1], [2] --no-include-context, [1], [2] --no-range-class-descendants, [1], [2] --schema, [1], [2] --target-class, [1], [2] --version, [1], [2] -C, [1], [2] -D, [1], [2] -f, [1], [2] -m, [1], [2] -s, [1], [2] -S, [1], [2] -V, [1], [2] DATA_SOURCES, [1], [2] linkml-validate-jsonschema command line option --exit-on-first-failure --include-range-class-descendants --index-slot --input-format --module --no-exit-on-first-failure --no-range-class-descendants --schema --target-class --version -C -f -m -S -s -V INPUT linkml-validate-sparql command line option --endpoint-url --input --input-format --limit --named-graph --output --output-format --schema --version -f -G -i -L -o -s -t -U -V linkml.generators.common module linkml.generators.common.build module linkml.generators.common.lifecycle module linkml.generators.common.type_designators module linkml.generators.csvgen module linkml.generators.jsonldgen module linkml.generators.pydanticgen.array module linkml.generators.pydanticgen.template module linkml.generators.rdfgen module linkml.generators.yumlgen module linkml.utils module linkml.utils.converter module linkml.utils.datautils module linkml.utils.datavalidator module linkml.utils.deprecation module linkml.utils.execute_tutorial module linkml.utils.generator module linkml.utils.helpers module linkml.utils.mergeutils module linkml.utils.rawloader module linkml.utils.schemaloader module linkml.utils.schemasynopsis module linkml.utils.typereferences module linkml.utils.validation module linkml.validator module linkml.validator.loaders module linkml.validator.plugins module LinkmlGenerator (class in linkml.generators.linkmlgen) list_elements_ordered (linkml_runtime.linkml_model.meta.SlotDefinition attribute) list_elements_unique (linkml_runtime.linkml_model.meta.SlotDefinition attribute) ListOfListsArray (class in linkml.generators.pydanticgen.array) load() (linkml.utils.sqlutils.SQLStore method) (linkml_runtime.loaders.CSVLoader method) (linkml_runtime.loaders.JSONLoader method) (linkml_runtime.loaders.RDFLibLoader method) (linkml_runtime.loaders.YAMLLoader method) load_any() (linkml_runtime.loaders.CSVLoader method) (linkml_runtime.loaders.JSONLoader method) (linkml_runtime.loaders.RDFLibLoader method) (linkml_runtime.loaders.YAMLLoader method) load_image (linkml.generators.yumlgen.YumlGenerator attribute) load_import() (linkml_runtime.utils.schemaview.SchemaView method) load_raw_schema() (in module linkml.utils.rawloader) Loader (class in linkml.validator.loaders) loads() (linkml_runtime.loaders.CSVLoader method) (linkml_runtime.loaders.JSONLoader method) (linkml_runtime.loaders.RDFLibLoader method) (linkml_runtime.loaders.YAMLLoader method) loads_any() (linkml_runtime.loaders.CSVLoader method) (linkml_runtime.loaders.JSONLoader method) (linkml_runtime.loaders.RDFLibLoader method) (linkml_runtime.loaders.YAMLLoader method) local (linkml.utils.deprecation.SemVer attribute) locally_reflexive (linkml_runtime.linkml_model.meta.SlotDefinition attribute) log_level (linkml.utils.generator.Generator attribute) logger (linkml.utils.generator.Generator attribute) logger_warning() (linkml.utils.schemaloader.SchemaLoader method)

