# Auto generated from meta.yaml by pythongen.py version: 0.0.1
# Generation date: 2024-06-27T23:15:25
# Schema: meta
#
# id: https://w3id.org/linkml/meta
# description: The metamodel for schemas defined using the Linked Data Modeling Language framework.
#
# For more information on LinkML:
#
# * [linkml.io](https://linkml.io) main website
# * [specification](https://w3id.org/linkml/docs/specification/)
#
# LinkML is self-describing. Every LinkML schema consists of elements
# that instantiate classes in this metamodel.
#
# Core metaclasses:
#
# * [SchemaDefinition](https://w3id.org/linkml/SchemaDefinition)
# * [ClassDefinition](https://w3id.org/linkml/ClassDefinition)
# * [SlotDefinition](https://w3id.org/linkml/SlotDefinition)
# * [TypeDefinition](https://w3id.org/linkml/TypeDefinition)
#
# There are many subsets of *profiles* of the metamodel, for different purposes:
#
# * [MinimalSubset](https://w3id.org/linkml/MinimalSubset)
# * [BasicSubset](https://w3id.org/linkml/BasicSubset)
#
# For canonical reference documentation on any metamodel construct,
# refer to the official URI for each construct, e.g.
# [https://w3id.org/linkml/is_a](https://w3id.org/linkml/is_a)
# license: https://creativecommons.org/publicdomain/zero/1.0/
from jsonasobj2 import as_dict
from typing import Optional, Union, ClassVar, Any
from dataclasses import dataclass
from linkml_runtime.utils.slot import Slot
from linkml_runtime.utils.metamodelcore import empty_list, empty_dict
from linkml_runtime.utils.yamlutils import YAMLRoot, extended_str
from linkml_runtime.utils.formatutils import sfx
from linkml_runtime.utils.enumerations import EnumDefinitionImpl
from rdflib import URIRef
from linkml_runtime.utils.curienamespace import CurieNamespace
from .annotations import Annotation, AnnotationTag
from .extensions import Extension, ExtensionTag
from .units import UnitOfMeasure
from linkml_runtime.utils.metamodelcore import Bool, NCName, URI, URIorCURIE, XSDDateTime
metamodel_version = "1.7.0"
version = None
# Namespaces
IAO = CurieNamespace('IAO', 'http://purl.obolibrary.org/obo/IAO_')
NCIT = CurieNamespace('NCIT', 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#')
OIO = CurieNamespace('OIO', 'http://www.geneontology.org/formats/oboInOwl#')
SIO = CurieNamespace('SIO', 'http://semanticscience.org/resource/SIO_')
BIBO = CurieNamespace('bibo', 'http://purl.org/ontology/bibo/')
CDISC = CurieNamespace('cdisc', 'http://rdf.cdisc.org/mms#')
DCTERMS = CurieNamespace('dcterms', 'http://purl.org/dc/terms/')
LINKML = CurieNamespace('linkml', 'https://w3id.org/linkml/')
OSLC = CurieNamespace('oslc', 'http://open-services.net/ns/core#')
OWL = CurieNamespace('owl', 'http://www.w3.org/2002/07/owl#')
PAV = CurieNamespace('pav', 'http://purl.org/pav/')
PROV = CurieNamespace('prov', 'http://www.w3.org/ns/prov#')
QB = CurieNamespace('qb', 'http://purl.org/linked-data/cube#')
QUDT = CurieNamespace('qudt', 'http://qudt.org/schema/qudt/')
RDF = CurieNamespace('rdf', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#')
RDFS = CurieNamespace('rdfs', 'http://www.w3.org/2000/01/rdf-schema#')
SCHEMA = CurieNamespace('schema', 'http://schema.org/')
SH = CurieNamespace('sh', 'http://www.w3.org/ns/shacl#')
SKOS = CurieNamespace('skos', 'http://www.w3.org/2004/02/skos/core#')
SKOSXL = CurieNamespace('skosxl', 'http://www.w3.org/2008/05/skos-xl#')
SWRL = CurieNamespace('swrl', 'http://www.w3.org/2003/11/swrl#')
VANN = CurieNamespace('vann', 'https://vocab.org/vann/')
XSD = CurieNamespace('xsd', 'http://www.w3.org/2001/XMLSchema#')
DEFAULT_ = LINKML
# Types
# Class references
class ElementName(extended_str):
pass
class SchemaDefinitionName(NCName):
pass
class TypeDefinitionName(ElementName):
pass
class SubsetDefinitionName(ElementName):
pass
class DefinitionName(ElementName):
pass
class EnumDefinitionName(DefinitionName):
pass
class SlotDefinitionName(DefinitionName):
pass
class ClassDefinitionName(DefinitionName):
pass
class SettingSettingKey(NCName):
pass
class PrefixPrefixPrefix(NCName):
pass
class LocalNameLocalNameSource(NCName):
pass
class AltDescriptionSource(extended_str):
pass
class PermissibleValueText(extended_str):
pass
class UniqueKeyUniqueKeyName(extended_str):
pass
class TypeMappingFramework(extended_str):
pass
Anything = Any
@dataclass(repr=False)
class CommonMetadata(YAMLRoot):
"""
Generic metadata shared across definitions
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["CommonMetadata"]
class_class_curie: ClassVar[str] = "linkml:CommonMetadata"
class_name: ClassVar[str] = "common_metadata"
class_model_uri: ClassVar[URIRef] = LINKML.CommonMetadata
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, "AltDescription"]], list[Union[dict, "AltDescription"]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, "Example"], list[Union[dict, "Example"]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, "StructuredAlias"], list[Union[dict, "StructuredAlias"]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class Element(YAMLRoot):
"""
A named element in the model
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["Element"]
class_class_curie: ClassVar[str] = "linkml:Element"
class_name: ClassVar[str] = "element"
class_model_uri: ClassVar[URIRef] = LINKML.Element
name: Union[str, ElementName] = None
id_prefixes: Optional[Union[Union[str, NCName], list[Union[str, NCName]]]] = empty_list()
id_prefixes_are_closed: Optional[Union[bool, Bool]] = None
definition_uri: Optional[Union[str, URIorCURIE]] = None
local_names: Optional[Union[dict[Union[str, LocalNameLocalNameSource], Union[dict, "LocalName"]], list[Union[dict, "LocalName"]]]] = empty_dict()
conforms_to: Optional[str] = None
implements: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
instantiates: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, "AltDescription"]], list[Union[dict, "AltDescription"]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, "Example"], list[Union[dict, "Example"]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, "StructuredAlias"], list[Union[dict, "StructuredAlias"]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.name):
self.MissingRequiredField("name")
if not isinstance(self.name, ElementName):
self.name = ElementName(self.name)
if not isinstance(self.id_prefixes, list):
self.id_prefixes = [self.id_prefixes] if self.id_prefixes is not None else []
self.id_prefixes = [v if isinstance(v, NCName) else NCName(v) for v in self.id_prefixes]
if self.id_prefixes_are_closed is not None and not isinstance(self.id_prefixes_are_closed, Bool):
self.id_prefixes_are_closed = Bool(self.id_prefixes_are_closed)
if self.definition_uri is not None and not isinstance(self.definition_uri, URIorCURIE):
self.definition_uri = URIorCURIE(self.definition_uri)
self._normalize_inlined_as_dict(slot_name="local_names", slot_type=LocalName, key_name="local_name_source", keyed=True)
if self.conforms_to is not None and not isinstance(self.conforms_to, str):
self.conforms_to = str(self.conforms_to)
if not isinstance(self.implements, list):
self.implements = [self.implements] if self.implements is not None else []
self.implements = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.implements]
if not isinstance(self.instantiates, list):
self.instantiates = [self.instantiates] if self.instantiates is not None else []
self.instantiates = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.instantiates]
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
[docs]@dataclass(repr=False)
class SchemaDefinition(Element):
"""
A collection of definitions that make up a schema or a data model.
