SSSOM

Generation of Mappings in SSSOM (Simple Standard for Sharing Ontological Mappings) format

See also

SSSOM For details of the SSSOM standard

Docs

Command Line

gen-sssom

Generate SSSOM TSV to represent a LinkML model

gen-sssom [OPTIONS] YAMLFILE

Options

-o, --output <output>

Output file name

-f, --format <format>

Output format

Default

tsv

Options

tsv

--metadata, --no-metadata

Include metadata in output

Default

True

--useuris, --metauris

Include metadata in output

Default

True

-im, --importmap <importmap>

Import mapping file

--log_level <log_level>

Logging level

Default

WARNING

Options

CRITICAL | ERROR | WARNING | INFO | DEBUG

-v, --verbose

verbosity

--mergeimports, --no-mergeimports

Merge imports into source file (default=mergeimports)

Arguments

YAMLFILE

Required argument

Code