Index

Symbols

--add-ols-annotations gen-owl command line option --classes <classes> gen-markdown command line option --classvars gen-python command line option --closed gen-json-schema command line option --config-file <config_file> gen-project command line option --dialect <dialect> gen-sqlddl command line option --dir <dir> gen-markdown command line option gen-project command line option gen-sparql command line option --direct-mapping gen-sqlddl command line option --exclude <exclude> gen-project command line option --format <format> gen-excel command line option gen-java command line option gen-json-schema command line option gen-markdown command line option gen-owl command line option gen-python command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option --generator-arguments <generator_arguments> gen-project command line option --genmeta gen-python command line option --head gen-python command line option --img gen-markdown command line option --importmap <importmap> gen-excel command line option gen-java command line option gen-json-schema command line option gen-markdown command line option gen-owl command line option gen-python command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option --include <include> gen-project command line option --index-file <index_file> gen-markdown command line option --inline gen-json-schema command line option --log_level <log_level> gen-excel command line option gen-java command line option gen-json-schema command line option gen-markdown command line option gen-owl command line option gen-python command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option --map-fields <map_fields> gen-markdown command line option --mergeimports gen-excel command line option gen-java command line option gen-json-schema command line option gen-markdown command line option gen-owl command line option gen-project command line option gen-python command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option --metaclasses gen-owl command line option --metadata gen-excel command line option gen-java command line option gen-json-schema command line option gen-markdown command line option gen-owl command line option gen-python command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option --metauris gen-excel command line option gen-java command line option gen-json-schema command line option gen-markdown command line option gen-owl command line option gen-python command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option --no-add-ols-annotations gen-owl command line option --no-classvars gen-python command line option --no-direct-mapping gen-sqlddl command line option --no-genmeta gen-python command line option --no-head gen-python command line option --no-mergeimports gen-excel command line option gen-java command line option gen-json-schema command line option gen-markdown command line option gen-owl command line option gen-project command line option gen-python command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option

--no-metaclasses gen-owl command line option --no-metadata gen-excel command line option gen-java command line option gen-json-schema command line option gen-markdown command line option gen-owl command line option gen-python command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option --no-slots gen-python command line option --no-type-objects gen-owl command line option --no-use-foreign-keys gen-sqlddl command line option --noimages gen-markdown command line option --not-closed gen-json-schema command line option --notypesdir gen-markdown command line option --noyuml gen-markdown command line option --ontology-iri-suffix <ontology_iri_suffix> gen-owl command line option --output <output> gen-excel command line option gen-owl command line option gen-shex command line option --output_directory <output_directory> gen-java command line option --package <package> gen-java command line option --python-import <python_import> gen-sqlddl command line option --slots gen-python command line option --sqla-file <sqla_file> gen-sqlddl command line option --template_file <template_file> gen-java command line option --top-class <top_class> gen-json-schema command line option --type-objects gen-owl command line option --use-foreign-keys gen-sqlddl command line option --useuris gen-excel command line option gen-java command line option gen-json-schema command line option gen-markdown command line option gen-owl command line option gen-python command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option --warnonexist gen-markdown command line option -A gen-project command line option -C gen-project command line option -c gen-markdown command line option -d gen-markdown command line option gen-project command line option gen-sparql command line option -f gen-excel command line option gen-java command line option gen-json-schema command line option gen-markdown command line option gen-owl command line option gen-python command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option -I gen-markdown command line option gen-project command line option -i gen-json-schema command line option gen-markdown command line option -im gen-excel command line option gen-java command line option gen-json-schema command line option gen-markdown command line option gen-owl command line option gen-python command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option -M gen-markdown command line option -o gen-excel command line option gen-owl command line option gen-shex command line option -t gen-json-schema command line option -X gen-project command line option

A

abstracts (linkml.utils.schemasynopsis.SchemaSynopsis attribute) add_class() (linkml_runtime.utils.schemaview.SchemaView method) add_column() (linkml.generators.sqlddlgen.SQLTable method) add_enum() (linkml_runtime.utils.schemaview.SchemaView method) add_id_prefixes() (linkml.utils.generator.Generator method) add_mappings() (linkml.utils.generator.Generator method) add_metadata() (linkml.generators.owlgen.OwlSchemaGenerator method) add_prefix() (linkml.utils.generator.Generator method) add_ref() (linkml.utils.schemasynopsis.SchemaSynopsis method) add_slot() (linkml_runtime.utils.schemaview.SchemaView method) add_subset() (linkml_runtime.utils.schemaview.SchemaView method) add_table() (linkml.generators.sqlddlgen.SQLSchema method) add_type() (linkml_runtime.utils.schemaview.SchemaView method) addref() (linkml.utils.typereferences.References method) adjust_slot() (linkml.generators.jsonldgen.JSONLDGenerator method) alias_root() (in module linkml.utils.mergeutils) aliased_slot_name() (linkml.utils.generator.Generator method) all_class() (linkml_runtime.utils.schemaview.SchemaView method) all_classes() (linkml_runtime.utils.schemaview.SchemaView method) all_columns() (linkml.generators.sqlddlgen.SQLSchema method)