M

major (linkml.utils.deprecation.SemVer attribute) make() (linkml.generators.pydanticgen.array.ArrayRangeGenerator method) (linkml.generators.pydanticgen.array.NumpydanticArray method) mappings (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) MarkdownGenerator (class in linkml.generators.markdowngen) matches (linkml_runtime.linkml_model.meta.EnumDefinition attribute) materialize_attributes (linkml.generators.linkmlgen.LinkmlGenerator attribute) materialize_classes() (linkml.generators.linkmlgen.LinkmlGenerator method) materialize_derived_schema() (linkml_runtime.utils.schemaview.SchemaView method) materialize_patterns (linkml.generators.linkmlgen.LinkmlGenerator attribute) materialize_patterns() (linkml_runtime.utils.schemaview.SchemaView method) maximum_cardinality (built-in variable) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) maximum_number_dimensions (built-in variable) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) maximum_value (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) merge() (linkml.generators.common.build.BuildResult method) (linkml.generators.common.build.SchemaResult method) (linkml.generators.pydanticgen.template.Import method) merge_class() (linkml.utils.schemaloader.SchemaLoader method) merge_classes() (in module linkml.utils.mergeutils) merge_dicts() (in module linkml.utils.mergeutils) merge_enum() (linkml.utils.schemaloader.SchemaLoader method) merge_enums() (in module linkml.utils.mergeutils) merge_imports() (linkml_runtime.utils.schemaview.SchemaView method) merge_namespaces() (in module linkml.utils.mergeutils) merge_schema() (linkml_runtime.utils.schemaview.SchemaView method) merge_schemas() (in module linkml.utils.mergeutils) merge_slot() (linkml.utils.schemaloader.SchemaLoader method) merge_slots() (in module linkml.utils.mergeutils) merge_type() (linkml.utils.schemaloader.SchemaLoader method) mergeimports (linkml.utils.generator.Generator attribute) message (linkml.utils.deprecation.Deprecation attribute) meta (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml.generators.pydanticgen.template.PydanticModule attribute) meta_exclude (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml.generators.pydanticgen.template.PydanticTemplateModel attribute) metadata (linkml.utils.generator.Generator attribute) metadata_mode (linkml.generators.pydanticgen.PydanticGenerator attribute) metamodel (linkml.utils.generator.Generator attribute) metamodel_name_map (linkml.utils.generator.Generator attribute) metamodel_version (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) MIN_NUMPYDANTIC_VERSION (linkml.generators.pydanticgen.array.NumpydanticArray attribute) minimum_cardinality (built-in variable) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) minimum_number_dimensions (built-in variable) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) minimum_value (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute)

minor (linkml.utils.deprecation.SemVer attribute) minus (linkml_runtime.linkml_model.meta.EnumDefinition attribute) MissingRequiredField() (linkml_runtime.linkml_model.meta.SchemaDefinition method) mixinrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) mixins (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) model_config (linkml.generators.common.build.BuildResult attribute) (linkml.generators.common.build.ClassResult attribute) (linkml.generators.common.build.EnumResult attribute) (linkml.generators.common.build.RangeResult attribute) (linkml.generators.common.build.SchemaResult attribute) (linkml.generators.common.build.SlotResult attribute) (linkml.generators.common.build.TypeResult attribute) (linkml.generators.pydanticgen.template.ConditionalImport attribute) (linkml.generators.pydanticgen.template.EnumValue attribute) (linkml.generators.pydanticgen.template.Import attribute) (linkml.generators.pydanticgen.template.Imports attribute) (linkml.generators.pydanticgen.template.ObjectImport attribute) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml.generators.pydanticgen.template.PydanticEnum attribute) (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml.generators.pydanticgen.template.PydanticTemplateModel attribute) (linkml.generators.pydanticgen.template.PydanticValidator attribute) modified_by (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) module linkml.generators.common linkml.generators.common.build linkml.generators.common.lifecycle linkml.generators.common.type_designators linkml.generators.csvgen linkml.generators.jsonldgen linkml.generators.pydanticgen.array linkml.generators.pydanticgen.template linkml.generators.rdfgen linkml.generators.yumlgen linkml.utils linkml.utils.converter linkml.utils.datautils linkml.utils.datavalidator linkml.utils.deprecation linkml.utils.execute_tutorial linkml.utils.generator linkml.utils.helpers linkml.utils.mergeutils linkml.utils.rawloader linkml.utils.schemaloader linkml.utils.schemasynopsis linkml.utils.typereferences linkml.utils.validation linkml.validator linkml.validator.loaders linkml.validator.plugins module (linkml.generators.pydanticgen.template.Import attribute) mrf() (in module linkml.utils.rawloader) multivalued (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute)

