SSSOM#

Generation of Mappings in SSSOM (Simple Standard for Sharing Ontological Mappings) format

See also

SSSOM For details of the SSSOM standard

Docs#

Command Line#

gen-sssom#

Generate SSSOM TSV to represent a LinkML model

gen-sssom [OPTIONS] YAMLFILE

Options

-o, --output <output>#

Output file name

-V, --version#

Show the version and exit.

-f, --format <format>#

Output format

Default:

'tsv'

Options:

tsv

--metadata, --no-metadata#

Include metadata in output

Default:

True

--useuris, --metauris#

Use class and slot URIs over model uris

Default:

True

-im, --importmap <importmap>#

Import mapping file

--log_level <log_level>#

Logging level

Default:

'WARNING'

Options:

CRITICAL | ERROR | WARNING | INFO | DEBUG

-v, --verbose#

Verbosity. Takes precedence over –log_level.

--mergeimports, --no-mergeimports#

Merge imports into source file (default=mergeimports)

--stacktrace, --no-stacktrace#

Print a stack trace when an error occurs

Default:

False

Arguments

YAMLFILE#

Required argument

Code#