Index

Symbols

--add-ols-annotations gen-owl command line option --base gen-jsonld-context command line option gen-prefix-map command line option --classes gen-markdown command line option --classvars gen-python command line option --closed gen-json-schema command line option --config-file gen-project command line option --context linkml-convert command line option --csv-field-size-limit linkml-sqldb command line option --declarative gen-sqlddl command line option --dialect gen-sqlddl command line option --dir gen-markdown command line option gen-project command line option gen-sparql command line option --direct-mapping gen-sqlddl command line option --exclude gen-project command line option --flatprefixes gen-jsonld-context command line option --format gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option --generate-classes gen-sqlddl command line option --generate-records gen-java command line option --generator-arguments gen-project command line option --genmeta gen-python command line option --head gen-python command line option --img gen-markdown command line option --importmap gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option --include gen-project command line option --include-range-class-descendants gen-json-schema command line option --index-file gen-markdown command line option --index-slot linkml-convert command line option --infer linkml-convert command line option --inline gen-json-schema command line option --input-format linkml-convert command line option --log_level gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option --map-fields gen-markdown command line option --mergeimports gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option --metaclasses gen-owl command line option --metadata gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option --metadata-profile gen-owl command line option --metauris gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option --model gen-jsonld-context command line option --module linkml-convert command line option --no-add-ols-annotations gen-owl command line option --no-classvars gen-python command line option --no-declarative gen-sqlddl command line option --no-direct-mapping gen-sqlddl command line option --no-flatprefixes gen-jsonld-context command line option --no-generate-classes gen-sqlddl command line option --no-generate-records gen-java command line option --no-genmeta gen-python command line option --no-head gen-python command line option --no-infer linkml-convert command line option --no-mergeimports gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option --no-metaclasses gen-owl command line option --no-metadata gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option

--no-model gen-jsonld-context command line option --no-prefixes gen-jsonld-context command line option --no-pydantic gen-sqlddl command line option --no-range-class-descendants gen-json-schema command line option --no-slots gen-python command line option --no-target-class-from-path linkml-convert command line option --no-type-objects gen-owl command line option --no-use-foreign-keys gen-sqlddl command line option, [1] --no-validate linkml-convert command line option --noimages gen-markdown command line option --not-closed gen-json-schema command line option --notypesdir gen-markdown command line option --noyuml gen-markdown command line option --ontology-uri-suffix gen-owl command line option --output gen-excel command line option gen-owl command line option gen-prefix-map command line option gen-shex command line option gen-sssom command line option linkml-convert command line option --output-directory gen-java command line option --output-format linkml-convert command line option --package gen-java command line option --prefix linkml-convert command line option --prefixes gen-jsonld-context command line option --pydantic gen-sqlddl command line option --python-import gen-sqlddl command line option --quiet linkml-sqldb command line option --schema linkml-convert command line option --slots gen-python command line option --sqla-file gen-sqlddl command line option --target-class linkml-convert command line option --target-class-from-path linkml-convert command line option --template-file gen-java command line option --template_file gen-pydantic command line option --top-class gen-json-schema command line option --type-objects gen-owl command line option --use-foreign-keys gen-sqlddl command line option, [1] --useuris gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option --validate linkml-convert command line option --verbose gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option linkml-sqldb command line option --warnonexist gen-markdown command line option -A gen-project command line option -C gen-project command line option linkml-convert command line option -c gen-markdown command line option linkml-convert command line option -d gen-markdown command line option gen-project command line option gen-sparql command line option -f gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option linkml-convert command line option -I gen-markdown command line option gen-project command line option -i gen-json-schema command line option gen-markdown command line option -im gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option -M gen-markdown command line option -m linkml-convert command line option -o gen-excel command line option gen-owl command line option gen-prefix-map command line option gen-shex command line option gen-sssom command line option linkml-convert command line option -P linkml-convert command line option -q linkml-sqldb command line option -S linkml-convert command line option -s linkml-convert command line option -t gen-json-schema command line option linkml-convert command line option -v gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option linkml-sqldb command line option -X gen-project command line option

A

abstract (linkml.generators.oocodegen.OOClass attribute) abstracts (linkml.utils.schemasynopsis.SchemaSynopsis attribute) add_class() (linkml_runtime.utils.schemaview.SchemaView method) add_column() (linkml.generators.sqlddlgen.SQLTable method) add_enum() (linkml_runtime.utils.schemaview.SchemaView method) add_id_prefixes() (linkml.utils.generator.Generator method) add_mappings() (linkml.utils.generator.Generator method) add_metadata() (linkml.generators.owlgen.OwlSchemaGenerator method) add_ols_annotations (linkml.generators.owlgen.OwlSchemaGenerator attribute) add_prefix() (linkml.utils.generator.Generator method) add_ref() (linkml.utils.schemasynopsis.SchemaSynopsis method) add_slot() (linkml_runtime.utils.schemaview.SchemaView method) add_subset() (linkml_runtime.utils.schemaview.SchemaView method) add_table() (linkml.generators.sqlddlgen.SQLSchema method) add_type() (linkml_runtime.utils.schemaview.SchemaView method) addref() (linkml.utils.typereferences.References method) adjust_slot() (linkml.generators.jsonldgen.JSONLDGenerator method) alias_root() (in module linkml.utils.mergeutils) aliased_slot_name() (linkml.utils.generator.Generator method) all_class() (linkml_runtime.utils.schemaview.SchemaView method) all_classes() (linkml_runtime.utils.schemaview.SchemaView method) all_columns() (linkml.generators.sqlddlgen.SQLSchema method) all_element() (linkml_runtime.utils.schemaview.SchemaView method) all_elements() (linkml_runtime.utils.schemaview.SchemaView method)

all_enum() (linkml_runtime.utils.schemaview.SchemaView method) all_enums() (linkml_runtime.utils.schemaview.SchemaView method) all_fields (linkml.generators.oocodegen.OOClass attribute) all_schema() (linkml_runtime.utils.schemaview.SchemaView method) all_slot() (linkml_runtime.utils.schemaview.SchemaView method) all_slots() (linkml.utils.generator.Generator method) (linkml_runtime.utils.schemaview.SchemaView method) all_subset() (linkml_runtime.utils.schemaview.SchemaView method) all_subsets() (linkml_runtime.utils.schemaview.SchemaView method) all_type() (linkml_runtime.utils.schemaview.SchemaView method) all_types() (linkml_runtime.utils.schemaview.SchemaView method) allow_extra (linkml.generators.pydanticgen.PydanticGenerator attribute) ancestors() (linkml.utils.generator.Generator method) anchor() (linkml.generators.markdowngen.MarkdownGenerator static method) anchorend() (linkml.generators.markdowngen.MarkdownGenerator static method) annotation_dict() (linkml_runtime.utils.schemaview.SchemaView method) annotations (linkml.generators.oocodegen.OOClass attribute) (linkml.generators.oocodegen.OOField attribute) (linkml.utils.execute_tutorial.Block attribute) applytorefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) applytos (linkml.utils.schemasynopsis.SchemaSynopsis attribute) as_ddlstr() (linkml.generators.sqlddlgen.SQLColumn method) as_graph() (linkml.generators.shaclgen.ShaclGenerator method) as_var() (linkml.generators.sqlddlgen.SQLTable method) associations_generated (linkml.generators.yumlgen.YumlGenerator attribute)