N

name (linkml.generators.pydanticgen.template.ObjectImport attribute) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml.generators.pydanticgen.template.PydanticEnum attribute) (linkml.utils.deprecation.Deprecation attribute) (linkml.utils.schema_builder.SchemaBuilder attribute) (linkml.utils.typereferences.RefType attribute) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.EnumDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute)

namespaces (linkml.utils.generator.Generator attribute) narrow_mappings (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) ndarray_annotation() (linkml.generators.pydanticgen.array.NumpydanticArray static method) neighborhood() (linkml.utils.generator.Generator method) none_of (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) notes (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) NumpydanticArray (class in linkml.generators.pydanticgen.array)

O

obj_for() (linkml.utils.generator.Generator method) ObjectImport (class in linkml.generators.pydanticgen.template) objects (linkml.generators.pydanticgen.template.Import attribute) ordered() (linkml_runtime.utils.schemaview.SchemaView method) original_schema (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) output (linkml.utils.execute_tutorial.Block attribute) (linkml.utils.generator.Generator attribute)

output_file_name (linkml.generators.yumlgen.YumlGenerator attribute) OwlSchemaGenerator (class in linkml.generators.owlgen) own_slot_names() (linkml.utils.generator.Generator method) own_slots() (linkml.utils.generator.Generator method) owner (linkml_runtime.linkml_model.meta.SlotDefinition attribute) owners (linkml.utils.schemasynopsis.SchemaSynopsis attribute) ownslots (linkml.utils.schemasynopsis.SchemaSynopsis attribute)

P

parent() (linkml.utils.generator.Generator method) parse_file_to_blocks() (in module linkml.utils.execute_tutorial) patch (linkml.utils.deprecation.SemVer attribute) path_rule (linkml_runtime.linkml_model.meta.SlotDefinition attribute) pattern (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) permissible_value_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) permissible_value_descendants() (linkml_runtime.utils.schemaview.SchemaView method) permissible_value_parent() (linkml_runtime.utils.schemaview.SchemaView method) permissible_values (linkml_runtime.linkml_model.meta.EnumDefinition attribute) Policy (class in linkml_runtime.utils.inference_utils) post (linkml.utils.deprecation.SemVer attribute) post_l (linkml.utils.deprecation.SemVer attribute) post_n1 (linkml.utils.deprecation.SemVer attribute) post_n2 (linkml.utils.deprecation.SemVer attribute) pre (linkml.utils.deprecation.SemVer attribute) pre_l (linkml.utils.deprecation.SemVer attribute) pre_n (linkml.utils.deprecation.SemVer attribute) predefined (linkml.generators.pydanticgen.template.PydanticAttribute attribute)

predefined_slot_values (linkml.generators.pydanticgen.PydanticGenerator property) prefixes (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) prior_lines (linkml.utils.execute_tutorial.Block attribute) process_slot_usage_definitions() (linkml.utils.schemaloader.SchemaLoader method) process_slot_usages() (linkml.utils.schemaloader.SchemaLoader method) ProjectGenerator (class in linkml.generators.projectgen) prop_modifier() (linkml.generators.yumlgen.YumlGenerator method) ProtoGenerator (class in linkml.generators.protogen) pv_formula (linkml_runtime.linkml_model.meta.EnumDefinition attribute) PydanticAttribute (class in linkml.generators.pydanticgen.template) PydanticBaseModel (class in linkml.generators.pydanticgen.template) PydanticClass (class in linkml.generators.pydanticgen.template) PydanticEnum (class in linkml.generators.pydanticgen.template) PydanticGenerator (class in linkml.generators.pydanticgen) PydanticModule (class in linkml.generators.pydanticgen.template) PydanticTemplateModel (class in linkml.generators.pydanticgen.template) PydanticValidationPlugin (class in linkml.validator.plugins) PydanticValidator (class in linkml.generators.pydanticgen.template) python_imports (linkml.generators.pydanticgen.template.PydanticModule attribute) PythonGenerator (class in linkml.generators.pythongen)