all_element() (linkml_runtime.utils.schemaview.SchemaView method) all_elements() (linkml_runtime.utils.schemaview.SchemaView method) all_enum() (linkml_runtime.utils.schemaview.SchemaView method) all_enums() (linkml_runtime.utils.schemaview.SchemaView method) all_schema() (linkml_runtime.utils.schemaview.SchemaView method) all_slot() (linkml_runtime.utils.schemaview.SchemaView method) all_slots() (linkml.utils.generator.Generator method) (linkml_runtime.utils.schemaview.SchemaView method) all_subset() (linkml_runtime.utils.schemaview.SchemaView method) all_subsets() (linkml_runtime.utils.schemaview.SchemaView method) all_type() (linkml_runtime.utils.schemaview.SchemaView method) all_types() (linkml_runtime.utils.schemaview.SchemaView method) ancestors() (linkml.utils.generator.Generator method) anchor() (linkml.generators.markdowngen.MarkdownGenerator static method) anchorend() (linkml.generators.markdowngen.MarkdownGenerator static method) annotation_dict() (linkml_runtime.utils.schemaview.SchemaView method) applytorefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) applytos (linkml.utils.schemasynopsis.SchemaSynopsis attribute) as_ddlstr() (linkml.generators.sqlddlgen.SQLColumn method) as_var() (linkml.generators.sqlddlgen.SQLTable method)

B

Backref (class in linkml.generators.sqlddlgen) backref_column (linkml.generators.sqlddlgen.Backref attribute) backrefs (linkml.generators.sqlddlgen.SQLTable attribute)

base_dir (linkml.utils.generator.Generator attribute) base_type (linkml.generators.sqlddlgen.SQLColumn attribute) bbin() (linkml.generators.markdowngen.MarkdownGenerator method) bullet() (linkml.generators.markdowngen.MarkdownGenerator static method)

C

cardinality (linkml.generators.golrgen.GOLRField attribute) cardinality() (linkml.generators.yumlgen.YumlGenerator static method) check_prefix() (linkml.utils.schemaloader.SchemaLoader method) check_prefixes() (linkml.utils.schemaloader.SchemaLoader method) CheckResult (class in linkml.reporting.model) class class_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) class_associations() (linkml.generators.yumlgen.YumlGenerator method) class_box() (linkml.generators.yumlgen.YumlGenerator method) class_children() (linkml_runtime.utils.schemaview.SchemaView method) class_class_curie (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.Problem attribute) (linkml.reporting.model.ProblemSlotInapplicable attribute) (linkml.reporting.model.ProblemSlotMissing attribute) (linkml.reporting.model.ProblemSlotUndeclared attribute) (linkml.reporting.model.Report attribute) class_class_uri (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.Problem attribute) (linkml.reporting.model.ProblemSlotInapplicable attribute) (linkml.reporting.model.ProblemSlotMissing attribute) (linkml.reporting.model.ProblemSlotUndeclared attribute) (linkml.reporting.model.Report attribute) class_descendants() (linkml_runtime.utils.schemaview.SchemaView method) class_hier() (linkml.generators.markdowngen.MarkdownGenerator method) class_identifier() (linkml.utils.generator.Generator method) class_identifier_path() (linkml.utils.generator.Generator method) class_leaves() (linkml_runtime.utils.schemaview.SchemaView method) class_link() (linkml.generators.markdowngen.MarkdownGenerator method)

class_model_uri (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.Problem attribute) (linkml.reporting.model.ProblemSlotInapplicable attribute) (linkml.reporting.model.ProblemSlotMissing attribute) (linkml.reporting.model.ProblemSlotUndeclared attribute) (linkml.reporting.model.Report attribute) class_name (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.Problem attribute) (linkml.reporting.model.ProblemSlotInapplicable attribute) (linkml.reporting.model.ProblemSlotMissing attribute) (linkml.reporting.model.ProblemSlotUndeclared attribute) (linkml.reporting.model.Report attribute) class_or_type_for() (linkml.utils.generator.Generator method) class_or_type_name() (linkml.utils.generator.Generator method) class_parents() (linkml_runtime.utils.schemaview.SchemaView method) class_reference_type() (linkml.generators.pythongen.PythonGenerator method) class_roots() (linkml_runtime.utils.schemaview.SchemaView method) class_slots() (linkml_runtime.utils.schemaview.SchemaView method) class_type_link() (linkml.generators.markdowngen.MarkdownGenerator method) ClassDefinition (class in linkml_runtime.linkml_model.meta) classrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) codesets (linkml.utils.schemasynopsis.SchemaSynopsis attribute) columns (linkml.generators.sqlddlgen.SQLTable attribute) compile_module() (linkml.generators.pythongen.PythonGenerator method) ContextGenerator (class in linkml.generators.jsonldcontextgen) convert_range() (in module linkml.generators.infer_model) CsvGenerator (class in linkml.generators.csvgen) curie_for() (in module linkml.utils.ifabsent_functions)