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["SchemaDefinition"]
class_class_curie: ClassVar[str] = "linkml:SchemaDefinition"
class_name: ClassVar[str] = "schema_definition"
class_model_uri: ClassVar[URIRef] = LINKML.SchemaDefinition
name: Union[str, SchemaDefinitionName] = None
id: Union[str, URI] = None
version: Optional[str] = None
imports: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
license: Optional[str] = None
prefixes: Optional[Union[dict[Union[str, PrefixPrefixPrefix], Union[dict, "Prefix"]], list[Union[dict, "Prefix"]]]] = empty_dict()
emit_prefixes: Optional[Union[Union[str, NCName], list[Union[str, NCName]]]] = empty_list()
default_curi_maps: Optional[Union[str, list[str]]] = empty_list()
default_prefix: Optional[str] = None
default_range: Optional[Union[str, TypeDefinitionName]] = None
subsets: Optional[Union[dict[Union[str, SubsetDefinitionName], Union[dict, "SubsetDefinition"]], list[Union[dict, "SubsetDefinition"]]]] = empty_dict()
types: Optional[Union[dict[Union[str, TypeDefinitionName], Union[dict, "TypeDefinition"]], list[Union[dict, "TypeDefinition"]]]] = empty_dict()
enums: Optional[Union[dict[Union[str, EnumDefinitionName], Union[dict, "EnumDefinition"]], list[Union[dict, "EnumDefinition"]]]] = empty_dict()
slots: Optional[Union[dict[Union[str, SlotDefinitionName], Union[dict, "SlotDefinition"]], list[Union[dict, "SlotDefinition"]]]] = empty_dict()
classes: Optional[Union[dict[Union[str, ClassDefinitionName], Union[dict, "ClassDefinition"]], list[Union[dict, "ClassDefinition"]]]] = empty_dict()
metamodel_version: Optional[str] = None
source_file: Optional[str] = None
source_file_date: Optional[Union[str, XSDDateTime]] = None
source_file_size: Optional[int] = None
generation_date: Optional[Union[str, XSDDateTime]] = None
slot_names_unique: Optional[Union[bool, Bool]] = None
settings: Optional[Union[dict[Union[str, SettingSettingKey], Union[dict, "Setting"]], list[Union[dict, "Setting"]]]] = empty_dict()
bindings: Optional[Union[Union[dict, "EnumBinding"], list[Union[dict, "EnumBinding"]]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.default_prefix is None:
self.default_prefix = sfx(str(self.id))
if self._is_empty(self.name):
self.MissingRequiredField("name")
if not isinstance(self.name, SchemaDefinitionName):
self.name = SchemaDefinitionName(self.name)
if self._is_empty(self.id):
self.MissingRequiredField("id")
if not isinstance(self.id, URI):
self.id = URI(self.id)
if self.version is not None and not isinstance(self.version, str):
self.version = str(self.version)
if not isinstance(self.imports, list):
self.imports = [self.imports] if self.imports is not None else []
self.imports = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.imports]
if self.license is not None and not isinstance(self.license, str):
self.license = str(self.license)
self._normalize_inlined_as_dict(slot_name="prefixes", slot_type=Prefix, key_name="prefix_prefix", keyed=True)
if not isinstance(self.emit_prefixes, list):
self.emit_prefixes = [self.emit_prefixes] if self.emit_prefixes is not None else []
self.emit_prefixes = [v if isinstance(v, NCName) else NCName(v) for v in self.emit_prefixes]
if not isinstance(self.default_curi_maps, list):
self.default_curi_maps = [self.default_curi_maps] if self.default_curi_maps is not None else []
self.default_curi_maps = [v if isinstance(v, str) else str(v) for v in self.default_curi_maps]
if self.default_prefix is not None and not isinstance(self.default_prefix, str):
self.default_prefix = str(self.default_prefix)
if self.default_range is not None and not isinstance(self.default_range, TypeDefinitionName):
self.default_range = TypeDefinitionName(self.default_range)
self._normalize_inlined_as_dict(slot_name="subsets", slot_type=SubsetDefinition, key_name="name", keyed=True)
self._normalize_inlined_as_dict(slot_name="types", slot_type=TypeDefinition, key_name="name", keyed=True)
self._normalize_inlined_as_dict(slot_name="enums", slot_type=EnumDefinition, key_name="name", keyed=True)
self._normalize_inlined_as_dict(slot_name="slots", slot_type=SlotDefinition, key_name="name", keyed=True)
self._normalize_inlined_as_dict(slot_name="classes", slot_type=ClassDefinition, key_name="name", keyed=True)
if self.metamodel_version is not None and not isinstance(self.metamodel_version, str):
self.metamodel_version = str(self.metamodel_version)
if self.source_file is not None and not isinstance(self.source_file, str):
self.source_file = str(self.source_file)
if self.source_file_date is not None and not isinstance(self.source_file_date, XSDDateTime):
self.source_file_date = XSDDateTime(self.source_file_date)
if self.source_file_size is not None and not isinstance(self.source_file_size, int):
self.source_file_size = int(self.source_file_size)
if self.generation_date is not None and not isinstance(self.generation_date, XSDDateTime):
self.generation_date = XSDDateTime(self.generation_date)
if self.slot_names_unique is not None and not isinstance(self.slot_names_unique, Bool):
self.slot_names_unique = Bool(self.slot_names_unique)
self._normalize_inlined_as_dict(slot_name="settings", slot_type=Setting, key_name="setting_key", keyed=True)
if not isinstance(self.bindings, list):
self.bindings = [self.bindings] if self.bindings is not None else []
self.bindings = [v if isinstance(v, EnumBinding) else EnumBinding(**as_dict(v)) for v in self.bindings]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class AnonymousTypeExpression(YAMLRoot):
"""
A type expression that is not a top-level named type definition. Used for nesting.