B

Backref (class in linkml.generators.sqlddlgen) backref_column (linkml.generators.sqlddlgen.Backref attribute) backrefs (linkml.generators.sqlddlgen.SQLTable attribute) base (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute)

base_dir (linkml.utils.generator.Generator attribute) base_type (linkml.generators.sqlddlgen.SQLColumn attribute) bbin() (linkml.generators.markdowngen.MarkdownGenerator method) Block (class in linkml.utils.execute_tutorial) box_generated (linkml.generators.yumlgen.YumlGenerator attribute) bullet() (linkml.generators.markdowngen.MarkdownGenerator static method)

C

cardinality (linkml.generators.golrgen.GOLRField attribute) cardinality() (linkml.generators.yumlgen.YumlGenerator static method) category (linkml.utils.execute_tutorial.Block attribute) check_prefix() (linkml.utils.schemaloader.SchemaLoader method) check_prefixes() (linkml.utils.schemaloader.SchemaLoader method) CheckResult (class in linkml.reporting.model) class class_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) class_associations() (linkml.generators.yumlgen.YumlGenerator method) class_box() (linkml.generators.yumlgen.YumlGenerator method) class_children() (linkml_runtime.utils.schemaview.SchemaView method) class_class_curie (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.Problem attribute) (linkml.reporting.model.ProblemSlotInapplicable attribute) (linkml.reporting.model.ProblemSlotMissing attribute) (linkml.reporting.model.ProblemSlotUndeclared attribute) (linkml.reporting.model.Report attribute) class_class_uri (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.Problem attribute) (linkml.reporting.model.ProblemSlotInapplicable attribute) (linkml.reporting.model.ProblemSlotMissing attribute) (linkml.reporting.model.ProblemSlotUndeclared attribute) (linkml.reporting.model.Report attribute) class_descendants() (linkml_runtime.utils.schemaview.SchemaView method) class_hier() (linkml.generators.markdowngen.MarkdownGenerator method) class_identifier() (linkml.utils.generator.Generator method) class_identifier_path() (linkml.utils.generator.Generator method) class_induced_slots() (linkml_runtime.utils.schemaview.SchemaView method) class_leaves() (linkml_runtime.utils.schemaview.SchemaView method) class_link() (linkml.generators.markdowngen.MarkdownGenerator method) class_model_uri (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.Problem attribute) (linkml.reporting.model.ProblemSlotInapplicable attribute) (linkml.reporting.model.ProblemSlotMissing attribute) (linkml.reporting.model.ProblemSlotUndeclared attribute) (linkml.reporting.model.Report attribute) class_name (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.Problem attribute) (linkml.reporting.model.ProblemSlotInapplicable attribute) (linkml.reporting.model.ProblemSlotMissing attribute) (linkml.reporting.model.ProblemSlotUndeclared attribute) (linkml.reporting.model.Report attribute)

class_name_mappings() (linkml_runtime.utils.schemaview.SchemaView method) class_obj (linkml.generators.golrgen.GolrSchemaGenerator attribute) class_or_type_for() (linkml.utils.generator.Generator method) class_or_type_name() (linkml.utils.generator.Generator method) class_parents() (linkml_runtime.utils.schemaview.SchemaView method) class_reference_type() (linkml.generators.pythongen.PythonGenerator method) class_roots() (linkml_runtime.utils.schemaview.SchemaView method) class_slots() (linkml_runtime.utils.schemaview.SchemaView method) class_type_link() (linkml.generators.markdowngen.MarkdownGenerator method) ClassDefinition (class in linkml_runtime.linkml_model.meta) classdot (linkml.generators.dotgen.DotGenerator attribute) classes (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.generators.oocodegen.OODocument attribute) (linkml.generators.yumlgen.YumlGenerator attribute) classname (linkml.generators.dotgen.DotGenerator attribute) classnames (linkml.generators.dotgen.DotGenerator attribute) classrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) classtab (linkml.generators.summarygen.SummaryGenerator attribute) closure (linkml.generators.csvgen.CsvGenerator attribute) cls_obj (linkml.generators.dotgen.DotGenerator attribute) cls_subj (linkml.generators.dotgen.DotGenerator attribute) clsobj (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) codesets (linkml.utils.schemasynopsis.SchemaSynopsis attribute) columns (linkml.generators.sqlddlgen.SQLTable attribute) compile() (linkml.utils.sqlutils.SQLStore method) compile_module() (linkml.generators.pythongen.PythonGenerator method) compile_native() (linkml.utils.sqlutils.SQLStore method) Config (class in linkml_runtime.utils.inference_utils) content (linkml.utils.execute_tutorial.Block attribute) context (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) context_body (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) ContextGenerator (class in linkml.generators.jsonldcontextgen), [1] create_documents() (linkml.generators.oocodegen.OOCodeGenerator method) CSVDumper (class in linkml_runtime.dumpers) CsvGenerator (class in linkml.generators.csvgen) CSVLoader (class in linkml_runtime.loaders) curie_for() (in module linkml.utils.ifabsent_functions)

D

DataValidator (class in linkml.utils.datavalidator) db_exists() (linkml.utils.sqlutils.SQLStore method) DDLEntity (class in linkml.generators.sqlddlgen) default_curie_or_uri() (in module linkml.utils.ifabsent_functions) default_ns (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) default_ns_for() (in module linkml.utils.ifabsent_functions) default_prefix() (linkml.utils.generator.Generator method) default_uri_for() (in module linkml.utils.ifabsent_functions) default_value (linkml.generators.oocodegen.OOField attribute) definingslots (linkml.utils.schemasynopsis.SchemaSynopsis attribute) delete_class() (linkml_runtime.utils.schemaview.SchemaView method) delete_enum() (linkml_runtime.utils.schemaview.SchemaView method) delete_slot() (linkml_runtime.utils.schemaview.SchemaView method) delete_subset() (linkml_runtime.utils.schemaview.SchemaView method) delete_type() (linkml_runtime.utils.schemaview.SchemaView method) desc_for() (linkml.generators.markdowngen.MarkdownGenerator method) description (linkml.generators.golrgen.GOLRClass attribute) (linkml.generators.golrgen.GOLRField attribute) (linkml.generators.sqlddlgen.DDLEntity attribute) dialect (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) (linkml.generators.summarygen.SummaryGenerator attribute) dir_path() (linkml.generators.markdowngen.MarkdownGenerator method) directory (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.generators.projectgen.ProjectConfiguration attribute) (linkml.generators.yumlgen.YumlGenerator attribute)

directory_output (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.utils.generator.Generator attribute) dirname (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.summarygen.SummaryGenerator attribute) display_name (linkml.generators.golrgen.GOLRClass attribute) (linkml.generators.golrgen.GOLRField attribute) document_category (linkml.generators.golrgen.GOLRClass attribute) domain_slots() (linkml.utils.generator.Generator method) DotGenerator (class in linkml.generators.dotgen) dump() (linkml.utils.sqlutils.SQLStore method) (linkml_runtime.dumpers.CSVDumper method) (linkml_runtime.dumpers.json_dumper.JSONDumper method) (linkml_runtime.dumpers.JSONDumper method) (linkml_runtime.dumpers.YAMLDumper method) dumps() (linkml_runtime.dumpers.CSVDumper method) (linkml_runtime.dumpers.json_dumper.JSONDumper method) (linkml_runtime.dumpers.JSONDumper method) (linkml_runtime.dumpers.YAMLDumper method)

