GitHub Organization

See github.com/linkml

  • linkml

    • generators

    • datautils

    • this documentation

  • linkml-model

    • self-describing linkml datamodel

    • note that you should not use this module programmatically - use linkml_runtime.linkml_model

  • linkml-runtime

    • code needed by linkml python object models

    • utility code such as schemaview

    • includes metamodel (linkml_runtime.linkml_model)

  • linkml-runtime-api NEW

    • extension to runtime to provide:

      • a change/patch API over data

      • a query API over data

  • linkml-model-enrichment

    • tools for bootstrapping schemas

      • from unstructured TSVs

      • from OWL ontologies

      • from JSON-Schema

    • tools for inferring enum ontology mappings using OLS and BioPortal

  • linkml-model-template

    • Project template for new LinkML datamodels

    • NOTE this may be replaced by a cookiecutter system soon