"""
_inherited_slots: ClassVar[list[str]] = ["pattern", "structured_pattern", "equals_string", "equals_string_in", "equals_number", "minimum_value", "maximum_value"]
class_class_uri: ClassVar[URIRef] = LINKML["AnonymousTypeExpression"]
class_class_curie: ClassVar[str] = "linkml:AnonymousTypeExpression"
class_name: ClassVar[str] = "anonymous_type_expression"
class_model_uri: ClassVar[URIRef] = LINKML.AnonymousTypeExpression
pattern: Optional[str] = None
structured_pattern: Optional[Union[dict, "PatternExpression"]] = None
unit: Optional[Union[dict, UnitOfMeasure]] = None
implicit_prefix: Optional[str] = None
equals_string: Optional[str] = None
equals_string_in: Optional[Union[str, list[str]]] = empty_list()
equals_number: Optional[int] = None
minimum_value: Optional[Union[dict, Anything]] = None
maximum_value: Optional[Union[dict, Anything]] = None
none_of: Optional[Union[Union[dict, "AnonymousTypeExpression"], list[Union[dict, "AnonymousTypeExpression"]]]] = empty_list()
exactly_one_of: Optional[Union[Union[dict, "AnonymousTypeExpression"], list[Union[dict, "AnonymousTypeExpression"]]]] = empty_list()
any_of: Optional[Union[Union[dict, "AnonymousTypeExpression"], list[Union[dict, "AnonymousTypeExpression"]]]] = empty_list()
all_of: Optional[Union[Union[dict, "AnonymousTypeExpression"], list[Union[dict, "AnonymousTypeExpression"]]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.pattern is not None and not isinstance(self.pattern, str):
self.pattern = str(self.pattern)
if self.structured_pattern is not None and not isinstance(self.structured_pattern, PatternExpression):
self.structured_pattern = PatternExpression(**as_dict(self.structured_pattern))
if self.unit is not None and not isinstance(self.unit, UnitOfMeasure):
self.unit = UnitOfMeasure(**as_dict(self.unit))
if self.implicit_prefix is not None and not isinstance(self.implicit_prefix, str):
self.implicit_prefix = str(self.implicit_prefix)
if self.equals_string is not None and not isinstance(self.equals_string, str):
self.equals_string = str(self.equals_string)
if not isinstance(self.equals_string_in, list):
self.equals_string_in = [self.equals_string_in] if self.equals_string_in is not None else []
self.equals_string_in = [v if isinstance(v, str) else str(v) for v in self.equals_string_in]
if self.equals_number is not None and not isinstance(self.equals_number, int):
self.equals_number = int(self.equals_number)
if not isinstance(self.none_of, list):
self.none_of = [self.none_of] if self.none_of is not None else []
self.none_of = [v if isinstance(v, AnonymousTypeExpression) else AnonymousTypeExpression(**as_dict(v)) for v in self.none_of]
if not isinstance(self.exactly_one_of, list):
self.exactly_one_of = [self.exactly_one_of] if self.exactly_one_of is not None else []
self.exactly_one_of = [v if isinstance(v, AnonymousTypeExpression) else AnonymousTypeExpression(**as_dict(v)) for v in self.exactly_one_of]
if not isinstance(self.any_of, list):
self.any_of = [self.any_of] if self.any_of is not None else []
self.any_of = [v if isinstance(v, AnonymousTypeExpression) else AnonymousTypeExpression(**as_dict(v)) for v in self.any_of]
if not isinstance(self.all_of, list):
self.all_of = [self.all_of] if self.all_of is not None else []
self.all_of = [v if isinstance(v, AnonymousTypeExpression) else AnonymousTypeExpression(**as_dict(v)) for v in self.all_of]
super().__post_init__(**kwargs)
[docs]@dataclass(repr=False)
class TypeDefinition(Element):
"""
an element that whose instances are atomic scalar values that can be mapped to primitive types
"""
_inherited_slots: ClassVar[list[str]] = ["base", "uri", "repr", "pattern", "structured_pattern", "equals_string", "equals_string_in", "equals_number", "minimum_value", "maximum_value"]
class_class_uri: ClassVar[URIRef] = LINKML["TypeDefinition"]
class_class_curie: ClassVar[str] = "linkml:TypeDefinition"
class_name: ClassVar[str] = "type_definition"
class_model_uri: ClassVar[URIRef] = LINKML.TypeDefinition
name: Union[str, TypeDefinitionName] = None
typeof: Optional[Union[str, TypeDefinitionName]] = None
base: Optional[str] = None
uri: Optional[Union[str, URIorCURIE]] = None
repr: Optional[str] = None
union_of: Optional[Union[Union[str, TypeDefinitionName], list[Union[str, TypeDefinitionName]]]] = empty_list()
pattern: Optional[str] = None
structured_pattern: Optional[Union[dict, "PatternExpression"]] = None
unit: Optional[Union[dict, UnitOfMeasure]] = None
implicit_prefix: Optional[str] = None
equals_string: Optional[str] = None
equals_string_in: Optional[Union[str, list[str]]] = empty_list()
equals_number: Optional[int] = None
minimum_value: Optional[Union[dict, Anything]] = None
maximum_value: Optional[Union[dict, Anything]] = None
none_of: Optional[Union[Union[dict, AnonymousTypeExpression], list[Union[dict, AnonymousTypeExpression]]]] = empty_list()
exactly_one_of: Optional[Union[Union[dict, AnonymousTypeExpression], list[Union[dict, AnonymousTypeExpression]]]] = empty_list()
any_of: Optional[Union[Union[dict, AnonymousTypeExpression], list[Union[dict, AnonymousTypeExpression]]]] = empty_list()
all_of: Optional[Union[Union[dict, AnonymousTypeExpression], list[Union[dict, AnonymousTypeExpression]]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.name):
self.MissingRequiredField("name")
if not isinstance(self.name, TypeDefinitionName):
self.name = TypeDefinitionName(self.name)
if self.typeof is not None and not isinstance(self.typeof, TypeDefinitionName):
self.typeof = TypeDefinitionName(self.typeof)
if self.base is not None and not isinstance(self.base, str):
self.base = str(self.base)
if self.uri is not None and not isinstance(self.uri, URIorCURIE):
self.uri = URIorCURIE(self.uri)
if self.repr is not None and not isinstance(self.repr, str):
self.repr = str(self.repr)
if not isinstance(self.union_of, list):
self.union_of = [self.union_of] if self.union_of is not None else []
self.union_of = [v if isinstance(v, TypeDefinitionName) else TypeDefinitionName(v) for v in self.union_of]
if self.pattern is not None and not isinstance(self.pattern, str):
self.pattern = str(self.pattern)
if self.structured_pattern is not None and not isinstance(self.structured_pattern, PatternExpression):
self.structured_pattern = PatternExpression(**as_dict(self.structured_pattern))
if self.unit is not None and not isinstance(self.unit, UnitOfMeasure):
self.unit = UnitOfMeasure(**as_dict(self.unit))
if self.implicit_prefix is not None and not isinstance(self.implicit_prefix, str):
self.implicit_prefix = str(self.implicit_prefix)
if self.equals_string is not None and not isinstance(self.equals_string, str):
self.equals_string = str(self.equals_string)
if not isinstance(self.equals_string_in, list):
self.equals_string_in = [self.equals_string_in] if self.equals_string_in is not None else []
self.equals_string_in = [v if isinstance(v, str) else str(v) for v in self.equals_string_in]
if self.equals_number is not None and not isinstance(self.equals_number, int):
self.equals_number = int(self.equals_number)
if not isinstance(self.none_of, list):
self.none_of = [self.none_of] if self.none_of is not None else []
self.none_of = [v if isinstance(v, AnonymousTypeExpression) else AnonymousTypeExpression(**as_dict(v)) for v in self.none_of]
if not isinstance(self.exactly_one_of, list):
self.exactly_one_of = [self.exactly_one_of] if self.exactly_one_of is not None else []
self.exactly_one_of = [v if isinstance(v, AnonymousTypeExpression) else AnonymousTypeExpression(**as_dict(v)) for v in self.exactly_one_of]
if not isinstance(self.any_of, list):
self.any_of = [self.any_of] if self.any_of is not None else []
self.any_of = [v if isinstance(v, AnonymousTypeExpression) else AnonymousTypeExpression(**as_dict(v)) for v in self.any_of]
if not isinstance(self.all_of, list):
self.all_of = [self.all_of] if self.all_of is not None else []
self.all_of = [v if isinstance(v, AnonymousTypeExpression) else AnonymousTypeExpression(**as_dict(v)) for v in self.all_of]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class SubsetDefinition(Element):
"""
an element that can be used to group other metamodel elements
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["SubsetDefinition"]
class_class_curie: ClassVar[str] = "linkml:SubsetDefinition"
class_name: ClassVar[str] = "subset_definition"
class_model_uri: ClassVar[URIRef] = LINKML.SubsetDefinition
name: Union[str, SubsetDefinitionName] = None
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.name):
self.MissingRequiredField("name")
if not isinstance(self.name, SubsetDefinitionName):
self.name = SubsetDefinitionName(self.name)