E

edge() (linkml.generators.dotgen.DotGenerator method) element_header() (linkml.generators.markdowngen.MarkdownGenerator method) element_properties() (linkml.generators.markdowngen.MarkdownGenerator method) ElementDefinition (class in linkml.generators.owlgen) emit_metadata (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.namespacegen.NamespaceGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) emit_prefixes (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) (linkml.generators.shaclgen.ShaclGenerator attribute) (linkml.utils.generator.Generator attribute) empty_references() (in module linkml.utils.schemasynopsis) end_class() (linkml.generators.dotgen.DotGenerator method) (linkml.generators.golrgen.GolrSchemaGenerator method) (linkml.generators.graphqlgen.GraphqlGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.protogen.ProtoGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.sqlddlgen.SQLDDLGenerator method) (linkml.utils.generator.Generator method) end_schema() (linkml.generators.dotgen.DotGenerator method) (linkml.generators.jsonldcontextgen.ContextGenerator method) (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.generators.prefixmapgen.PrefixGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.generators.rdfgen.RDFGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.sqlddlgen.SQLDDLGenerator method) (linkml.utils.generator.Generator method)

entryProperties (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) enum enum_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) enum_dict (linkml.generators.excelgen.ExcelGenerator attribute) enum_hier() (linkml.generators.markdowngen.MarkdownGenerator method) enum_identifier_path() (linkml.utils.generator.Generator method) enum_link() (linkml.generators.markdowngen.MarkdownGenerator method) enum_parents() (linkml_runtime.utils.schemaview.SchemaView method) enumrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) ERROR (linkml.reporting.model.SeverityOptions attribute) error (linkml.utils.execute_tutorial.Block attribute) errors() (linkml.utils.schemasynopsis.SchemaSynopsis method) ExcelGenerator (class in linkml.generators.excelgen) excludes (linkml.generators.projectgen.ProjectConfiguration attribute) execute_blocks() (in module linkml.utils.execute_tutorial) exist_warning() (linkml.generators.markdowngen.MarkdownGenerator method) expand_curie() (linkml_runtime.utils.schemaview.SchemaView method) expected_fail (linkml.utils.execute_tutorial.Block attribute)

F

FATAL (linkml.reporting.model.SeverityOptions attribute) fields (linkml.generators.golrgen.GOLRClass attribute) (linkml.generators.oocodegen.OOClass attribute) filedot (linkml.generators.dotgen.DotGenerator attribute) filename (linkml.generators.dotgen.DotGenerator attribute) filtered_cls_slots() (linkml.generators.yumlgen.YumlGenerator method) flatprefixes (linkml.generators.jsonldcontextgen.ContextGenerator attribute)

focus_classes (linkml.generators.yumlgen.YumlGenerator attribute) foreign_key (linkml.generators.sqlddlgen.SQLColumn attribute) format (linkml.utils.generator.Generator attribute) formatted_element_name() (linkml.utils.generator.Generator method) forward_reference() (linkml.generators.pythongen.PythonGenerator method) from_sqla() (linkml.utils.sqlutils.SQLStore method) frontmatter() (linkml.generators.markdowngen.MarkdownGenerator method)

G

gen-excel command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --output --useuris --verbose -f -im -o -v YAMLFILE gen-graphql command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --useuris --verbose -f -im -v YAMLFILE gen-java command line option --format --generate-records --importmap --log_level --mergeimports --metadata --metauris --no-generate-records --no-mergeimports --no-metadata --output-directory --package --template-file --useuris --verbose -f -im -v YAMLFILE gen-json-schema command line option --closed --format --importmap --include-range-class-descendants --inline --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --no-range-class-descendants --not-closed --top-class --useuris --verbose -f -i -im -t -v YAMLFILE gen-jsonld-context command line option --base --flatprefixes --format --importmap --log_level --mergeimports --metadata --metauris --model --no-flatprefixes --no-mergeimports --no-metadata --no-model --no-prefixes --prefixes --useuris --verbose -f -im -v YAMLFILE gen-markdown command line option --classes --dir --format --img --importmap --index-file --log_level --map-fields --mergeimports --metadata --metauris --no-mergeimports --no-metadata --noimages --notypesdir --noyuml --useuris --verbose --warnonexist -c -d -f -i -I -im -M -v YAMLFILE gen-owl command line option --add-ols-annotations --format --importmap --log_level --mergeimports --metaclasses --metadata --metadata-profile --metauris --no-add-ols-annotations --no-mergeimports --no-metaclasses --no-metadata --no-type-objects --ontology-uri-suffix --output --type-objects --useuris --verbose -f -im -o -v YAMLFILE gen-prefix-map command line option --base --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --output --useuris --verbose -f -im -o -v YAMLFILE gen-project command line option --config-file --dir --exclude --generator-arguments --include --mergeimports --no-mergeimports -A -C -d -I -X YAMLFILE gen-proto command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --useuris --verbose -f -im -v YAMLFILE gen-pydantic command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --template_file --useuris --verbose -f -im -v YAMLFILE gen-python command line option --classvars --format --genmeta --head --importmap --log_level --mergeimports --metadata --metauris --no-classvars --no-genmeta --no-head --no-mergeimports --no-metadata --no-slots --slots --useuris --verbose -f -im -v YAMLFILE gen-shacl command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --useuris --verbose -f -im -v YAMLFILE

