SSSOM¶
Generation of Mappings in SSSOM (Simple Standard for Sharing Ontological Mappings) format
See also
SSSOM For details of the SSSOM standard
Docs¶
Command Line¶
gen-sssom¶
Generate SSSOM TSV to represent a LinkML model
gen-sssom [OPTIONS] YAMLFILE
Options
- -o, --output <output>¶
Output file name
- -V, --version¶
Show the version and exit.
- -f, --format <format>¶
Output format
- Default:
'tsv'- Options:
tsv
- --metadata, --no-metadata¶
Include metadata in output
- Default:
True
- --useuris, --metauris¶
Use class and slot URIs over model uris
- Default:
True
- -im, --importmap <importmap>¶
Import mapping file
- --log_level <log_level>¶
Logging level
- Default:
'WARNING'- Options:
CRITICAL | ERROR | WARNING | INFO | DEBUG
- -v, --verbose¶
Verbosity. Takes precedence over –log_level.
- --mergeimports, --no-mergeimports¶
Merge imports into source file (default=mergeimports)
- --stacktrace, --no-stacktrace¶
Print a stack trace when an error occurs
- Default:
False
Arguments
- YAMLFILE¶
Required argument