super().__post_init__(**kwargs)
@dataclass(repr=False)
class Definition(Element):
"""
abstract base class for core metaclasses
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["Definition"]
class_class_curie: ClassVar[str] = "linkml:Definition"
class_name: ClassVar[str] = "definition"
class_model_uri: ClassVar[URIRef] = LINKML.Definition
name: Union[str, DefinitionName] = None
is_a: Optional[Union[str, DefinitionName]] = None
abstract: Optional[Union[bool, Bool]] = None
mixin: Optional[Union[bool, Bool]] = None
mixins: Optional[Union[Union[str, DefinitionName], list[Union[str, DefinitionName]]]] = empty_list()
apply_to: Optional[Union[Union[str, DefinitionName], list[Union[str, DefinitionName]]]] = empty_list()
values_from: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
string_serialization: Optional[str] = None
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.is_a is not None and not isinstance(self.is_a, DefinitionName):
self.is_a = DefinitionName(self.is_a)
if self.abstract is not None and not isinstance(self.abstract, Bool):
self.abstract = Bool(self.abstract)
if self.mixin is not None and not isinstance(self.mixin, Bool):
self.mixin = Bool(self.mixin)
if not isinstance(self.mixins, list):
self.mixins = [self.mixins] if self.mixins is not None else []
self.mixins = [v if isinstance(v, DefinitionName) else DefinitionName(v) for v in self.mixins]
if not isinstance(self.apply_to, list):
self.apply_to = [self.apply_to] if self.apply_to is not None else []
self.apply_to = [v if isinstance(v, DefinitionName) else DefinitionName(v) for v in self.apply_to]
if not isinstance(self.values_from, list):
self.values_from = [self.values_from] if self.values_from is not None else []
self.values_from = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.values_from]
if self.string_serialization is not None and not isinstance(self.string_serialization, str):
self.string_serialization = str(self.string_serialization)
super().__post_init__(**kwargs)
@dataclass(repr=False)
class AnonymousEnumExpression(YAMLRoot):
"""
An enum_expression that is not named
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["AnonymousEnumExpression"]
class_class_curie: ClassVar[str] = "linkml:AnonymousEnumExpression"
class_name: ClassVar[str] = "anonymous_enum_expression"
class_model_uri: ClassVar[URIRef] = LINKML.AnonymousEnumExpression
code_set: Optional[Union[str, URIorCURIE]] = None
code_set_tag: Optional[str] = None
code_set_version: Optional[str] = None
pv_formula: Optional[Union[str, "PvFormulaOptions"]] = None
permissible_values: Optional[Union[dict[Union[str, PermissibleValueText], Union[dict, "PermissibleValue"]], list[Union[dict, "PermissibleValue"]]]] = empty_dict()
include: Optional[Union[Union[dict, "AnonymousEnumExpression"], list[Union[dict, "AnonymousEnumExpression"]]]] = empty_list()
minus: Optional[Union[Union[dict, "AnonymousEnumExpression"], list[Union[dict, "AnonymousEnumExpression"]]]] = empty_list()
inherits: Optional[Union[Union[str, EnumDefinitionName], list[Union[str, EnumDefinitionName]]]] = empty_list()
reachable_from: Optional[Union[dict, "ReachabilityQuery"]] = None
matches: Optional[Union[dict, "MatchQuery"]] = None
concepts: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.code_set is not None and not isinstance(self.code_set, URIorCURIE):
self.code_set = URIorCURIE(self.code_set)
if self.code_set_tag is not None and not isinstance(self.code_set_tag, str):
self.code_set_tag = str(self.code_set_tag)
if self.code_set_version is not None and not isinstance(self.code_set_version, str):
self.code_set_version = str(self.code_set_version)
if self.pv_formula is not None and not isinstance(self.pv_formula, PvFormulaOptions):
self.pv_formula = PvFormulaOptions(self.pv_formula)
self._normalize_inlined_as_dict(slot_name="permissible_values", slot_type=PermissibleValue, key_name="text", keyed=True)
if not isinstance(self.include, list):
self.include = [self.include] if self.include is not None else []
self.include = [v if isinstance(v, AnonymousEnumExpression) else AnonymousEnumExpression(**as_dict(v)) for v in self.include]
if not isinstance(self.minus, list):
self.minus = [self.minus] if self.minus is not None else []
self.minus = [v if isinstance(v, AnonymousEnumExpression) else AnonymousEnumExpression(**as_dict(v)) for v in self.minus]
if not isinstance(self.inherits, list):
self.inherits = [self.inherits] if self.inherits is not None else []
self.inherits = [v if isinstance(v, EnumDefinitionName) else EnumDefinitionName(v) for v in self.inherits]
if self.reachable_from is not None and not isinstance(self.reachable_from, ReachabilityQuery):
self.reachable_from = ReachabilityQuery(**as_dict(self.reachable_from))
if self.matches is not None and not isinstance(self.matches, MatchQuery):
self.matches = MatchQuery(**as_dict(self.matches))
if not isinstance(self.concepts, list):
self.concepts = [self.concepts] if self.concepts is not None else []
self.concepts = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.concepts]
super().__post_init__(**kwargs)
[docs]@dataclass(repr=False)
class EnumDefinition(Definition):
"""
an element whose instances must be drawn from a specified set of permissible values
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["EnumDefinition"]
class_class_curie: ClassVar[str] = "linkml:EnumDefinition"
class_name: ClassVar[str] = "enum_definition"
class_model_uri: ClassVar[URIRef] = LINKML.EnumDefinition
name: Union[str, EnumDefinitionName] = None
enum_uri: Optional[Union[str, URIorCURIE]] = None
code_set: Optional[Union[str, URIorCURIE]] = None
code_set_tag: Optional[str] = None
code_set_version: Optional[str] = None
pv_formula: Optional[Union[str, "PvFormulaOptions"]] = None
permissible_values: Optional[Union[dict[Union[str, PermissibleValueText], Union[dict, "PermissibleValue"]], list[Union[dict, "PermissibleValue"]]]] = empty_dict()
include: Optional[Union[Union[dict, AnonymousEnumExpression], list[Union[dict, AnonymousEnumExpression]]]] = empty_list()
minus: Optional[Union[Union[dict, AnonymousEnumExpression], list[Union[dict, AnonymousEnumExpression]]]] = empty_list()
inherits: Optional[Union[Union[str, EnumDefinitionName], list[Union[str, EnumDefinitionName]]]] = empty_list()
reachable_from: Optional[Union[dict, "ReachabilityQuery"]] = None
matches: Optional[Union[dict, "MatchQuery"]] = None
concepts: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.name):
self.MissingRequiredField("name")
if not isinstance(self.name, EnumDefinitionName):
self.name = EnumDefinitionName(self.name)
if self.enum_uri is not None and not isinstance(self.enum_uri, URIorCURIE):
self.enum_uri = URIorCURIE(self.enum_uri)
if self.code_set is not None and not isinstance(self.code_set, URIorCURIE):
self.code_set = URIorCURIE(self.code_set)
if self.code_set_tag is not None and not isinstance(self.code_set_tag, str):
self.code_set_tag = str(self.code_set_tag)
if self.code_set_version is not None and not isinstance(self.code_set_version, str):
self.code_set_version = str(self.code_set_version)
if self.pv_formula is not None and not isinstance(self.pv_formula, PvFormulaOptions):
self.pv_formula = PvFormulaOptions(self.pv_formula)
self._normalize_inlined_as_dict(slot_name="permissible_values", slot_type=PermissibleValue, key_name="text", keyed=True)
if not isinstance(self.include, list):
self.include = [self.include] if self.include is not None else []
self.include = [v if isinstance(v, AnonymousEnumExpression) else AnonymousEnumExpression(**as_dict(v)) for v in self.include]
if not isinstance(self.minus, list):
self.minus = [self.minus] if self.minus is not None else []
self.minus = [v if isinstance(v, AnonymousEnumExpression) else AnonymousEnumExpression(**as_dict(v)) for v in self.minus]
if not isinstance(self.inherits, list):
self.inherits = [self.inherits] if self.inherits is not None else []
self.inherits = [v if isinstance(v, EnumDefinitionName) else EnumDefinitionName(v) for v in self.inherits]
if self.reachable_from is not None and not isinstance(self.reachable_from, ReachabilityQuery):
self.reachable_from = ReachabilityQuery(**as_dict(self.reachable_from))
if self.matches is not None and not isinstance(self.matches, MatchQuery):
self.matches = MatchQuery(**as_dict(self.matches))
if not isinstance(self.concepts, list):
self.concepts = [self.concepts] if self.concepts is not None else []
self.concepts = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.concepts]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class EnumBinding(YAMLRoot):
"""
A binding of a slot or a class to a permissible value from an enumeration.