gen-shex command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --output --useuris --verbose -f -im -o -v YAMLFILE gen-sparql command line option --dir --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --useuris --verbose -d -f -im -v YAMLFILE gen-sqlddl command line option --declarative --dialect --direct-mapping --format, [1] --generate-classes --importmap, [1] --log_level, [1] --mergeimports, [1] --metadata, [1] --metauris, [1] --no-declarative --no-direct-mapping --no-generate-classes --no-mergeimports, [1] --no-metadata, [1] --no-pydantic --no-use-foreign-keys, [1] --pydantic --python-import --sqla-file --use-foreign-keys, [1] --useuris, [1] --verbose, [1] -f, [1] -im, [1] -v, [1] YAMLFILE, [1] gen-sssom command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --output --useuris --verbose -f -im -o -v YAMLFILE gen-typescript command line option --format --importmap --log_level --mergeimports --metadata --metauris --no-mergeimports --no-metadata --useuris --verbose -f -im -v YAMLFILE gen_class_meta() (linkml.generators.pythongen.PythonGenerator method) gen_class_reference() (linkml.generators.pythongen.PythonGenerator static method) gen_class_variable() (linkml.generators.pythongen.PythonGenerator method) gen_class_variables() (linkml.generators.pythongen.PythonGenerator method) gen_classdef() (linkml.generators.pythongen.PythonGenerator method) gen_classdefs() (linkml.generators.pythongen.PythonGenerator method) gen_classes (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) gen_classes_neighborhood (linkml.generators.markdowngen.MarkdownGenerator attribute) gen_classvars (linkml.generators.namespacegen.NamespaceGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) gen_enum() (linkml.generators.pythongen.PythonGenerator method) gen_enum_comment() (linkml.generators.pythongen.PythonGenerator method) gen_enum_definition() (linkml.generators.pythongen.PythonGenerator method) gen_enum_description() (linkml.generators.pythongen.PythonGenerator method) gen_enumerations() (linkml.generators.pythongen.PythonGenerator method) gen_import_list() (linkml.generators.pythongen.PythonGenerator method) gen_imports() (linkml.generators.pythongen.PythonGenerator method) gen_inherited_slots() (linkml.generators.pythongen.PythonGenerator method) gen_mixin_inheritance (linkml.generators.pydanticgen.PydanticGenerator attribute) gen_namespaces() (linkml.generators.namespacegen.NamespaceGenerator method) (linkml.generators.pythongen.PythonGenerator method) gen_postinit() (linkml.generators.pythongen.PythonGenerator method) gen_postinits() (linkml.generators.pythongen.PythonGenerator method) gen_pv_constructor() (linkml.generators.pythongen.PythonGenerator method) gen_pvs() (linkml.generators.pythongen.PythonGenerator method) gen_pvs2() (linkml.generators.pythongen.PythonGenerator method) gen_pvs2_initializers() (linkml.generators.pythongen.PythonGenerator method) gen_references() (linkml.generators.pythongen.PythonGenerator method) gen_schema() (linkml.generators.namespacegen.NamespaceGenerator method) (linkml.generators.pythongen.PythonGenerator method) gen_slot() (linkml.generators.pythongen.PythonGenerator method) gen_slotdefs() (linkml.generators.pythongen.PythonGenerator method) gen_slots (linkml.generators.namespacegen.NamespaceGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) gen_type_meta() (linkml.generators.pythongen.PythonGenerator method) gen_typedefs() (linkml.generators.pythongen.PythonGenerator method) generate() (linkml.generators.projectgen.ProjectGenerator method) generate_ddl() (linkml.generators.sqlddlgen.SQLDDLGenerator method) generate_enum_label() (linkml.generators.oocodegen.OOCodeGenerator method) generate_enums() (linkml.generators.pydanticgen.PydanticGenerator method) generate_header() (linkml.generators.csvgen.CsvGenerator method) (linkml.generators.golrgen.GolrSchemaGenerator method) (linkml.generators.graphqlgen.GraphqlGenerator method) (linkml.generators.protogen.ProtoGenerator method) (linkml.generators.shaclgen.ShaclGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.sqlddlgen.SQLDDLGenerator method) generate_records (linkml.generators.javagen.JavaGenerator attribute) generate_sparql() (linkml.generators.sparqlgen.SparqlGenerator method) generated (linkml.generators.yumlgen.YumlGenerator attribute) Generator (class in linkml.utils.generator) generator_args (linkml.generators.projectgen.ProjectConfiguration attribute) generator_name (linkml.generators.excelgen.ExcelGenerator attribute) generator_version (linkml.generators.excelgen.ExcelGenerator attribute) generatorname (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.javagen.JavaGenerator attribute) (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.generators.namespacegen.NamespaceGenerator attribute) (linkml.generators.owlgen.OwlSchemaGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) (linkml.generators.protogen.ProtoGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.shaclgen.ShaclGenerator attribute) (linkml.generators.shexgen.ShExGenerator attribute) (linkml.generators.sparqlgen.SparqlGenerator attribute) (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) (linkml.generators.summarygen.SummaryGenerator attribute) (linkml.generators.yamlgen.YAMLGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) generatorversion (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.javagen.JavaGenerator attribute) (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.generators.namespacegen.NamespaceGenerator attribute) (linkml.generators.owlgen.OwlSchemaGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) (linkml.generators.protogen.ProtoGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.shaclgen.ShaclGenerator attribute) (linkml.generators.shexgen.ShExGenerator attribute) (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) (linkml.generators.summarygen.SummaryGenerator attribute) (linkml.generators.yamlgen.YAMLGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) genmeta (linkml.generators.namespacegen.NamespaceGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) get_class() (linkml_runtime.utils.schemaview.SchemaView method) get_class_isa_plus_mixins() (linkml.generators.pydanticgen.PydanticGenerator method) get_class_name() (linkml.generators.oocodegen.OOCodeGenerator method) get_class_slot_range() (linkml.generators.pydanticgen.PydanticGenerator method) get_classes_by_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_dumper() (in module linkml.utils.datautils) get_element() (linkml_runtime.utils.schemaview.SchemaView method) get_elements_applicable_by_identifier() (linkml_runtime.utils.schemaview.SchemaView method) get_elements_applicable_by_prefix() (linkml_runtime.utils.schemaview.SchemaView method) get_enum() (linkml_runtime.utils.schemaview.SchemaView method) get_identifier_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_key_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_loader() (in module linkml.utils.datautils) get_local_imports() (in module linkml.generators.projectgen) get_mapping_index() (linkml_runtime.utils.schemaview.SchemaView method) get_mappings() (linkml_runtime.utils.schemaview.SchemaView method) get_metamodel_slot_name() (linkml.utils.generator.Generator method) get_mixin_identifier_range() (linkml.generators.pydanticgen.PydanticGenerator method) get_predefined_slot_values() (linkml.generators.pydanticgen.PydanticGenerator method) get_ref_for_descendants() (linkml.generators.jsonschemagen.JsonSchemaGenerator method) get_singular_primary_key() (linkml.generators.sqlddlgen.SQLTable method) get_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_slot_name() (linkml.generators.oocodegen.OOCodeGenerator method) get_sql_range() (linkml.generators.sqlddlgen.SQLDDLGenerator method) get_subset() (linkml_runtime.utils.schemaview.SchemaView method) get_table_by_class_name() (linkml.generators.sqlddlgen.SQLSchema method) get_type() (linkml_runtime.utils.schemaview.SchemaView method) get_type_designator_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_uri() (linkml_runtime.utils.schemaview.SchemaView method) GOLRClass (class in linkml.generators.golrgen) GOLRField (class in linkml.generators.golrgen) GolrSchemaGenerator (class in linkml.generators.golrgen) graph (linkml.generators.owlgen.OwlSchemaGenerator attribute) GraphqlGenerator (class in linkml.generators.graphqlgen)

