linkml validate#
linkml validate#
Validate data according to a LinkML Schema
linkml validate [OPTIONS] [DATA_SOURCES]...
Options
- -s, --schema <schema>#
Schema file to validate data against
- -C, --target-class <target_class>#
Class within the schema to validate data against
- --config <config>#
Validation configuration YAML file.
- --exit-on-first-failure#
Exit after the first validation failure is found. If not specified all validation failures are reported.
- --legacy-mode#
Use legacy linkml-validate behavior.
- -m, --module <module>#
[DEPRECATED: only used in legacy mode] Path to python datamodel module
- -f, --input-format <input_format>#
[DEPRECATED: only used in legacy mode] Input format. Inferred from input suffix if not specified
- Options:
yml | yaml | json | rdf | ttl | json-ld | csv | tsv
- -S, --index-slot <index_slot>#
[DEPRECATED: only used in legacy mode] top level slot. Required for CSV dumping/loading
- --include-range-class-descendants, --no-range-class-descendants#
[DEPRECATED: only used in legacy mode] When handling range constraints, include all descendants of the range class instead of just the range class
- -D, --include-context, --no-include-context#
Include additional context when reporting of validation errors.
- Default:
False
- -V, --version#
Show the version and exit.
Arguments
- DATA_SOURCES#
Optional argument(s)
Plugins#
linkml validate jsonschema#
Validates instance data
linkml validate jsonschema [OPTIONS] INPUT
Options
- -m, --module <module>#
Path to python datamodel module
- -f, --input-format <input_format>#
Input format. Inferred from input suffix if not specified
- Options:
yml | yaml | json | rdf | ttl | json-ld | csv | tsv
- -C, --target-class <target_class>#
name of class in datamodel that the root node instantiates
- -S, --index-slot <index_slot>#
top level slot. Required for CSV dumping/loading
- -s, --schema <schema>#
Path to schema specified as LinkML yaml
- --exit-on-first-failure, --no-exit-on-first-failure#
Exit after the first validation failure is found. If not specified all validation failures are reported.
- --include-range-class-descendants, --no-range-class-descendants#
When handling range constraints, include all descendants of the range class instead of just the range class
- -V, --version#
Show the version and exit.
Arguments
- INPUT#
Required argument
linkml validate sparql#
Validates sparql
Example:
linkml-sparql-validate -U http://sparql.hegroup.org/sparql -s tests/test_validation/input/omo.yaml
linkml validate sparql [OPTIONS]
Options
- -G, --named-graph <named_graph>#
Constrain query to a named graph
- -i, --input <input>#
Input file to validate
- -U, --endpoint-url <endpoint_url>#
URL of sparql endpoint
- -L, --limit <limit>#
Max results per query
- -o, --output <output>#
Path to report file
- -f, --input-format <input_format>#
Input format. Inferred from input suffix if not specified
- Options:
yml | yaml | json | rdf | ttl | json-ld | csv | tsv
- -t, --output-format <output_format>#
Output format. Inferred from output suffix if not specified
- Options:
yml | yaml | json | rdf | ttl | json-ld | csv | tsv
- -s, --schema <schema>#
Path to schema specified as LinkML yaml
- -V, --version#
Show the version and exit.