"""
_inherited_slots: ClassVar[list[str]] = ["range"]
class_class_uri: ClassVar[URIRef] = LINKML["EnumBinding"]
class_class_curie: ClassVar[str] = "linkml:EnumBinding"
class_name: ClassVar[str] = "enum_binding"
class_model_uri: ClassVar[URIRef] = LINKML.EnumBinding
range: Optional[Union[str, EnumDefinitionName]] = None
obligation_level: Optional[Union[str, "ObligationLevelEnum"]] = None
binds_value_of: Optional[str] = None
pv_formula: Optional[Union[str, "PvFormulaOptions"]] = None
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, "AltDescription"]], list[Union[dict, "AltDescription"]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, "Example"], list[Union[dict, "Example"]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, "StructuredAlias"], list[Union[dict, "StructuredAlias"]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.range is not None and not isinstance(self.range, EnumDefinitionName):
self.range = EnumDefinitionName(self.range)
if self.obligation_level is not None and not isinstance(self.obligation_level, ObligationLevelEnum):
self.obligation_level = ObligationLevelEnum(self.obligation_level)
if self.binds_value_of is not None and not isinstance(self.binds_value_of, str):
self.binds_value_of = str(self.binds_value_of)
if self.pv_formula is not None and not isinstance(self.pv_formula, PvFormulaOptions):
self.pv_formula = PvFormulaOptions(self.pv_formula)
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class MatchQuery(YAMLRoot):
"""
A query that is used on an enum expression to dynamically obtain a set of permissivle values via a query that
matches on properties of the external concepts.
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["MatchQuery"]
class_class_curie: ClassVar[str] = "linkml:MatchQuery"
class_name: ClassVar[str] = "match_query"
class_model_uri: ClassVar[URIRef] = LINKML.MatchQuery
identifier_pattern: Optional[str] = None
source_ontology: Optional[Union[str, URIorCURIE]] = None
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.identifier_pattern is not None and not isinstance(self.identifier_pattern, str):
self.identifier_pattern = str(self.identifier_pattern)
if self.source_ontology is not None and not isinstance(self.source_ontology, URIorCURIE):
self.source_ontology = URIorCURIE(self.source_ontology)
super().__post_init__(**kwargs)
@dataclass(repr=False)
class ReachabilityQuery(YAMLRoot):
"""
A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a
set of source nodes to a set of descendants or ancestors over a set of relationship types.
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["ReachabilityQuery"]
class_class_curie: ClassVar[str] = "linkml:ReachabilityQuery"
class_name: ClassVar[str] = "reachability_query"
class_model_uri: ClassVar[URIRef] = LINKML.ReachabilityQuery
source_ontology: Optional[Union[str, URIorCURIE]] = None
source_nodes: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
relationship_types: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
is_direct: Optional[Union[bool, Bool]] = None
include_self: Optional[Union[bool, Bool]] = None
traverse_up: Optional[Union[bool, Bool]] = None
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.source_ontology is not None and not isinstance(self.source_ontology, URIorCURIE):
self.source_ontology = URIorCURIE(self.source_ontology)
if not isinstance(self.source_nodes, list):
self.source_nodes = [self.source_nodes] if self.source_nodes is not None else []
self.source_nodes = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.source_nodes]
if not isinstance(self.relationship_types, list):
self.relationship_types = [self.relationship_types] if self.relationship_types is not None else []
self.relationship_types = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.relationship_types]
if self.is_direct is not None and not isinstance(self.is_direct, Bool):
self.is_direct = Bool(self.is_direct)
if self.include_self is not None and not isinstance(self.include_self, Bool):
self.include_self = Bool(self.include_self)
if self.traverse_up is not None and not isinstance(self.traverse_up, Bool):
self.traverse_up = Bool(self.traverse_up)
super().__post_init__(**kwargs)
@dataclass(repr=False)
class StructuredAlias(YAMLRoot):
"""
object that contains meta data about a synonym or alias including where it came from (source) and its scope
(narrow, broad, etc.)
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = SKOSXL["Label"]
class_class_curie: ClassVar[str] = "skosxl:Label"
class_name: ClassVar[str] = "structured_alias"
class_model_uri: ClassVar[URIRef] = LINKML.StructuredAlias
literal_form: str = None
predicate: Optional[Union[str, "AliasPredicateEnum"]] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
contexts: Optional[Union[Union[str, URI], list[Union[str, URI]]]] = empty_list()
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, "AltDescription"]], list[Union[dict, "AltDescription"]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, "Example"], list[Union[dict, "Example"]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, "StructuredAlias"], list[Union[dict, "StructuredAlias"]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.literal_form):
self.MissingRequiredField("literal_form")
if not isinstance(self.literal_form, str):
self.literal_form = str(self.literal_form)
if self.predicate is not None and not isinstance(self.predicate, AliasPredicateEnum):
self.predicate = AliasPredicateEnum(self.predicate)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.contexts, list):
self.contexts = [self.contexts] if self.contexts is not None else []
self.contexts = [v if isinstance(v, URI) else URI(v) for v in self.contexts]
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
class Expression(YAMLRoot):
"""
general mixin for any class that can represent some form of expression
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["Expression"]
class_class_curie: ClassVar[str] = "linkml:Expression"
class_name: ClassVar[str] = "expression"
class_model_uri: ClassVar[URIRef] = LINKML.Expression
@dataclass(repr=False)
class TypeExpression(Expression):
"""
An abstract class grouping named types and anonymous type expressions
"""
_inherited_slots: ClassVar[list[str]] = ["pattern", "structured_pattern", "equals_string", "equals_string_in", "equals_number", "minimum_value", "maximum_value"]
class_class_uri: ClassVar[URIRef] = LINKML["TypeExpression"]
class_class_curie: ClassVar[str] = "linkml:TypeExpression"
class_name: ClassVar[str] = "type_expression"
class_model_uri: ClassVar[URIRef] = LINKML.TypeExpression
pattern: Optional[str] = None
structured_pattern: Optional[Union[dict, "PatternExpression"]] = None
unit: Optional[Union[dict, UnitOfMeasure]] = None
implicit_prefix: Optional[str] = None
equals_string: Optional[str] = None
equals_string_in: Optional[Union[str, list[str]]] = empty_list()
equals_number: Optional[int] = None
minimum_value: Optional[Union[dict, Anything]] = None
maximum_value: Optional[Union[dict, Anything]] = None
none_of: Optional[Union[Union[dict, "AnonymousTypeExpression"], list[Union[dict, "AnonymousTypeExpression"]]]] = empty_list()
exactly_one_of: Optional[Union[Union[dict, "AnonymousTypeExpression"], list[Union[dict, "AnonymousTypeExpression"]]]] = empty_list()
any_of: Optional[Union[Union[dict, "AnonymousTypeExpression"], list[Union[dict, "AnonymousTypeExpression"]]]] = empty_list()
all_of: Optional[Union[Union[dict, "AnonymousTypeExpression"], list[Union[dict, "AnonymousTypeExpression"]]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.pattern is not None and not isinstance(self.pattern, str):
self.pattern = str(self.pattern)
if self.structured_pattern is not None and not isinstance(self.structured_pattern, PatternExpression):
self.structured_pattern = PatternExpression(**as_dict(self.structured_pattern))