H

header() (linkml.generators.markdowngen.MarkdownGenerator method)

I

id (linkml.generators.golrgen.GOLRClass attribute) (linkml.generators.golrgen.GOLRField attribute) id_to_url() (linkml.generators.markdowngen.MarkdownGenerator static method) ifabsent_postinit_declaration() (in module linkml.utils.ifabsent_functions) ifabsent_value_declaration() (in module linkml.utils.ifabsent_functions) image_dir (linkml.generators.markdowngen.MarkdownGenerator attribute) image_directory (linkml.generators.markdowngen.MarkdownGenerator attribute) importmap (linkml.utils.generator.Generator attribute) imports (linkml.generators.oocodegen.OODocument attribute) imports_closure() (linkml_runtime.utils.schemaview.SchemaView method) in_schema (linkml.generators.sqlddlgen.SQLTable attribute) in_schema() (linkml_runtime.utils.schemaview.SchemaView method) include_range_class_descendants (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) includes (linkml.generators.projectgen.ProjectConfiguration attribute) index_file (linkml.generators.markdowngen.MarkdownGenerator attribute) induced_class() (linkml_runtime.utils.schemaview.SchemaView method) induced_enum() (linkml_runtime.utils.schemaview.SchemaView method) induced_slot() (linkml_runtime.utils.schemaview.SchemaView method) induced_type() (linkml_runtime.utils.schemaview.SchemaView method) infer_all_slot_values() (in module linkml_runtime.utils.inference_utils) infer_index_slot() (in module linkml.utils.datautils) infer_root_class() (in module linkml.utils.datautils) infer_slot_value() (in module linkml_runtime.utils.inference_utils) info (linkml.reporting.model.CheckResult attribute) INFO (linkml.reporting.model.SeverityOptions attribute)

info (linkml.reporting.model.slots attribute) inject_primary_keys (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) inline (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) INPUT linkml-convert command line option inschema (linkml.utils.schemasynopsis.SchemaSynopsis attribute) instantiates (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) inverse() (linkml_runtime.utils.schemaview.SchemaView method) inverses (linkml.utils.schemasynopsis.SchemaSynopsis attribute) is_a (linkml.generators.oocodegen.OOClass attribute) is_bash() (linkml.utils.execute_tutorial.Block method) is_class_unconstrained() (linkml.utils.generator.Generator method) is_file_block() (linkml.utils.execute_tutorial.Block method) is_inlined() (linkml_runtime.utils.schemaview.SchemaView method) is_key_value_class() (linkml.generators.pythongen.PythonGenerator method) is_mixin() (linkml_runtime.utils.schemaview.SchemaView method) is_multivalued() (linkml_runtime.utils.schemaview.SchemaView method) is_primary_key() (linkml.generators.sqlddlgen.SQLColumn method) is_relationship() (linkml_runtime.utils.schemaview.SchemaView method) is_secondary_ref() (linkml.generators.markdowngen.MarkdownGenerator method) is_singular_primary_key (linkml.generators.sqlddlgen.SQLColumn attribute) is_slot_object_property() (linkml.generators.owlgen.OwlSchemaGenerator method) is_stdout() (linkml.utils.execute_tutorial.Block method) isabsent_match() (in module linkml.utils.ifabsent_functions) isarefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute)

J

java_style (linkml.generators.oocodegen.OOCodeGenerator attribute) JavaGenerator (class in linkml.generators.javagen), [1] JSONDumper (class in linkml_runtime.dumpers) (class in linkml_runtime.dumpers.json_dumper)

JSONLDGenerator (class in linkml.generators.jsonldgen) JSONLoader (class in linkml_runtime.loaders), [1] JsonSchemaGenerator (class in linkml.generators.jsonschemagen), [1], [2]

K

key_name_for() (linkml.generators.pythongen.PythonGenerator method)

L

limit (linkml.generators.sparqlgen.SparqlGenerator attribute) linkml module linkml (linkml.generators.owlgen.MetadataProfile attribute) linkml-convert command line option --context --index-slot --infer --input-format --module --no-infer --no-target-class-from-path --no-validate --output --output-format --prefix --schema --target-class --target-class-from-path --validate -C -c -f -m -o -P -S -s -t INPUT linkml-sqldb command line option --csv-field-size-limit --quiet --verbose -q -v linkml.generators module linkml.generators.csvgen module linkml.generators.dotgen module linkml.generators.excelgen module linkml.generators.golrgen module linkml.generators.graphqlgen module linkml.generators.javagen module linkml.generators.jsonldcontextgen module linkml.generators.jsonldgen module linkml.generators.jsonschemagen module linkml.generators.markdowngen module linkml.generators.namespacegen module linkml.generators.oocodegen module linkml.generators.owlgen module linkml.generators.prefixmapgen module linkml.generators.projectgen module linkml.generators.protogen module linkml.generators.pydanticgen module linkml.generators.pythongen module

linkml.generators.rdfgen module linkml.generators.shaclgen module linkml.generators.shexgen module linkml.generators.sparqlgen module linkml.generators.sqlddlgen module linkml.generators.summarygen module linkml.generators.yamlgen module linkml.generators.yumlgen module linkml.reporting module linkml.reporting.model module linkml.utils module linkml.utils.converter module linkml.utils.datautils module linkml.utils.datavalidator module linkml.utils.execute_tutorial module linkml.utils.generator module linkml.utils.helpers module linkml.utils.ifabsent_functions module linkml.utils.mergeutils module linkml.utils.rawloader module linkml.utils.schemaloader module linkml.utils.schemasynopsis module linkml.utils.typereferences module linkml.utils.validation module list() (linkml.generators.owlgen.MetadataProfile static method) list_shapes (linkml.generators.shexgen.ShExGenerator attribute) load() (linkml.utils.sqlutils.SQLStore method) (linkml_runtime.loaders.CSVLoader method) (linkml_runtime.loaders.JSONLoader method) (linkml_runtime.loaders.RDFLibLoader method) (linkml_runtime.loaders.YAMLLoader method) load_any() (linkml_runtime.loaders.CSVLoader method) (linkml_runtime.loaders.JSONLoader method) (linkml_runtime.loaders.RDFLibLoader method) (linkml_runtime.loaders.YAMLLoader method) load_image (linkml.generators.yumlgen.YumlGenerator attribute) load_raw_schema() (in module linkml.utils.rawloader) loads() (linkml_runtime.loaders.CSVLoader method) (linkml_runtime.loaders.JSONLoader method), [1] (linkml_runtime.loaders.RDFLibLoader method) (linkml_runtime.loaders.YAMLLoader method) loads_any() (linkml_runtime.loaders.CSVLoader method) (linkml_runtime.loaders.JSONLoader method) (linkml_runtime.loaders.RDFLibLoader method) (linkml_runtime.loaders.YAMLLoader method) log_level (linkml.utils.generator.Generator attribute) logger (linkml.utils.generator.Generator attribute) logger_warning() (linkml.utils.schemaloader.SchemaLoader method)