D

DDLEntity (class in linkml.generators.sqlddlgen) default_curie_or_uri() (in module linkml.utils.ifabsent_functions) default_ns_for() (in module linkml.utils.ifabsent_functions) default_prefix() (linkml.utils.generator.Generator method) default_uri_for() (in module linkml.utils.ifabsent_functions) definingslots (linkml.utils.schemasynopsis.SchemaSynopsis attribute) delete_class() (linkml_runtime.utils.schemaview.SchemaView method) delete_enum() (linkml_runtime.utils.schemaview.SchemaView method) delete_slot() (linkml_runtime.utils.schemaview.SchemaView method) delete_subset() (linkml_runtime.utils.schemaview.SchemaView method) delete_type() (linkml_runtime.utils.schemaview.SchemaView method) desc_for() (linkml.generators.markdowngen.MarkdownGenerator method) description (linkml.generators.golrgen.GOLRClass attribute) (linkml.generators.golrgen.GOLRField attribute) (linkml.generators.sqlddlgen.DDLEntity attribute)

dialect (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) dir_path() (linkml.generators.markdowngen.MarkdownGenerator method) directory (linkml.generators.projectgen.ProjectConfiguration attribute) directory_output (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.utils.generator.Generator attribute) display_name (linkml.generators.golrgen.GOLRClass attribute) (linkml.generators.golrgen.GOLRField attribute) document_category (linkml.generators.golrgen.GOLRClass attribute) domain_slots() (linkml.utils.generator.Generator method) DotGenerator (class in linkml.generators.dotgen) dump() (linkml_runtime.dumpers.json_dumper.JSONDumper method) dumps() (linkml_runtime.dumpers.json_dumper.JSONDumper method)

E

edge() (linkml.generators.dotgen.DotGenerator method) element_header() (linkml.generators.markdowngen.MarkdownGenerator method) element_properties() (linkml.generators.markdowngen.MarkdownGenerator method) ElementDefinition (class in linkml.generators.owlgen) emit() (linkml.generators.lpgen.LogicProgramGenerator method) empty_references() (in module linkml.utils.schemasynopsis) end_class() (linkml.generators.dotgen.DotGenerator method) (linkml.generators.golrgen.GolrSchemaGenerator method) (linkml.generators.graphqlgen.GraphqlGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.protogen.ProtoGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.sqlddlgen.SQLDDLGenerator method) (linkml.utils.generator.Generator method) end_schema() (linkml.generators.dotgen.DotGenerator method) (linkml.generators.jsonldcontextgen.ContextGenerator method) (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.generators.prefixmapgen.PrefixGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.generators.rdfgen.RDFGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.sqlddlgen.SQLDDLGenerator method) (linkml.utils.generator.Generator method)

enum enum_hier() (linkml.generators.markdowngen.MarkdownGenerator method) enum_identifier_path() (linkml.utils.generator.Generator method) enum_link() (linkml.generators.markdowngen.MarkdownGenerator method) enumrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) ERROR (linkml.reporting.model.SeverityOptions attribute) errors() (linkml.utils.schemasynopsis.SchemaSynopsis method) excludes (linkml.generators.projectgen.ProjectConfiguration attribute) exist_warning() (linkml.generators.markdowngen.MarkdownGenerator method) expand_curie() (linkml_runtime.utils.schemaview.SchemaView method)

F

FATAL (linkml.reporting.model.SeverityOptions attribute) fields (linkml.generators.golrgen.GOLRClass attribute) filtered_cls_slots() (linkml.generators.yumlgen.YumlGenerator method)

foreign_key (linkml.generators.sqlddlgen.SQLColumn attribute) formatted_element_name() (linkml.utils.generator.Generator method) forward_reference() (linkml.generators.pythongen.PythonGenerator method) frontmatter() (linkml.generators.markdowngen.MarkdownGenerator method)

G

gen-excel command line option --format <format> --importmap <importmap> --log_level <log_level> --mergeimports --metadata --metauris --no-mergeimports --no-metadata --output <output> --useuris -f -im -o YAMLFILE gen-java command line option --format <format> --importmap <importmap> --log_level <log_level> --mergeimports --metadata --metauris --no-mergeimports --no-metadata --output_directory <output_directory> --package <package> --template_file <template_file> --useuris -f -im YAMLFILE gen-json-schema command line option --closed --format <format> --importmap <importmap> --inline --log_level <log_level> --mergeimports --metadata --metauris --no-mergeimports --no-metadata --not-closed --top-class <top_class> --useuris -f -i -im -t YAMLFILE gen-markdown command line option --classes <classes> --dir <dir> --format <format> --img --importmap <importmap> --index-file <index_file> --log_level <log_level> --map-fields <map_fields> --mergeimports --metadata --metauris --no-mergeimports --no-metadata --noimages --notypesdir --noyuml --useuris --warnonexist -c -d -f -i -I -im -M YAMLFILE gen-owl command line option --add-ols-annotations --format <format> --importmap <importmap> --log_level <log_level> --mergeimports --metaclasses --metadata --metauris --no-add-ols-annotations --no-mergeimports --no-metaclasses --no-metadata --no-type-objects --ontology-iri-suffix <ontology_iri_suffix> --output <output> --type-objects --useuris -f -im -o YAMLFILE gen-project command line option --config-file <config_file> --dir <dir> --exclude <exclude> --generator-arguments <generator_arguments> --include <include> --mergeimports --no-mergeimports -A -C -d -I -X YAMLFILE gen-python command line option --classvars --format <format> --genmeta --head --importmap <importmap> --log_level <log_level> --mergeimports --metadata --metauris --no-classvars --no-genmeta --no-head --no-mergeimports --no-metadata --no-slots --slots --useuris -f -im YAMLFILE gen-shex command line option --format <format> --importmap <importmap> --log_level <log_level> --mergeimports --metadata --metauris --no-mergeimports --no-metadata --output <output> --useuris -f -im -o YAMLFILE