if self.unit is not None and not isinstance(self.unit, UnitOfMeasure):
self.unit = UnitOfMeasure(**as_dict(self.unit))
if self.implicit_prefix is not None and not isinstance(self.implicit_prefix, str):
self.implicit_prefix = str(self.implicit_prefix)
if self.equals_string is not None and not isinstance(self.equals_string, str):
self.equals_string = str(self.equals_string)
if not isinstance(self.equals_string_in, list):
self.equals_string_in = [self.equals_string_in] if self.equals_string_in is not None else []
self.equals_string_in = [v if isinstance(v, str) else str(v) for v in self.equals_string_in]
if self.equals_number is not None and not isinstance(self.equals_number, int):
self.equals_number = int(self.equals_number)
if not isinstance(self.none_of, list):
self.none_of = [self.none_of] if self.none_of is not None else []
self.none_of = [v if isinstance(v, AnonymousTypeExpression) else AnonymousTypeExpression(**as_dict(v)) for v in self.none_of]
if not isinstance(self.exactly_one_of, list):
self.exactly_one_of = [self.exactly_one_of] if self.exactly_one_of is not None else []
self.exactly_one_of = [v if isinstance(v, AnonymousTypeExpression) else AnonymousTypeExpression(**as_dict(v)) for v in self.exactly_one_of]
if not isinstance(self.any_of, list):
self.any_of = [self.any_of] if self.any_of is not None else []
self.any_of = [v if isinstance(v, AnonymousTypeExpression) else AnonymousTypeExpression(**as_dict(v)) for v in self.any_of]
if not isinstance(self.all_of, list):
self.all_of = [self.all_of] if self.all_of is not None else []
self.all_of = [v if isinstance(v, AnonymousTypeExpression) else AnonymousTypeExpression(**as_dict(v)) for v in self.all_of]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class EnumExpression(Expression):
"""
An expression that constrains the range of a slot
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["EnumExpression"]
class_class_curie: ClassVar[str] = "linkml:EnumExpression"
class_name: ClassVar[str] = "enum_expression"
class_model_uri: ClassVar[URIRef] = LINKML.EnumExpression
code_set: Optional[Union[str, URIorCURIE]] = None
code_set_tag: Optional[str] = None
code_set_version: Optional[str] = None
pv_formula: Optional[Union[str, "PvFormulaOptions"]] = None
permissible_values: Optional[Union[dict[Union[str, PermissibleValueText], Union[dict, "PermissibleValue"]], list[Union[dict, "PermissibleValue"]]]] = empty_dict()
include: Optional[Union[Union[dict, "AnonymousEnumExpression"], list[Union[dict, "AnonymousEnumExpression"]]]] = empty_list()
minus: Optional[Union[Union[dict, "AnonymousEnumExpression"], list[Union[dict, "AnonymousEnumExpression"]]]] = empty_list()
inherits: Optional[Union[Union[str, EnumDefinitionName], list[Union[str, EnumDefinitionName]]]] = empty_list()
reachable_from: Optional[Union[dict, "ReachabilityQuery"]] = None
matches: Optional[Union[dict, "MatchQuery"]] = None
concepts: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.code_set is not None and not isinstance(self.code_set, URIorCURIE):
self.code_set = URIorCURIE(self.code_set)
if self.code_set_tag is not None and not isinstance(self.code_set_tag, str):
self.code_set_tag = str(self.code_set_tag)
if self.code_set_version is not None and not isinstance(self.code_set_version, str):
self.code_set_version = str(self.code_set_version)
if self.pv_formula is not None and not isinstance(self.pv_formula, PvFormulaOptions):
self.pv_formula = PvFormulaOptions(self.pv_formula)
self._normalize_inlined_as_dict(slot_name="permissible_values", slot_type=PermissibleValue, key_name="text", keyed=True)
if not isinstance(self.include, list):
self.include = [self.include] if self.include is not None else []
self.include = [v if isinstance(v, AnonymousEnumExpression) else AnonymousEnumExpression(**as_dict(v)) for v in self.include]
if not isinstance(self.minus, list):
self.minus = [self.minus] if self.minus is not None else []
self.minus = [v if isinstance(v, AnonymousEnumExpression) else AnonymousEnumExpression(**as_dict(v)) for v in self.minus]
if not isinstance(self.inherits, list):
self.inherits = [self.inherits] if self.inherits is not None else []
self.inherits = [v if isinstance(v, EnumDefinitionName) else EnumDefinitionName(v) for v in self.inherits]
if self.reachable_from is not None and not isinstance(self.reachable_from, ReachabilityQuery):
self.reachable_from = ReachabilityQuery(**as_dict(self.reachable_from))
if self.matches is not None and not isinstance(self.matches, MatchQuery):
self.matches = MatchQuery(**as_dict(self.matches))
if not isinstance(self.concepts, list):
self.concepts = [self.concepts] if self.concepts is not None else []
self.concepts = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.concepts]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class AnonymousExpression(YAMLRoot):
"""
An abstract parent class for any nested expression
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["AnonymousExpression"]
class_class_curie: ClassVar[str] = "linkml:AnonymousExpression"
class_name: ClassVar[str] = "anonymous_expression"
class_model_uri: ClassVar[URIRef] = LINKML.AnonymousExpression
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, "AltDescription"]], list[Union[dict, "AltDescription"]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, "Example"], list[Union[dict, "Example"]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, StructuredAlias], list[Union[dict, StructuredAlias]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class PathExpression(YAMLRoot):
"""
An expression that describes an abstract path from an object to another through a sequence of slot lookups
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["PathExpression"]
class_class_curie: ClassVar[str] = "linkml:PathExpression"
class_name: ClassVar[str] = "path_expression"
class_model_uri: ClassVar[URIRef] = LINKML.PathExpression
followed_by: Optional[Union[dict, "PathExpression"]] = None
none_of: Optional[Union[Union[dict, "PathExpression"], list[Union[dict, "PathExpression"]]]] = empty_list()
any_of: Optional[Union[Union[dict, "PathExpression"], list[Union[dict, "PathExpression"]]]] = empty_list()
all_of: Optional[Union[Union[dict, "PathExpression"], list[Union[dict, "PathExpression"]]]] = empty_list()
exactly_one_of: Optional[Union[Union[dict, "PathExpression"], list[Union[dict, "PathExpression"]]]] = empty_list()
reversed: Optional[Union[bool, Bool]] = None
traverse: Optional[Union[str, SlotDefinitionName]] = None
range_expression: Optional[Union[dict, "AnonymousClassExpression"]] = None
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, "AltDescription"]], list[Union[dict, "AltDescription"]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, "Example"], list[Union[dict, "Example"]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, StructuredAlias], list[Union[dict, StructuredAlias]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.followed_by is not None and not isinstance(self.followed_by, PathExpression):
self.followed_by = PathExpression(**as_dict(self.followed_by))
if not isinstance(self.none_of, list):
self.none_of = [self.none_of] if self.none_of is not None else []
self.none_of = [v if isinstance(v, PathExpression) else PathExpression(**as_dict(v)) for v in self.none_of]
if not isinstance(self.any_of, list):
self.any_of = [self.any_of] if self.any_of is not None else []
self.any_of = [v if isinstance(v, PathExpression) else PathExpression(**as_dict(v)) for v in self.any_of]
if not isinstance(self.all_of, list):
self.all_of = [self.all_of] if self.all_of is not None else []
self.all_of = [v if isinstance(v, PathExpression) else PathExpression(**as_dict(v)) for v in self.all_of]
if not isinstance(self.exactly_one_of, list):
self.exactly_one_of = [self.exactly_one_of] if self.exactly_one_of is not None else []