M

make_multivalued() (linkml.generators.oocodegen.OOCodeGenerator method) map_type() (linkml.generators.javagen.JavaGenerator method) (linkml.generators.oocodegen.OOCodeGenerator method) mapped_to (linkml.generators.sqlddlgen.SQLColumn attribute) (linkml.generators.sqlddlgen.SQLSchema attribute) (linkml.generators.sqlddlgen.SQLTable attribute) mapped_to_alias (linkml.generators.sqlddlgen.SQLColumn attribute) mappings() (linkml.generators.markdowngen.MarkdownGenerator method) MarkdownGenerator (class in linkml.generators.markdowngen), [1] materialize_patterns() (linkml_runtime.utils.schemaview.SchemaView method) materialize_schema() (in module linkml.generators.sparqlgen) merge_class() (linkml.utils.schemaloader.SchemaLoader method) merge_classes() (in module linkml.utils.mergeutils) merge_dicts() (in module linkml.utils.mergeutils) merge_enum() (linkml.utils.schemaloader.SchemaLoader method) merge_enums() (in module linkml.utils.mergeutils) merge_imports() (linkml_runtime.utils.schemaview.SchemaView method) merge_namespaces() (in module linkml.utils.mergeutils) merge_schema() (linkml_runtime.utils.schemaview.SchemaView method) merge_schemas() (in module linkml.utils.mergeutils) merge_slot() (linkml.utils.schemaloader.SchemaLoader method) merge_slots() (in module linkml.utils.mergeutils) merge_type() (linkml.utils.schemaloader.SchemaLoader method) mergeimports (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.projectgen.ProjectConfiguration attribute) (linkml.generators.shaclgen.ShaclGenerator attribute) (linkml.utils.generator.Generator attribute) metaclasses (linkml.generators.owlgen.OwlSchemaGenerator attribute) metadata (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.shaclgen.ShaclGenerator attribute) (linkml.utils.generator.Generator attribute) metadata_profile (linkml.generators.owlgen.OwlSchemaGenerator attribute) MetadataProfile (class in linkml.generators.owlgen) metamodel (linkml.utils.generator.Generator attribute) metamodel_name_map (linkml.utils.generator.Generator attribute) mixinrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) mixins (linkml.generators.oocodegen.OOClass attribute) (linkml.utils.schemasynopsis.SchemaSynopsis attribute) model (linkml.generators.jsonldcontextgen.ContextGenerator attribute) module linkml linkml.generators linkml.generators.csvgen linkml.generators.dotgen linkml.generators.excelgen linkml.generators.golrgen linkml.generators.graphqlgen linkml.generators.javagen linkml.generators.jsonldcontextgen linkml.generators.jsonldgen linkml.generators.jsonschemagen linkml.generators.markdowngen linkml.generators.namespacegen linkml.generators.oocodegen linkml.generators.owlgen linkml.generators.prefixmapgen linkml.generators.projectgen linkml.generators.protogen linkml.generators.pydanticgen linkml.generators.pythongen linkml.generators.rdfgen linkml.generators.shaclgen linkml.generators.shexgen linkml.generators.sparqlgen linkml.generators.sqlddlgen linkml.generators.summarygen linkml.generators.yamlgen linkml.generators.yumlgen linkml.reporting linkml.reporting.model linkml.utils linkml.utils.converter linkml.utils.datautils linkml.utils.datavalidator linkml.utils.execute_tutorial linkml.utils.generator linkml.utils.helpers linkml.utils.ifabsent_functions linkml.utils.mergeutils linkml.utils.rawloader linkml.utils.schemaloader linkml.utils.schemasynopsis linkml.utils.typereferences linkml.utils.validation

mrf() (in module linkml.utils.rawloader)

N

name (linkml.generators.oocodegen.OOClass attribute) (linkml.generators.oocodegen.OODocument attribute) (linkml.generators.oocodegen.OOField attribute) (linkml.generators.sqlddlgen.SQLColumn attribute) (linkml.generators.sqlddlgen.SQLSchema attribute) (linkml.generators.sqlddlgen.SQLTable attribute) (linkml.utils.typereferences.RefType attribute) named_graphs (linkml.generators.sparqlgen.SparqlGenerator attribute)

NamespaceGenerator (class in linkml.generators.namespacegen) namespaces (linkml.utils.generator.Generator attribute) neighborhood() (linkml.utils.generator.Generator method) no_types_dir (linkml.generators.markdowngen.MarkdownGenerator attribute) node() (linkml.generators.dotgen.DotGenerator method) noimages (linkml.generators.markdowngen.MarkdownGenerator attribute) not_closed (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) noyuml (linkml.generators.markdowngen.MarkdownGenerator attribute)

O

obj_for() (linkml.utils.generator.Generator method) object (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) object_str (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) ontology_uri_suffix (linkml.generators.owlgen.OwlSchemaGenerator attribute) OOClass (class in linkml.generators.oocodegen) OOCodeGenerator (class in linkml.generators.oocodegen) OODocument (class in linkml.generators.oocodegen) OOField (class in linkml.generators.oocodegen) optional_identifier_class_map (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) order_by (linkml.generators.sqlddlgen.Backref attribute)

original_column (linkml.generators.sqlddlgen.Backref attribute) original_schema (linkml.generators.jsonldgen.JSONLDGenerator attribute) output (linkml.generators.excelgen.ExcelGenerator attribute) (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.utils.execute_tutorial.Block attribute) (linkml.utils.generator.Generator attribute) output_file_name (linkml.generators.yumlgen.YumlGenerator attribute) OwlSchemaGenerator (class in linkml.generators.owlgen) own_slot_names() (linkml.utils.generator.Generator method) own_slots() (linkml.utils.generator.Generator method) owners (linkml.utils.schemasynopsis.SchemaSynopsis attribute) ownslots (linkml.utils.schemasynopsis.SchemaSynopsis attribute)

P

package (linkml.generators.oocodegen.OOClass attribute) (linkml.generators.oocodegen.OOCodeGenerator attribute) (linkml.generators.oocodegen.OODocument attribute) para() (linkml.generators.markdowngen.MarkdownGenerator static method) parent() (linkml.utils.generator.Generator method) parse_file_to_blocks() (in module linkml.utils.execute_tutorial) Policy (class in linkml_runtime.utils.inference_utils) pred_hier() (linkml.generators.markdowngen.MarkdownGenerator method) predicate (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) predicate_cardinality() (linkml.generators.markdowngen.MarkdownGenerator static method) prefixes (linkml.generators.jsonldcontextgen.ContextGenerator attribute) PrefixGenerator (class in linkml.generators.prefixmapgen) primary_keys (linkml.generators.sqlddlgen.SQLTable attribute) primary_keys_for() (linkml.generators.pythongen.PythonGenerator method)

prior_lines (linkml.utils.execute_tutorial.Block attribute) Problem (class in linkml.reporting.model) ProblemSlotInapplicable (class in linkml.reporting.model) ProblemSlotMissing (class in linkml.reporting.model) ProblemSlotUndeclared (class in linkml.reporting.model) process_slot_usage_definitions() (linkml.utils.schemaloader.SchemaLoader method) process_slot_usages() (linkml.utils.schemaloader.SchemaLoader method) ProjectConfiguration (class in linkml.generators.projectgen) ProjectGenerator (class in linkml.generators.projectgen), [1] prop_modifier() (linkml.generators.yumlgen.YumlGenerator method) property (linkml.generators.golrgen.GOLRField attribute) ProtoGenerator (class in linkml.generators.protogen), [1] PydanticGenerator (class in linkml.generators.pydanticgen), [1] python_uri_for() (linkml.generators.pythongen.PythonGenerator method) PythonGenerator (class in linkml.generators.pythongen), [1]

