SSSOM
Generation of Mappings in SSSOM (Simple Standard for Sharing Ontological Mappings) format
See also
SSSOM For details of the SSSOM standard
Docs
Command Line
gen-sssom
Generate SSSOM TSV to represent a LinkML model
gen-sssom [OPTIONS] YAMLFILE
Options
- -o, --output <output>
Output file name
- -f, --format <format>
Output format
- Default
tsv
- Options
tsv
- --metadata, --no-metadata
Include metadata in output
- Default
True
- --useuris, --metauris
Include metadata in output
- Default
True
- -im, --importmap <importmap>
Import mapping file
- --log_level <log_level>
Logging level
- Default
WARNING
- Options
CRITICAL | ERROR | WARNING | INFO | DEBUG
- -v, --verbose
verbosity
- --mergeimports, --no-mergeimports
Merge imports into source file (default=mergeimports)
Arguments
- YAMLFILE
Required argument