R

raise_value_error() (linkml.utils.schemaloader.SchemaLoader static method) raise_value_errors() (linkml.utils.schemaloader.SchemaLoader static method) range (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) range_expression (linkml_runtime.linkml_model.meta.SlotDefinition attribute) range_type_path() (linkml.utils.generator.Generator method) rangerefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) RangeResult (class in linkml.generators.common.build) rank (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) RDFGenerator (class in linkml.generators.rdfgen) RDFLibDumper (class in linkml_runtime.dumpers) RDFLibLoader (class in linkml_runtime.loaders) reachable_from (linkml_runtime.linkml_model.meta.EnumDefinition attribute) readonly (linkml_runtime.linkml_model.meta.SlotDefinition attribute) recommendation (linkml.utils.deprecation.Deprecation attribute) recommended (linkml_runtime.linkml_model.meta.SlotDefinition attribute) RecommendedSlotsPlugin (class in linkml.validator.plugins) referenced (linkml.generators.yumlgen.YumlGenerator attribute) References (class in linkml.utils.typereferences) reflexive (linkml_runtime.linkml_model.meta.SlotDefinition attribute) reflexive_transitive_form_of (linkml_runtime.linkml_model.meta.SlotDefinition attribute) RefType (class in linkml.utils.typereferences)

related_mappings (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) relational_role (linkml_runtime.linkml_model.meta.SlotDefinition attribute) remove_duplicates() (in module linkml.utils.helpers) removed (linkml.utils.deprecation.Deprecation property) removed_in (linkml.utils.deprecation.Deprecation attribute) render() (linkml.generators.pydanticgen.PydanticGenerator method) (linkml.generators.pydanticgen.template.Imports method) (linkml.generators.pydanticgen.template.PydanticTemplateModel method) render_sorted (linkml.generators.pydanticgen.template.Imports attribute) repr (linkml_runtime.linkml_model.meta.TypeDefinition attribute) represents_relationship (linkml_runtime.linkml_model.meta.ClassDefinition attribute) required (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) requires_metamodel (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.linkmlgen.LinkmlGenerator attribute) (linkml.utils.generator.Generator attribute) resolve() (linkml.utils.schemaloader.SchemaLoader method) resolve_merged_imports() (in module linkml.utils.mergeutils) role (linkml_runtime.linkml_model.meta.SlotDefinition attribute) roots (linkml.utils.schemasynopsis.SchemaSynopsis attribute) rules (linkml_runtime.linkml_model.meta.ClassDefinition attribute)