R

raise_value_error() (linkml.utils.schemaloader.SchemaLoader static method) raise_value_errors() (linkml.utils.schemaloader.SchemaLoader static method) range (linkml.generators.oocodegen.OOField attribute) range_cardinality() (linkml.generators.markdowngen.MarkdownGenerator static method) (linkml.generators.pythongen.PythonGenerator method) range_type_name() (linkml.generators.pythongen.PythonGenerator method) range_type_path() (linkml.utils.generator.Generator method) rangerefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) RDFGenerator (class in linkml.generators.rdfgen) RDFLibLoader (class in linkml_runtime.loaders) rdfs (linkml.generators.owlgen.MetadataProfile attribute) referenced (linkml.generators.yumlgen.YumlGenerator attribute) referenced_by (linkml.generators.sqlddlgen.SQLTable attribute) References (class in linkml.utils.typereferences) RefType (class in linkml.utils.typereferences) relative_slot_num (linkml.generators.protogen.ProtoGenerator attribute)

remove_column() (linkml.generators.sqlddlgen.SQLTable method) remove_duplicates() (in module linkml.utils.helpers) replace_invalid_identifier_character() (linkml.generators.oocodegen.OOCodeGenerator method) Report (class in linkml.reporting.model) report__results (linkml.reporting.model.slots attribute) requires_metamodel (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.excelgen.ExcelGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.oocodegen.OOCodeGenerator attribute) (linkml.generators.owlgen.OwlSchemaGenerator attribute) (linkml.utils.generator.Generator attribute) resolve() (linkml.utils.schemaloader.SchemaLoader method) results (linkml.reporting.model.Report attribute) roots (linkml.utils.schemasynopsis.SchemaSynopsis attribute)

S

schema (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.owlgen.OwlSchemaGenerator attribute) (linkml.generators.shaclgen.ShaclGenerator attribute) (linkml.utils.datavalidator.DataValidator attribute) (linkml.utils.generator.Generator attribute) (linkml.utils.schemasynopsis.SchemaSynopsis attribute) schema_errors() (linkml.utils.schemaloader.SchemaLoader method) schema_generating (linkml.generators.golrgen.GOLRClass attribute) SchemaDefinition (class in linkml_runtime.linkml_model.meta) SchemaLoader (class in linkml.utils.schemaloader) schemaobj (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) SchemaSynopsis (class in linkml.utils.schemasynopsis) SchemaView (class in linkml_runtime.utils.schemaview), [1] schemaview (linkml.utils.generator.Generator attribute) sep (linkml.generators.csvgen.CsvGenerator attribute) serialize() (linkml.generators.javagen.JavaGenerator method), [1] (linkml.generators.jsonldcontextgen.ContextGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method), [1] (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.oocodegen.OOCodeGenerator method) (linkml.generators.protogen.ProtoGenerator method) (linkml.generators.pydanticgen.PydanticGenerator method), [1] (linkml.generators.pythongen.PythonGenerator method) (linkml.generators.shaclgen.ShaclGenerator method), [1] (linkml.generators.sparqlgen.SparqlGenerator method), [1] (linkml.generators.sqlalchemygen.SQLAlchemyGenerator method) (linkml.generators.yamlgen.YAMLGenerator method), [1] (linkml.utils.generator.Generator method) set_from_schema() (in module linkml.utils.mergeutils) severity (linkml.reporting.model.slots attribute) SeverityOptions (class in linkml.reporting.model) ShaclGenerator (class in linkml.generators.shaclgen), [1] shape (linkml.generators.shexgen.ShExGenerator attribute) shapes (linkml.generators.shexgen.ShExGenerator attribute) shared_arguments() (in module linkml.utils.generator) sheet_name_cols (linkml.generators.excelgen.ExcelGenerator attribute) shex (linkml.generators.shexgen.ShExGenerator attribute) ShExGenerator (class in linkml.generators.shexgen) slot slot_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) slot_applicable_range_elements() (linkml_runtime.utils.schemaview.SchemaView method) slot_children() (linkml_runtime.utils.schemaview.SchemaView method) slot_class_maps (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) slot_definition_for() (linkml.utils.schemaloader.SchemaLoader method) slot_descendants() (linkml_runtime.utils.schemaview.SchemaView method) slot_field() (linkml.generators.markdowngen.MarkdownGenerator method) slot_for() (linkml.utils.generator.Generator method) slot_is_true_for_metadata_property() (linkml_runtime.utils.schemaview.SchemaView method) slot_leaves() (linkml_runtime.utils.schemaview.SchemaView method) slot_link() (linkml.generators.markdowngen.MarkdownGenerator method)

slot_name() (linkml.utils.generator.Generator method) slot_name_for() (linkml.utils.schemaloader.SchemaLoader static method) slot_name_mappings() (linkml_runtime.utils.schemaview.SchemaView method) slot_owl_type() (linkml.generators.owlgen.OwlSchemaGenerator method) slot_parents() (linkml_runtime.utils.schemaview.SchemaView method) slot_range_as_union() (linkml_runtime.utils.schemaview.SchemaView method) slot_range_path() (linkml.utils.generator.Generator method) slot_roots() (linkml_runtime.utils.schemaview.SchemaView method) slot_usage_name() (in module linkml.utils.mergeutils) slotclasses (linkml.utils.schemasynopsis.SchemaSynopsis attribute) SlotDefinition (class in linkml_runtime.linkml_model.meta) slotrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) slots (class in linkml.reporting.model) slottab (linkml.generators.summarygen.SummaryGenerator attribute) slotusages (linkml.utils.schemasynopsis.SchemaSynopsis attribute) sort_class_slots (linkml.utils.generator.Generator attribute) sort_classes() (linkml.generators.pydanticgen.PydanticGenerator method) source (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) source_class (linkml.generators.oocodegen.OOClass attribute) source_file_date (linkml.utils.generator.Generator attribute) source_file_size (linkml.utils.generator.Generator attribute) source_schema (linkml.generators.oocodegen.OODocument attribute) source_slot (linkml.generators.oocodegen.OOField attribute) sparql (linkml.generators.sparqlgen.SparqlGenerator attribute) SparqlGenerator (class in linkml.generators.sparqlgen), [1] split_sparql() (linkml.generators.sparqlgen.SparqlGenerator method) SQLAlchemyGenerator (class in linkml.generators.sqlalchemygen) SQLColumn (class in linkml.generators.sqlddlgen) SQLDDLGenerator (class in linkml.generators.sqlddlgen) SQLSchema (class in linkml.generators.sqlddlgen) sqlschema (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) SQLStore (class in linkml.utils.sqlutils) SQLTable (class in linkml.generators.sqlddlgen) strval() (in module linkml.utils.ifabsent_functions) subject (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) subset_for() (linkml.utils.generator.Generator method) subset_link() (linkml.generators.markdowngen.MarkdownGenerator method) subset_name() (linkml.utils.generator.Generator method) subsetrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) summarize_class_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_element() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_enum_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_slot_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_type_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summary() (linkml.utils.schemasynopsis.SchemaSynopsis method) SummaryGenerator (class in linkml.generators.summarygen)