gen-sparql command line option --dir <dir> --format <format> --importmap <importmap> --log_level <log_level> --mergeimports --metadata --metauris --no-mergeimports --no-metadata --useuris -d -f -im YAMLFILE gen-sqlddl command line option --dialect <dialect> --direct-mapping --format <format> --importmap <importmap> --log_level <log_level> --mergeimports --metadata --metauris --no-direct-mapping --no-mergeimports --no-metadata --no-use-foreign-keys --python-import <python_import> --sqla-file <sqla_file> --use-foreign-keys --useuris -f -im YAMLFILE gen_class_meta() (linkml.generators.pythongen.PythonGenerator method) gen_class_reference() (linkml.generators.pythongen.PythonGenerator static method) gen_class_variable() (linkml.generators.pythongen.PythonGenerator method) gen_class_variables() (linkml.generators.pythongen.PythonGenerator method) gen_classdef() (linkml.generators.pythongen.PythonGenerator method) gen_classdefs() (linkml.generators.pythongen.PythonGenerator method) gen_enum() (linkml.generators.pythongen.PythonGenerator method) gen_enum_comment() (linkml.generators.pythongen.PythonGenerator method) gen_enum_definition() (linkml.generators.pythongen.PythonGenerator method) gen_enum_description() (linkml.generators.pythongen.PythonGenerator method) gen_enumerations() (linkml.generators.pythongen.PythonGenerator method) gen_import_list() (linkml.generators.pythongen.PythonGenerator method) gen_imports() (linkml.generators.pythongen.PythonGenerator method) gen_inherited_slots() (linkml.generators.pythongen.PythonGenerator method) gen_namespaces() (linkml.generators.namespacegen.NamespaceGenerator method) (linkml.generators.pythongen.PythonGenerator method) gen_postinit() (linkml.generators.pythongen.PythonGenerator method) gen_postinits() (linkml.generators.pythongen.PythonGenerator method) gen_pv_constructor() (linkml.generators.pythongen.PythonGenerator method) gen_pvs() (linkml.generators.pythongen.PythonGenerator method) gen_pvs2() (linkml.generators.pythongen.PythonGenerator method) gen_pvs2_initializers() (linkml.generators.pythongen.PythonGenerator method) gen_references() (linkml.generators.pythongen.PythonGenerator method) gen_schema() (linkml.generators.namespacegen.NamespaceGenerator method) (linkml.generators.pythongen.PythonGenerator method) gen_slot() (linkml.generators.pythongen.PythonGenerator method) gen_slotdefs() (linkml.generators.pythongen.PythonGenerator method) gen_type_meta() (linkml.generators.pythongen.PythonGenerator method) gen_typedefs() (linkml.generators.pythongen.PythonGenerator method) generate() (linkml.generators.projectgen.ProjectGenerator method) generate_ddl() (linkml.generators.sqlddlgen.SQLDDLGenerator method) generate_sparql() (linkml.generators.sparqlgen.SparqlGenerator method) Generator (class in linkml.utils.generator) generator_args (linkml.generators.projectgen.ProjectConfiguration attribute) generatorname (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) (linkml.generators.lpgen.LogicProgramGenerator attribute) (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.generators.namespacegen.NamespaceGenerator attribute) (linkml.generators.owlgen.OwlSchemaGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) (linkml.generators.protogen.ProtoGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.shexgen.ShExGenerator attribute) (linkml.generators.sparqlgen.SparqlGenerator attribute) (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) (linkml.generators.summarygen.SummaryGenerator attribute) (linkml.generators.yamlgen.YAMLGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) generatorversion (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) (linkml.generators.lpgen.LogicProgramGenerator attribute) (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.generators.namespacegen.NamespaceGenerator attribute) (linkml.generators.owlgen.OwlSchemaGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) (linkml.generators.protogen.ProtoGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.shexgen.ShExGenerator attribute) (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) (linkml.generators.summarygen.SummaryGenerator attribute) (linkml.generators.yamlgen.YAMLGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) get_class() (linkml_runtime.utils.schemaview.SchemaView method) get_db() (in module linkml.generators.infer_model) get_dumper() (in module linkml.utils.datautils) get_element() (linkml_runtime.utils.schemaview.SchemaView method) get_enum() (linkml_runtime.utils.schemaview.SchemaView method) get_identifier_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_loader() (in module linkml.utils.datautils) get_local_imports() (in module linkml.generators.projectgen) get_mapping_index() (linkml_runtime.utils.schemaview.SchemaView method) get_mappings() (linkml_runtime.utils.schemaview.SchemaView method) get_metamodel_slot_name() (linkml.utils.generator.Generator method) get_pv_element() (in module linkml.generators.infer_model) get_singular_primary_key() (linkml.generators.sqlddlgen.SQLTable method) get_slot() (linkml_runtime.utils.schemaview.SchemaView method) get_sql_range() (linkml.generators.sqlddlgen.SQLDDLGenerator method) get_subset() (linkml_runtime.utils.schemaview.SchemaView method) get_table_by_class_name() (linkml.generators.sqlddlgen.SQLSchema method) get_type() (linkml_runtime.utils.schemaview.SchemaView method) get_uri() (linkml_runtime.utils.schemaview.SchemaView method) GOLRClass (class in linkml.generators.golrgen) GOLRField (class in linkml.generators.golrgen) GolrSchemaGenerator (class in linkml.generators.golrgen) GraphqlGenerator (class in linkml.generators.graphqlgen)