S

SCHEMA linkml-lint command line option, [1] schema (linkml.utils.datavalidator.DataValidator attribute) (linkml.utils.generator.Generator attribute) (linkml.utils.schema_builder.SchemaBuilder attribute) (linkml.utils.schemasynopsis.SchemaSynopsis attribute) schema_errors() (linkml.utils.schemaloader.SchemaLoader method) SchemaBuilder (class in linkml.utils.schema_builder) SchemaDefinition (class in linkml_runtime.linkml_model.meta) SchemaLoader (class in linkml.utils.schemaloader) SchemaResult (class in linkml.generators.common.build) SchemaSynopsis (class in linkml.utils.schemasynopsis) SchemaView (class in linkml_runtime.utils.schemaview) schemaview (linkml.utils.generator.Generator attribute) see_also (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) SemVer (class in linkml.utils.deprecation) sep (linkml.generators.csvgen.CsvGenerator attribute) serialize() (linkml.generators.docgen.DocGenerator method) (linkml.generators.erdiagramgen.ERDiagramGenerator method) (linkml.generators.graphqlgen.GraphqlGenerator method) (linkml.generators.javagen.JavaGenerator method) (linkml.generators.jsonldcontextgen.ContextGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.linkmlgen.LinkmlGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.generators.protogen.ProtoGenerator method) (linkml.generators.pydanticgen.PydanticGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.generators.shaclgen.ShaclGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.sparqlgen.SparqlGenerator method) (linkml.generators.sqlalchemygen.SQLAlchemyGenerator method) (linkml.generators.sqltablegen.SQLTableGenerator method) (linkml.generators.terminusdbgen.TerminusdbGenerator method) (linkml.generators.typescriptgen.TypescriptGenerator method) (linkml.generators.yamlgen.YAMLGenerator method) (linkml.utils.generator.Generator method) serialize_classes() (linkml.generators.erdiagramgen.ERDiagramGenerator method) set_from_schema() (in module linkml.utils.mergeutils) set_slot() (linkml.utils.schema_builder.SchemaBuilder method) settings (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) ShaclGenerator (class in linkml.generators.shaclgen) shared (linkml_runtime.linkml_model.meta.SlotDefinition attribute) shared_arguments() (in module linkml.utils.generator) ShExGenerator (class in linkml.generators.shexgen) singular_name (linkml_runtime.linkml_model.meta.SlotDefinition attribute) SkipValidation (class in linkml.generators.common.build) slot_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) slot_applicable_range_elements() (linkml_runtime.utils.schemaview.SchemaView method) slot_children() (linkml_runtime.utils.schemaview.SchemaView method) slot_conditions (linkml_runtime.linkml_model.meta.ClassDefinition attribute) slot_definition_for() (linkml.utils.schemaloader.SchemaLoader method) slot_descendants() (linkml_runtime.utils.schemaview.SchemaView method) slot_for() (linkml.utils.generator.Generator method) slot_group (linkml_runtime.linkml_model.meta.SlotDefinition attribute) slot_is_true_for_metadata_property() (linkml_runtime.utils.schemaview.SchemaView method) slot_leaves() (linkml_runtime.utils.schemaview.SchemaView method) slot_name() (linkml.utils.generator.Generator method) slot_name_for() (linkml.utils.schemaloader.SchemaLoader static method) slot_name_mappings() (linkml_runtime.utils.schemaview.SchemaView method)

slot_names_unique (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) slot_parents() (linkml_runtime.utils.schemaview.SchemaView method) slot_range_as_union() (linkml_runtime.utils.schemaview.SchemaView method) slot_range_path() (linkml.utils.generator.Generator method) slot_roots() (linkml_runtime.utils.schemaview.SchemaView method) slot_uri (linkml_runtime.linkml_model.meta.SlotDefinition attribute) slot_usage (linkml_runtime.linkml_model.meta.ClassDefinition attribute) slot_usage_name() (in module linkml.utils.mergeutils) slotclasses (linkml.utils.schemasynopsis.SchemaSynopsis attribute) SlotDefinition (class in linkml_runtime.linkml_model.meta) slotrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) SlotResult (class in linkml.generators.common.build) slots (linkml.generators.pydanticgen.template.PydanticClass property) (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) slotusages (linkml.utils.schemasynopsis.SchemaSynopsis attribute) SNAKE_CASE (linkml.generators.pydanticgen.PydanticGenerator attribute) sort() (linkml.generators.pydanticgen.template.ConditionalImport method) (linkml.generators.pydanticgen.template.Import method) (linkml.generators.pydanticgen.template.Imports method) sort_class_slots (linkml.utils.generator.Generator attribute) sort_classes() (linkml.generators.pydanticgen.PydanticGenerator static method) sort_imports (linkml.generators.pydanticgen.PydanticGenerator attribute) source (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) source_file (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) source_file_date (linkml.utils.generator.Generator attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) source_file_size (linkml.utils.generator.Generator attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) SparqlGenerator (class in linkml.generators.sparqlgen) split (linkml.generators.pydanticgen.PydanticGenerator attribute) split_context (linkml.generators.pydanticgen.PydanticGenerator attribute) split_mode (linkml.generators.pydanticgen.PydanticGenerator attribute) split_pattern (linkml.generators.pydanticgen.PydanticGenerator attribute) SQLAlchemyGenerator (class in linkml.generators.sqlalchemygen) SQLStore (class in linkml.utils.sqlutils) SQLTableGenerator (class in linkml.generators.sqltablegen) stacktrace (linkml.utils.generator.Generator attribute) status (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) strict (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) structured_aliases (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) structured_pattern (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) subclass_of (linkml_runtime.linkml_model.meta.ClassDefinition attribute) subproperty_of (linkml_runtime.linkml_model.meta.SlotDefinition attribute) subset_for() (linkml.utils.generator.Generator method) subset_name() (linkml.utils.generator.Generator method) subsetrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) subsets (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) summarize_class_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_element() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_enum_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_slot_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_type_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summary() (linkml.utils.schemasynopsis.SchemaSynopsis method) symmetric (linkml_runtime.linkml_model.meta.SlotDefinition attribute)