self.exactly_one_of = [v if isinstance(v, PathExpression) else PathExpression(**as_dict(v)) for v in self.exactly_one_of]
if self.reversed is not None and not isinstance(self.reversed, Bool):
self.reversed = Bool(self.reversed)
if self.traverse is not None and not isinstance(self.traverse, SlotDefinitionName):
self.traverse = SlotDefinitionName(self.traverse)
if self.range_expression is not None and not isinstance(self.range_expression, AnonymousClassExpression):
self.range_expression = AnonymousClassExpression(**as_dict(self.range_expression))
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class SlotExpression(Expression):
"""
an expression that constrains the range of values a slot can take
"""
_inherited_slots: ClassVar[list[str]] = ["range", "required", "recommended", "multivalued", "inlined", "inlined_as_list", "minimum_value", "maximum_value", "pattern", "structured_pattern", "value_presence", "equals_string", "equals_string_in", "equals_number", "equals_expression", "exact_cardinality", "minimum_cardinality", "maximum_cardinality"]
class_class_uri: ClassVar[URIRef] = LINKML["SlotExpression"]
class_class_curie: ClassVar[str] = "linkml:SlotExpression"
class_name: ClassVar[str] = "slot_expression"
class_model_uri: ClassVar[URIRef] = LINKML.SlotExpression
range: Optional[Union[str, ElementName]] = None
range_expression: Optional[Union[dict, "AnonymousClassExpression"]] = None
enum_range: Optional[Union[dict, EnumExpression]] = None
bindings: Optional[Union[Union[dict, EnumBinding], list[Union[dict, EnumBinding]]]] = empty_list()
required: Optional[Union[bool, Bool]] = None
recommended: Optional[Union[bool, Bool]] = None
multivalued: Optional[Union[bool, Bool]] = None
inlined: Optional[Union[bool, Bool]] = None
inlined_as_list: Optional[Union[bool, Bool]] = None
minimum_value: Optional[Union[dict, Anything]] = None
maximum_value: Optional[Union[dict, Anything]] = None
pattern: Optional[str] = None
structured_pattern: Optional[Union[dict, "PatternExpression"]] = None
unit: Optional[Union[dict, UnitOfMeasure]] = None
implicit_prefix: Optional[str] = None
value_presence: Optional[Union[str, "PresenceEnum"]] = None
equals_string: Optional[str] = None
equals_string_in: Optional[Union[str, list[str]]] = empty_list()
equals_number: Optional[int] = None
equals_expression: Optional[str] = None
exact_cardinality: Optional[int] = None
minimum_cardinality: Optional[int] = None
maximum_cardinality: Optional[int] = None
has_member: Optional[Union[dict, "AnonymousSlotExpression"]] = None
all_members: Optional[Union[dict, "AnonymousSlotExpression"]] = None
none_of: Optional[Union[Union[dict, "AnonymousSlotExpression"], list[Union[dict, "AnonymousSlotExpression"]]]] = empty_list()
exactly_one_of: Optional[Union[Union[dict, "AnonymousSlotExpression"], list[Union[dict, "AnonymousSlotExpression"]]]] = empty_list()
any_of: Optional[Union[Union[dict, "AnonymousSlotExpression"], list[Union[dict, "AnonymousSlotExpression"]]]] = empty_list()
all_of: Optional[Union[Union[dict, "AnonymousSlotExpression"], list[Union[dict, "AnonymousSlotExpression"]]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.range is not None and not isinstance(self.range, ElementName):
self.range = ElementName(self.range)
if self.range_expression is not None and not isinstance(self.range_expression, AnonymousClassExpression):
self.range_expression = AnonymousClassExpression(**as_dict(self.range_expression))
if self.enum_range is not None and not isinstance(self.enum_range, EnumExpression):
self.enum_range = EnumExpression(**as_dict(self.enum_range))
if not isinstance(self.bindings, list):
self.bindings = [self.bindings] if self.bindings is not None else []
self.bindings = [v if isinstance(v, EnumBinding) else EnumBinding(**as_dict(v)) for v in self.bindings]
if self.required is not None and not isinstance(self.required, Bool):
self.required = Bool(self.required)
if self.recommended is not None and not isinstance(self.recommended, Bool):
self.recommended = Bool(self.recommended)
if self.multivalued is not None and not isinstance(self.multivalued, Bool):
self.multivalued = Bool(self.multivalued)
if self.inlined is not None and not isinstance(self.inlined, Bool):
self.inlined = Bool(self.inlined)
if self.inlined_as_list is not None and not isinstance(self.inlined_as_list, Bool):
self.inlined_as_list = Bool(self.inlined_as_list)
if self.pattern is not None and not isinstance(self.pattern, str):
self.pattern = str(self.pattern)
if self.structured_pattern is not None and not isinstance(self.structured_pattern, PatternExpression):
self.structured_pattern = PatternExpression(**as_dict(self.structured_pattern))
if self.unit is not None and not isinstance(self.unit, UnitOfMeasure):
self.unit = UnitOfMeasure(**as_dict(self.unit))
if self.implicit_prefix is not None and not isinstance(self.implicit_prefix, str):
self.implicit_prefix = str(self.implicit_prefix)
if self.value_presence is not None and not isinstance(self.value_presence, PresenceEnum):
self.value_presence = PresenceEnum(self.value_presence)
if self.equals_string is not None and not isinstance(self.equals_string, str):
self.equals_string = str(self.equals_string)
if not isinstance(self.equals_string_in, list):
self.equals_string_in = [self.equals_string_in] if self.equals_string_in is not None else []
self.equals_string_in = [v if isinstance(v, str) else str(v) for v in self.equals_string_in]
if self.equals_number is not None and not isinstance(self.equals_number, int):
self.equals_number = int(self.equals_number)
if self.equals_expression is not None and not isinstance(self.equals_expression, str):
self.equals_expression = str(self.equals_expression)
if self.exact_cardinality is not None and not isinstance(self.exact_cardinality, int):
self.exact_cardinality = int(self.exact_cardinality)
if self.minimum_cardinality is not None and not isinstance(self.minimum_cardinality, int):
self.minimum_cardinality = int(self.minimum_cardinality)
if self.maximum_cardinality is not None and not isinstance(self.maximum_cardinality, int):
self.maximum_cardinality = int(self.maximum_cardinality)
if self.has_member is not None and not isinstance(self.has_member, AnonymousSlotExpression):
self.has_member = AnonymousSlotExpression(**as_dict(self.has_member))
if self.all_members is not None and not isinstance(self.all_members, AnonymousSlotExpression):
self.all_members = AnonymousSlotExpression(**as_dict(self.all_members))
if not isinstance(self.none_of, list):
self.none_of = [self.none_of] if self.none_of is not None else []
self.none_of = [v if isinstance(v, AnonymousSlotExpression) else AnonymousSlotExpression(**as_dict(v)) for v in self.none_of]
if not isinstance(self.exactly_one_of, list):
self.exactly_one_of = [self.exactly_one_of] if self.exactly_one_of is not None else []
self.exactly_one_of = [v if isinstance(v, AnonymousSlotExpression) else AnonymousSlotExpression(**as_dict(v)) for v in self.exactly_one_of]
if not isinstance(self.any_of, list):
self.any_of = [self.any_of] if self.any_of is not None else []
self.any_of = [v if isinstance(v, AnonymousSlotExpression) else AnonymousSlotExpression(**as_dict(v)) for v in self.any_of]
if not isinstance(self.all_of, list):
self.all_of = [self.all_of] if self.all_of is not None else []
self.all_of = [v if isinstance(v, AnonymousSlotExpression) else AnonymousSlotExpression(**as_dict(v)) for v in self.all_of]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class AnonymousSlotExpression(AnonymousExpression):
_inherited_slots: ClassVar[list[str]] = ["range", "required", "recommended", "multivalued", "inlined", "inlined_as_list", "minimum_value", "maximum_value", "pattern", "structured_pattern", "value_presence", "equals_string", "equals_string_in", "equals_number", "equals_expression", "exact_cardinality", "minimum_cardinality", "maximum_cardinality"]