H

header() (linkml.generators.markdowngen.MarkdownGenerator method)

Hit (class in linkml.generators.infer_model)

I

id (linkml.generators.golrgen.GOLRClass attribute) (linkml.generators.golrgen.GOLRField attribute) id_to_url() (linkml.generators.markdowngen.MarkdownGenerator static method) ifabsent_postinit_declaration() (in module linkml.utils.ifabsent_functions) ifabsent_value_declaration() (in module linkml.utils.ifabsent_functions) imports_closure() (linkml_runtime.utils.schemaview.SchemaView method) in_schema (linkml.generators.sqlddlgen.SQLTable attribute) in_schema() (linkml_runtime.utils.schemaview.SchemaView method) includes (linkml.generators.projectgen.ProjectConfiguration attribute) induced_slot() (linkml_runtime.utils.schemaview.SchemaView method) infer_enum_meanings() (in module linkml.generators.infer_model) infer_index_slot() (in module linkml.utils.datautils) infer_model() (in module linkml.generators.infer_model) infer_range() (in module linkml.generators.infer_model) infer_root_class() (in module linkml.utils.datautils) info (linkml.reporting.model.CheckResult attribute) INFO (linkml.reporting.model.SeverityOptions attribute)

info (linkml.reporting.model.slots attribute) inject_primary_keys (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) inschema (linkml.utils.schemasynopsis.SchemaSynopsis attribute) instantiates (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) inverses (linkml.utils.schemasynopsis.SchemaSynopsis attribute) is_class_unconstrained() (linkml.utils.generator.Generator method) is_date() (in module linkml.generators.infer_model) is_inlined() (linkml_runtime.utils.schemaview.SchemaView method) is_key_value_class() (linkml.generators.pythongen.PythonGenerator method) is_primary_key() (linkml.generators.sqlddlgen.SQLColumn method) is_relationship() (linkml_runtime.utils.schemaview.SchemaView method) is_secondary_ref() (linkml.generators.markdowngen.MarkdownGenerator method) is_singular_primary_key (linkml.generators.sqlddlgen.SQLColumn attribute) is_slot_object_property() (linkml.generators.owlgen.OwlSchemaGenerator method) isabsent_match() (in module linkml.utils.ifabsent_functions) isarefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute)

J

JavaGenerator (class in linkml.generators.javagen) JSONDumper (class in linkml_runtime.dumpers.json_dumper)

JSONLDGenerator (class in linkml.generators.jsonldgen) JSONLoader (class in linkml_runtime.loaders) JsonSchemaGenerator (class in linkml.generators.jsonschemagen), [1], [2]

K

key_name_for() (linkml.generators.pythongen.PythonGenerator method)

L

linkml module linkml.generators module linkml.generators.csvgen module linkml.generators.dotgen module linkml.generators.golrgen module linkml.generators.graphqlgen module linkml.generators.infer_model module linkml.generators.jsonldcontextgen module linkml.generators.jsonldgen module linkml.generators.jsonschemagen module linkml.generators.lpgen module linkml.generators.markdowngen module linkml.generators.namespacegen module linkml.generators.owlgen module linkml.generators.prefixmapgen module linkml.generators.projectgen module linkml.generators.protogen module linkml.generators.pythongen module linkml.generators.rdfgen module linkml.generators.shexgen module

linkml.generators.sparqlgen module linkml.generators.sqlddlgen module linkml.generators.summarygen module linkml.generators.yamlgen module linkml.generators.yumlgen module linkml.reporting module linkml.reporting.model module linkml.utils module linkml.utils.datautils module linkml.utils.generator module linkml.utils.ifabsent_functions module linkml.utils.mergeutils module linkml.utils.rawloader module linkml.utils.schemaloader module linkml.utils.schemasynopsis module linkml.utils.typereferences module linkml.utils.validation module load_raw_schema() (in module linkml.utils.rawloader) loads() (linkml_runtime.loaders.JSONLoader method) logger_warning() (linkml.utils.schemaloader.SchemaLoader method) LogicProgramGenerator (class in linkml.generators.lpgen)