T

table (linkml.generators.sqlddlgen.SQLColumn attribute) tables (linkml.generators.sqlddlgen.SQLSchema attribute) template_file (linkml.generators.oocodegen.OOCodeGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) title (linkml.utils.execute_tutorial.Block attribute) to_sqla() (linkml.utils.sqlutils.SQLStore method) to_uri() (linkml.generators.markdowngen.MarkdownGenerator method) top_class (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) top_value_uri (linkml.generators.owlgen.OwlSchemaGenerator attribute) topClass (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute)

type (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) type_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) type_link() (linkml.generators.markdowngen.MarkdownGenerator method) type_objects (linkml.generators.owlgen.OwlSchemaGenerator attribute) type_parents() (linkml_runtime.utils.schemaview.SchemaView method) typebases (linkml.utils.schemasynopsis.SchemaSynopsis attribute) typeofs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) typerefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute)

U

update() (linkml.utils.typereferences.References method) uri_for() (in module linkml.utils.ifabsent_functions) usage_index() (linkml_runtime.utils.schemaview.SchemaView method) use_inherits (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) uses_schemaloader (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.excelgen.ExcelGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.generators.oocodegen.OOCodeGenerator attribute) (linkml.generators.owlgen.OwlSchemaGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) (linkml.generators.protogen.ProtoGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.shaclgen.ShaclGenerator attribute) (linkml.generators.shexgen.ShExGenerator attribute) (linkml.generators.sparqlgen.SparqlGenerator attribute) (linkml.generators.yamlgen.YAMLGenerator attribute) (linkml.utils.generator.Generator attribute)

useuris (linkml.utils.generator.Generator attribute)

V

valid_formats (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.excelgen.ExcelGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.javagen.JavaGenerator attribute) (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.generators.namespacegen.NamespaceGenerator attribute) (linkml.generators.owlgen.OwlSchemaGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) (linkml.generators.protogen.ProtoGenerator attribute) (linkml.generators.pydanticgen.PydanticGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.shaclgen.ShaclGenerator attribute) (linkml.generators.shexgen.ShExGenerator attribute) (linkml.generators.sparqlgen.SparqlGenerator attribute) (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) (linkml.generators.summarygen.SummaryGenerator attribute) (linkml.generators.yamlgen.YAMLGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) validate_item_names() (linkml.utils.schemaloader.SchemaLoader method) validate_object() (in module linkml.utils.validation) validateonly (linkml.generators.yamlgen.YAMLGenerator attribute) verbose (linkml.utils.generator.Generator attribute) visit_all_class_slots (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.generators.namespacegen.NamespaceGenerator attribute) (linkml.generators.oocodegen.OOCodeGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) (linkml.generators.protogen.ProtoGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.shaclgen.ShaclGenerator attribute) (linkml.generators.shexgen.ShExGenerator attribute) (linkml.generators.sparqlgen.SparqlGenerator attribute) (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) visit_all_slots (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) visit_class() (linkml.generators.csvgen.CsvGenerator method) (linkml.generators.dotgen.DotGenerator method) (linkml.generators.excelgen.ExcelGenerator method) (linkml.generators.golrgen.GolrSchemaGenerator method) (linkml.generators.graphqlgen.GraphqlGenerator method) (linkml.generators.jsonldcontextgen.ContextGenerator method) (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.generators.prefixmapgen.PrefixGenerator method) (linkml.generators.protogen.ProtoGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.sqlddlgen.SQLDDLGenerator method) (linkml.generators.summarygen.SummaryGenerator method) (linkml.utils.generator.Generator method)

visit_class_slot() (linkml.generators.dotgen.DotGenerator method) (linkml.generators.excelgen.ExcelGenerator method) (linkml.generators.golrgen.GolrSchemaGenerator method) (linkml.generators.graphqlgen.GraphqlGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.protogen.ProtoGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.sqlddlgen.SQLDDLGenerator method) (linkml.generators.summarygen.SummaryGenerator method) (linkml.utils.generator.Generator method) visit_enum() (linkml.generators.excelgen.ExcelGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.utils.generator.Generator method) visit_schema() (linkml.generators.csvgen.CsvGenerator method) (linkml.generators.dotgen.DotGenerator method) (linkml.generators.golrgen.GolrSchemaGenerator method) (linkml.generators.jsonldcontextgen.ContextGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.generators.prefixmapgen.PrefixGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.summarygen.SummaryGenerator method) (linkml.generators.yumlgen.YumlGenerator method) (linkml.utils.generator.Generator method) visit_slot() (linkml.generators.jsonldcontextgen.ContextGenerator method) (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.generators.prefixmapgen.PrefixGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.utils.generator.Generator method) visit_subset() (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.utils.generator.Generator method) visit_type() (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.utils.generator.Generator method) visits_are_sorted (linkml.generators.owlgen.OwlSchemaGenerator attribute) (linkml.utils.generator.Generator attribute)

W

warn_on_exist (linkml.generators.markdowngen.MarkdownGenerator attribute) WARNING (linkml.reporting.model.SeverityOptions attribute) wb_name (linkml.generators.excelgen.ExcelGenerator attribute) weight (linkml.generators.golrgen.GOLRClass attribute)

workbook (linkml.generators.excelgen.ExcelGenerator attribute) write_lines() (in module linkml.utils.execute_tutorial) write_sqla_python_imperative() (linkml.generators.sqlddlgen.SQLDDLGenerator method) write_to_file() (in module linkml.utils.helpers) writer (linkml.generators.csvgen.CsvGenerator attribute)

X

xlink() (linkml.generators.markdowngen.MarkdownGenerator method)

Y

YAMLDumper (class in linkml_runtime.dumpers) YAMLFILE gen-excel command line option gen-graphql command line option gen-java command line option gen-json-schema command line option gen-jsonld-context command line option gen-markdown command line option gen-owl command line option gen-prefix-map command line option gen-project command line option gen-proto command line option gen-pydantic command line option gen-python command line option gen-shacl command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option, [1] gen-sssom command line option gen-typescript command line option

YAMLGenerator (class in linkml.generators.yamlgen), [1] YAMLLoader (class in linkml_runtime.loaders) YumlGenerator (class in linkml.generators.yumlgen)