T

template (linkml.generators.pydanticgen.template.ConditionalImport attribute) (linkml.generators.pydanticgen.template.Import attribute) (linkml.generators.pydanticgen.template.Imports attribute) (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.generators.pydanticgen.template.PydanticBaseModel attribute) (linkml.generators.pydanticgen.template.PydanticClass attribute) (linkml.generators.pydanticgen.template.PydanticEnum attribute) (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml.generators.pydanticgen.template.PydanticTemplateModel attribute) (linkml.generators.pydanticgen.template.PydanticValidator attribute) template_dir (linkml.generators.pydanticgen.PydanticGenerator attribute) TerminusdbGenerator (class in linkml.generators.terminusdbgen) title (linkml.generators.pydanticgen.template.PydanticAttribute attribute) (linkml.utils.execute_tutorial.Block attribute) (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) to_sqla() (linkml.utils.sqlutils.SQLStore method)

todos (linkml_runtime.linkml_model.meta.ArrayExpression attribute) (linkml_runtime.linkml_model.meta.DimensionExpression attribute) transitive (linkml_runtime.linkml_model.meta.SlotDefinition attribute) transitive_form_of (linkml_runtime.linkml_model.meta.SlotDefinition attribute) tree_root (linkml_runtime.linkml_model.meta.ClassDefinition attribute) TsvLoader (class in linkml.validator.loaders) type_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) type_mappings (linkml_runtime.linkml_model.meta.SlotDefinition attribute) type_parents() (linkml_runtime.utils.schemaview.SchemaView method) typebases (linkml.utils.schemasynopsis.SchemaSynopsis attribute) TypeDefinition (class in linkml_runtime.linkml_model.meta) typeof (linkml_runtime.linkml_model.meta.TypeDefinition attribute) typeofs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) typerefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) TypeResult (class in linkml.generators.common.build) types (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) TypescriptGenerator (class in linkml.generators.typescriptgen)

U

union_of (linkml_runtime.linkml_model.meta.ClassDefinition attribute) (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) unique_keys (linkml_runtime.linkml_model.meta.ClassDefinition attribute) unit (linkml_runtime.linkml_model.meta.SlotDefinition attribute) (linkml_runtime.linkml_model.meta.TypeDefinition attribute) update() (linkml.utils.typereferences.References method) uri (linkml_runtime.linkml_model.meta.TypeDefinition attribute)

usage_index() (linkml_runtime.utils.schemaview.SchemaView method) usage_slot_name (linkml_runtime.linkml_model.meta.SlotDefinition attribute) use_memory (linkml.utils.sqlutils.SQLStore attribute) uses_schemaloader (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.linkmlgen.LinkmlGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.utils.generator.Generator attribute) useuris (linkml.utils.generator.Generator attribute)