M

mapped_to (linkml.generators.sqlddlgen.SQLColumn attribute) (linkml.generators.sqlddlgen.SQLSchema attribute) (linkml.generators.sqlddlgen.SQLTable attribute) mapped_to_alias (linkml.generators.sqlddlgen.SQLColumn attribute) mappings() (linkml.generators.markdowngen.MarkdownGenerator method) MarkdownGenerator (class in linkml.generators.markdowngen), [1] materialize_schema() (in module linkml.generators.sparqlgen) merge_class() (linkml.utils.schemaloader.SchemaLoader method) merge_classes() (in module linkml.utils.mergeutils) merge_dicts() (in module linkml.utils.mergeutils) merge_enum() (linkml.utils.schemaloader.SchemaLoader method) merge_enums() (in module linkml.utils.mergeutils) merge_namespaces() (in module linkml.utils.mergeutils) merge_schema() (linkml_runtime.utils.schemaview.SchemaView method) merge_schemas() (in module linkml.utils.mergeutils) merge_slot() (linkml.utils.schemaloader.SchemaLoader method) merge_slots() (in module linkml.utils.mergeutils) merge_type() (linkml.utils.schemaloader.SchemaLoader method) mergeimports (linkml.generators.projectgen.ProjectConfiguration attribute) metamodel_name_map (linkml.utils.generator.Generator attribute) mixinrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) mixins (linkml.utils.schemasynopsis.SchemaSynopsis attribute) module linkml linkml.generators linkml.generators.csvgen linkml.generators.dotgen linkml.generators.golrgen linkml.generators.graphqlgen linkml.generators.infer_model linkml.generators.jsonldcontextgen linkml.generators.jsonldgen linkml.generators.jsonschemagen linkml.generators.lpgen linkml.generators.markdowngen linkml.generators.namespacegen linkml.generators.owlgen linkml.generators.prefixmapgen linkml.generators.projectgen linkml.generators.protogen linkml.generators.pythongen linkml.generators.rdfgen linkml.generators.shexgen linkml.generators.sparqlgen linkml.generators.sqlddlgen linkml.generators.summarygen linkml.generators.yamlgen linkml.generators.yumlgen linkml.reporting linkml.reporting.model linkml.utils linkml.utils.datautils linkml.utils.generator linkml.utils.ifabsent_functions linkml.utils.mergeutils linkml.utils.rawloader linkml.utils.schemaloader linkml.utils.schemasynopsis linkml.utils.typereferences linkml.utils.validation

mrf() (in module linkml.utils.rawloader)

N

name (linkml.generators.infer_model.Hit attribute) (linkml.generators.sqlddlgen.SQLColumn attribute) (linkml.generators.sqlddlgen.SQLSchema attribute) (linkml.generators.sqlddlgen.SQLTable attribute) (linkml.utils.typereferences.RefType attribute)

NamespaceGenerator (class in linkml.generators.namespacegen) neighborhood() (linkml.utils.generator.Generator method) node() (linkml.generators.dotgen.DotGenerator method)

O

obj_for() (linkml.utils.generator.Generator method) object (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) object_str (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) order_by (linkml.generators.sqlddlgen.Backref attribute)

original_column (linkml.generators.sqlddlgen.Backref attribute) OwlSchemaGenerator (class in linkml.generators.owlgen) own_slot_names() (linkml.utils.generator.Generator method) own_slots() (linkml.utils.generator.Generator method) owners (linkml.utils.schemasynopsis.SchemaSynopsis attribute) ownslots (linkml.utils.schemasynopsis.SchemaSynopsis attribute)

P

para() (linkml.generators.markdowngen.MarkdownGenerator static method) parent() (linkml.utils.generator.Generator method) pred_hier() (linkml.generators.markdowngen.MarkdownGenerator method) predicate (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) predicate_cardinality() (linkml.generators.markdowngen.MarkdownGenerator static method) PrefixGenerator (class in linkml.generators.prefixmapgen) primary_keys (linkml.generators.sqlddlgen.SQLTable attribute) primary_keys_for() (linkml.generators.pythongen.PythonGenerator method) Problem (class in linkml.reporting.model) ProblemSlotInapplicable (class in linkml.reporting.model)

ProblemSlotMissing (class in linkml.reporting.model) ProblemSlotUndeclared (class in linkml.reporting.model) process_slot_usage_definitions() (linkml.utils.schemaloader.SchemaLoader method) process_slot_usages() (linkml.utils.schemaloader.SchemaLoader method) ProjectConfiguration (class in linkml.generators.projectgen) ProjectGenerator (class in linkml.generators.projectgen), [1] prop_modifier() (linkml.generators.yumlgen.YumlGenerator method) property (linkml.generators.golrgen.GOLRField attribute) ProtoGenerator (class in linkml.generators.protogen) python_uri_for() (linkml.generators.pythongen.PythonGenerator method) PythonGenerator (class in linkml.generators.pythongen), [1]

R

raise_value_error() (linkml.utils.schemaloader.SchemaLoader static method) raise_value_errors() (linkml.utils.schemaloader.SchemaLoader static method) range_cardinality() (linkml.generators.markdowngen.MarkdownGenerator static method) (linkml.generators.pythongen.PythonGenerator method) range_type_name() (linkml.generators.pythongen.PythonGenerator method) range_type_path() (linkml.utils.generator.Generator method) rangerefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) RDFGenerator (class in linkml.generators.rdfgen)

referenced_by (linkml.generators.sqlddlgen.SQLTable attribute) References (class in linkml.utils.typereferences) RefType (class in linkml.utils.typereferences) remove_column() (linkml.generators.sqlddlgen.SQLTable method) Report (class in linkml.reporting.model) report__results (linkml.reporting.model.slots attribute) resolve() (linkml.utils.schemaloader.SchemaLoader method) results (linkml.reporting.model.Report attribute) roots (linkml.utils.schemasynopsis.SchemaSynopsis attribute)

S

schema (linkml.utils.schemasynopsis.SchemaSynopsis attribute) schema_errors() (linkml.utils.schemaloader.SchemaLoader method) schema_generating (linkml.generators.golrgen.GOLRClass attribute) SchemaDefinition (class in linkml_runtime.linkml_model.meta) SchemaLoader (class in linkml.utils.schemaloader) SchemaSynopsis (class in linkml.utils.schemasynopsis) SchemaView (class in linkml_runtime.utils.schemaview), [1] score (linkml.generators.infer_model.Hit attribute) serialize() (linkml.generators.javagen.JavaGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method), [1] (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.generators.sparqlgen.SparqlGenerator method), [1] (linkml.generators.yamlgen.YAMLGenerator method), [1] (linkml.utils.generator.Generator method) set_from_schema() (in module linkml.utils.mergeutils) severity (linkml.reporting.model.slots attribute) SeverityOptions (class in linkml.reporting.model) shared_arguments() (in module linkml.utils.generator) ShExGenerator (class in linkml.generators.shexgen) slot slot_ancestors() (linkml_runtime.utils.schemaview.SchemaView method) slot_children() (linkml_runtime.utils.schemaview.SchemaView method) slot_definition_for() (linkml.utils.schemaloader.SchemaLoader method) slot_field() (linkml.generators.markdowngen.MarkdownGenerator method) slot_for() (linkml.utils.generator.Generator method) slot_leaves() (linkml_runtime.utils.schemaview.SchemaView method) slot_link() (linkml.generators.markdowngen.MarkdownGenerator method) slot_name() (linkml.utils.generator.Generator method) slot_name_for() (linkml.utils.schemaloader.SchemaLoader static method) slot_owl_type() (linkml.generators.owlgen.OwlSchemaGenerator method) slot_parents() (linkml_runtime.utils.schemaview.SchemaView method) slot_range_path() (linkml.utils.generator.Generator method)

slot_roots() (linkml_runtime.utils.schemaview.SchemaView method) slot_usage_name() (in module linkml.utils.mergeutils) slotclasses (linkml.utils.schemasynopsis.SchemaSynopsis attribute) SlotDefinition (class in linkml_runtime.linkml_model.meta) slotrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) slots (class in linkml.reporting.model) slotusages (linkml.utils.schemasynopsis.SchemaSynopsis attribute) sort_class_slots (linkml.utils.generator.Generator attribute) source (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) SparqlGenerator (class in linkml.generators.sparqlgen), [1] split_sparql() (linkml.generators.sparqlgen.SparqlGenerator method) SQLColumn (class in linkml.generators.sqlddlgen) SQLDDLGenerator (class in linkml.generators.sqlddlgen) SQLSchema (class in linkml.generators.sqlddlgen) sqlschema (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) SQLTable (class in linkml.generators.sqlddlgen) strval() (in module linkml.utils.ifabsent_functions) subject (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute) subset_for() (linkml.utils.generator.Generator method) subset_link() (linkml.generators.markdowngen.MarkdownGenerator method) subset_name() (linkml.utils.generator.Generator method) subsetrefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute) summarize_class_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_element() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_enum_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_slot_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summarize_type_definition() (linkml.utils.schemasynopsis.SchemaSynopsis method) summary() (linkml.utils.schemasynopsis.SchemaSynopsis method) SummaryGenerator (class in linkml.generators.summarygen)

T

table (linkml.generators.sqlddlgen.SQLColumn attribute) tables (linkml.generators.sqlddlgen.SQLSchema attribute) term_id (linkml.generators.infer_model.Hit attribute) to_uri() (linkml.generators.markdowngen.MarkdownGenerator method) type (linkml.reporting.model.CheckResult attribute) (linkml.reporting.model.slots attribute)

type_link() (linkml.generators.markdowngen.MarkdownGenerator method) typebases (linkml.utils.schemasynopsis.SchemaSynopsis attribute) typeofs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) typerefs (linkml.utils.schemasynopsis.SchemaSynopsis attribute) (linkml.utils.typereferences.References attribute)