V

valid_formats (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.linkmlgen.LinkmlGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) validate() (in module linkml.validator) (linkml.generators.pydanticgen.array.ArrayRangeGenerator method) (linkml.generators.pydanticgen.array.ArrayValidator class method) (linkml.validator.Validator method) validate_dict() (linkml.utils.datavalidator.DataValidator method) validate_dimension() (linkml.generators.pydanticgen.array.ArrayValidator class method) validate_file() (in module linkml.validator) validate_item_names() (linkml.utils.schemaloader.SchemaLoader method) validate_object() (in module linkml.utils.validation) validate_source() (linkml.validator.Validator method) ValidationPlugin (class in linkml.validator.plugins) Validator (class in linkml.validator) validators (linkml.generators.pydanticgen.template.PydanticClass property) value (linkml.generators.pydanticgen.template.EnumValue attribute) value_presence (linkml_runtime.linkml_model.meta.SlotDefinition attribute)

values (linkml.generators.pydanticgen.template.PydanticEnum attribute) verbose (linkml.utils.generator.Generator attribute) version (linkml.generators.pydanticgen.template.PydanticModule attribute) (linkml_runtime.linkml_model.meta.SchemaDefinition attribute) visit_all_class_slots (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) visit_class() (linkml.generators.csvgen.CsvGenerator method) (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.utils.generator.Generator method) visit_class_slot() (linkml.utils.generator.Generator method) visit_enum() (linkml.utils.generator.Generator method) visit_schema() (linkml.generators.csvgen.CsvGenerator method) (linkml.generators.yumlgen.YumlGenerator method) (linkml.utils.generator.Generator method) visit_slot() (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.utils.generator.Generator method) visit_subset() (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.utils.generator.Generator method) visit_type() (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.utils.generator.Generator method) visits_are_sorted (linkml.utils.generator.Generator attribute)

W

warn() (linkml.utils.deprecation.Deprecation method) write_lines() (in module linkml.utils.execute_tutorial)

write_to_file() (in module linkml.utils.helpers) writer (linkml.generators.csvgen.CsvGenerator attribute)

Y

YAMLDumper (class in linkml_runtime.dumpers) YAMLFILE gen-csv command line option gen-doc command line option gen-erdiagram command line option gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld command line option gen-jsonld-context command line option gen-linkml command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-rdf command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqla command line option gen-sqltables command line option gen-sssom command line option gen-terminusdb command line option gen-typescript command line option linkml-generate-(full)-cli command line option linkml-generate-(full)-csv command line option linkml-generate-(full)-doc command line option linkml-generate-(full)-erdiagram command line option linkml-generate-(full)-excel command line option linkml-generate-(full)-golang command line option linkml-generate-(full)-golr-views command line option linkml-generate-(full)-graphql command line option linkml-generate-(full)-graphviz command line option linkml-generate-(full)-java command line option linkml-generate-(full)-json-schema command line option linkml-generate-(full)-jsonld command line option linkml-generate-(full)-jsonld-context command line option linkml-generate-(full)-linkml command line option linkml-generate-(full)-markdown command line option linkml-generate-(full)-namespaces command line option linkml-generate-(full)-owl command line option linkml-generate-(full)-plantuml command line option linkml-generate-(full)-prefix-map command line option linkml-generate-(full)-project command line option linkml-generate-(full)-proto command line option linkml-generate-(full)-pydantic command line option linkml-generate-(full)-python command line option linkml-generate-(full)-rdf command line option linkml-generate-(full)-shacl command line option linkml-generate-(full)-shex command line option linkml-generate-(full)-sparql command line option linkml-generate-(full)-sqla command line option linkml-generate-(full)-sqltables command line option linkml-generate-(full)-sssom command line option linkml-generate-(full)-summary command line option linkml-generate-(full)-terminusdb command line option linkml-generate-(full)-yaml command line option linkml-generate-(full)-yuml command line option

YAMLGenerator (class in linkml.generators.yamlgen) YamlLoader (class in linkml.validator.loaders) YAMLLoader (class in linkml_runtime.loaders) YumlGenerator (class in linkml.generators.yumlgen)