U

update() (linkml.utils.typereferences.References method) uri_for() (in module linkml.utils.ifabsent_functions)

usage_index() (linkml_runtime.utils.schemaview.SchemaView method) use_inherits (linkml.generators.sqlddlgen.SQLDDLGenerator attribute)

V

valid_formats (linkml.generators.csvgen.CsvGenerator attribute) (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.jsonldgen.JSONLDGenerator attribute) (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) (linkml.generators.lpgen.LogicProgramGenerator attribute) (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.generators.namespacegen.NamespaceGenerator attribute) (linkml.generators.owlgen.OwlSchemaGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) (linkml.generators.protogen.ProtoGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.shexgen.ShExGenerator attribute) (linkml.generators.sparqlgen.SparqlGenerator attribute) (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) (linkml.generators.summarygen.SummaryGenerator attribute) (linkml.generators.yamlgen.YAMLGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) validate_item_names() (linkml.utils.schemaloader.SchemaLoader method) validate_object() (in module linkml.utils.validation) visit_all_class_slots (linkml.generators.dotgen.DotGenerator attribute) (linkml.generators.golrgen.GolrSchemaGenerator attribute) (linkml.generators.graphqlgen.GraphqlGenerator attribute) (linkml.generators.jsonldcontextgen.ContextGenerator attribute) (linkml.generators.jsonschemagen.JsonSchemaGenerator attribute) (linkml.generators.lpgen.LogicProgramGenerator attribute) (linkml.generators.markdowngen.MarkdownGenerator attribute) (linkml.generators.namespacegen.NamespaceGenerator attribute) (linkml.generators.prefixmapgen.PrefixGenerator attribute) (linkml.generators.protogen.ProtoGenerator attribute) (linkml.generators.pythongen.PythonGenerator attribute) (linkml.generators.rdfgen.RDFGenerator attribute) (linkml.generators.shexgen.ShExGenerator attribute) (linkml.generators.sparqlgen.SparqlGenerator attribute) (linkml.generators.sqlddlgen.SQLDDLGenerator attribute) (linkml.generators.yumlgen.YumlGenerator attribute) (linkml.utils.generator.Generator attribute) visit_class() (linkml.generators.csvgen.CsvGenerator method) (linkml.generators.dotgen.DotGenerator method) (linkml.generators.golrgen.GolrSchemaGenerator method) (linkml.generators.graphqlgen.GraphqlGenerator method) (linkml.generators.jsonldcontextgen.ContextGenerator method) (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.lpgen.LogicProgramGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.generators.prefixmapgen.PrefixGenerator method) (linkml.generators.protogen.ProtoGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.sqlddlgen.SQLDDLGenerator method) (linkml.generators.summarygen.SummaryGenerator method) (linkml.utils.generator.Generator method)

visit_class_slot() (linkml.generators.dotgen.DotGenerator method) (linkml.generators.golrgen.GolrSchemaGenerator method) (linkml.generators.graphqlgen.GraphqlGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.lpgen.LogicProgramGenerator method) (linkml.generators.protogen.ProtoGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.sqlddlgen.SQLDDLGenerator method) (linkml.generators.summarygen.SummaryGenerator method) (linkml.utils.generator.Generator method) visit_enum() (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.utils.generator.Generator method) visit_schema() (linkml.generators.csvgen.CsvGenerator method) (linkml.generators.dotgen.DotGenerator method) (linkml.generators.golrgen.GolrSchemaGenerator method) (linkml.generators.jsonldcontextgen.ContextGenerator method) (linkml.generators.jsonschemagen.JsonSchemaGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.generators.prefixmapgen.PrefixGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.generators.shexgen.ShExGenerator method) (linkml.generators.summarygen.SummaryGenerator method) (linkml.generators.yumlgen.YumlGenerator method) (linkml.utils.generator.Generator method) visit_slot() (linkml.generators.jsonldcontextgen.ContextGenerator method) (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.generators.lpgen.LogicProgramGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.generators.prefixmapgen.PrefixGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.utils.generator.Generator method) visit_subset() (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.utils.generator.Generator method) visit_type() (linkml.generators.jsonldgen.JSONLDGenerator method) (linkml.generators.markdowngen.MarkdownGenerator method) (linkml.generators.owlgen.OwlSchemaGenerator method) (linkml.generators.pythongen.PythonGenerator method) (linkml.utils.generator.Generator method) visits_are_sorted (linkml.generators.owlgen.OwlSchemaGenerator attribute) (linkml.utils.generator.Generator attribute)

W

WARNING (linkml.reporting.model.SeverityOptions attribute)

weight (linkml.generators.golrgen.GOLRClass attribute) write_sqla_python_imperative() (linkml.generators.sqlddlgen.SQLDDLGenerator method)

X

xlink() (linkml.generators.markdowngen.MarkdownGenerator method)

Y

YAMLFILE gen-excel command line option gen-java command line option gen-json-schema command line option gen-markdown command line option gen-owl command line option gen-project command line option gen-python command line option gen-shex command line option gen-sparql command line option gen-sqlddl command line option

YAMLGenerator (class in linkml.generators.yamlgen), [1] YumlGenerator (class in linkml.generators.yumlgen)