class_class_uri: ClassVar[URIRef] = LINKML["AnonymousSlotExpression"]
class_class_curie: ClassVar[str] = "linkml:AnonymousSlotExpression"
class_name: ClassVar[str] = "anonymous_slot_expression"
class_model_uri: ClassVar[URIRef] = LINKML.AnonymousSlotExpression
range: Optional[Union[str, ElementName]] = None
range_expression: Optional[Union[dict, "AnonymousClassExpression"]] = None
enum_range: Optional[Union[dict, EnumExpression]] = None
bindings: Optional[Union[Union[dict, EnumBinding], list[Union[dict, EnumBinding]]]] = empty_list()
required: Optional[Union[bool, Bool]] = None
recommended: Optional[Union[bool, Bool]] = None
multivalued: Optional[Union[bool, Bool]] = None
inlined: Optional[Union[bool, Bool]] = None
inlined_as_list: Optional[Union[bool, Bool]] = None
minimum_value: Optional[Union[dict, Anything]] = None
maximum_value: Optional[Union[dict, Anything]] = None
pattern: Optional[str] = None
structured_pattern: Optional[Union[dict, "PatternExpression"]] = None
unit: Optional[Union[dict, UnitOfMeasure]] = None
implicit_prefix: Optional[str] = None
value_presence: Optional[Union[str, "PresenceEnum"]] = None
equals_string: Optional[str] = None
equals_string_in: Optional[Union[str, list[str]]] = empty_list()
equals_number: Optional[int] = None
equals_expression: Optional[str] = None
exact_cardinality: Optional[int] = None
minimum_cardinality: Optional[int] = None
maximum_cardinality: Optional[int] = None
has_member: Optional[Union[dict, "AnonymousSlotExpression"]] = None
all_members: Optional[Union[dict, "AnonymousSlotExpression"]] = None
none_of: Optional[Union[Union[dict, "AnonymousSlotExpression"], list[Union[dict, "AnonymousSlotExpression"]]]] = empty_list()
exactly_one_of: Optional[Union[Union[dict, "AnonymousSlotExpression"], list[Union[dict, "AnonymousSlotExpression"]]]] = empty_list()
any_of: Optional[Union[Union[dict, "AnonymousSlotExpression"], list[Union[dict, "AnonymousSlotExpression"]]]] = empty_list()
all_of: Optional[Union[Union[dict, "AnonymousSlotExpression"], list[Union[dict, "AnonymousSlotExpression"]]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.range is not None and not isinstance(self.range, ElementName):
self.range = ElementName(self.range)
if self.range_expression is not None and not isinstance(self.range_expression, AnonymousClassExpression):
self.range_expression = AnonymousClassExpression(**as_dict(self.range_expression))
if self.enum_range is not None and not isinstance(self.enum_range, EnumExpression):
self.enum_range = EnumExpression(**as_dict(self.enum_range))
if not isinstance(self.bindings, list):
self.bindings = [self.bindings] if self.bindings is not None else []
self.bindings = [v if isinstance(v, EnumBinding) else EnumBinding(**as_dict(v)) for v in self.bindings]
if self.required is not None and not isinstance(self.required, Bool):
self.required = Bool(self.required)
if self.recommended is not None and not isinstance(self.recommended, Bool):
self.recommended = Bool(self.recommended)
if self.multivalued is not None and not isinstance(self.multivalued, Bool):
self.multivalued = Bool(self.multivalued)
if self.inlined is not None and not isinstance(self.inlined, Bool):
self.inlined = Bool(self.inlined)
if self.inlined_as_list is not None and not isinstance(self.inlined_as_list, Bool):
self.inlined_as_list = Bool(self.inlined_as_list)
if self.pattern is not None and not isinstance(self.pattern, str):
self.pattern = str(self.pattern)
if self.structured_pattern is not None and not isinstance(self.structured_pattern, PatternExpression):
self.structured_pattern = PatternExpression(**as_dict(self.structured_pattern))
if self.unit is not None and not isinstance(self.unit, UnitOfMeasure):
self.unit = UnitOfMeasure(**as_dict(self.unit))
if self.implicit_prefix is not None and not isinstance(self.implicit_prefix, str):
self.implicit_prefix = str(self.implicit_prefix)
if self.value_presence is not None and not isinstance(self.value_presence, PresenceEnum):
self.value_presence = PresenceEnum(self.value_presence)
if self.equals_string is not None and not isinstance(self.equals_string, str):
self.equals_string = str(self.equals_string)
if not isinstance(self.equals_string_in, list):
self.equals_string_in = [self.equals_string_in] if self.equals_string_in is not None else []
self.equals_string_in = [v if isinstance(v, str) else str(v) for v in self.equals_string_in]
if self.equals_number is not None and not isinstance(self.equals_number, int):
self.equals_number = int(self.equals_number)
if self.equals_expression is not None and not isinstance(self.equals_expression, str):
self.equals_expression = str(self.equals_expression)
if self.exact_cardinality is not None and not isinstance(self.exact_cardinality, int):
self.exact_cardinality = int(self.exact_cardinality)
if self.minimum_cardinality is not None and not isinstance(self.minimum_cardinality, int):
self.minimum_cardinality = int(self.minimum_cardinality)
if self.maximum_cardinality is not None and not isinstance(self.maximum_cardinality, int):
self.maximum_cardinality = int(self.maximum_cardinality)
if self.has_member is not None and not isinstance(self.has_member, AnonymousSlotExpression):
self.has_member = AnonymousSlotExpression(**as_dict(self.has_member))
if self.all_members is not None and not isinstance(self.all_members, AnonymousSlotExpression):
self.all_members = AnonymousSlotExpression(**as_dict(self.all_members))
if not isinstance(self.none_of, list):
self.none_of = [self.none_of] if self.none_of is not None else []
self.none_of = [v if isinstance(v, AnonymousSlotExpression) else AnonymousSlotExpression(**as_dict(v)) for v in self.none_of]
if not isinstance(self.exactly_one_of, list):
self.exactly_one_of = [self.exactly_one_of] if self.exactly_one_of is not None else []
self.exactly_one_of = [v if isinstance(v, AnonymousSlotExpression) else AnonymousSlotExpression(**as_dict(v)) for v in self.exactly_one_of]
if not isinstance(self.any_of, list):
self.any_of = [self.any_of] if self.any_of is not None else []
self.any_of = [v if isinstance(v, AnonymousSlotExpression) else AnonymousSlotExpression(**as_dict(v)) for v in self.any_of]
if not isinstance(self.all_of, list):
self.all_of = [self.all_of] if self.all_of is not None else []
self.all_of = [v if isinstance(v, AnonymousSlotExpression) else AnonymousSlotExpression(**as_dict(v)) for v in self.all_of]
super().__post_init__(**kwargs)
[docs]@dataclass(repr=False)
class SlotDefinition(Definition):
"""
an element that describes how instances are related to other instances
"""
_inherited_slots: ClassVar[list[str]] = ["domain", "array", "inherited", "readonly", "ifabsent", "list_elements_unique", "list_elements_ordered", "shared", "key", "identifier", "designates_type", "role", "relational_role", "range", "required", "recommended", "multivalued", "inlined", "inlined_as_list", "minimum_value", "maximum_value", "pattern", "structured_pattern", "value_presence", "equals_string", "equals_string_in", "equals_number", "equals_expression", "exact_cardinality", "minimum_cardinality", "maximum_cardinality"]
class_class_uri: ClassVar[URIRef] = LINKML["SlotDefinition"]
class_class_curie: ClassVar[str] = "linkml:SlotDefinition"
class_name: ClassVar[str] = "slot_definition"
class_model_uri: ClassVar[URIRef] = LINKML.SlotDefinition
name: Union[str, SlotDefinitionName] = None
singular_name: Optional[str] = None
domain: Optional[Union[str, ClassDefinitionName]] = None
slot_uri: Optional[Union[str, URIorCURIE]] = None
array: Optional[Union[dict, "ArrayExpression"]] = None
inherited: Optional[Union[bool, Bool]] = None
readonly: Optional[str] = None
ifabsent: Optional[str] = None
list_elements_unique: Optional[Union[bool, Bool]] = None
list_elements_ordered: Optional[Union[bool, Bool]] = None
shared: Optional[Union[bool, Bool]] = None
key: Optional[Union[bool, Bool]] = None
identifier: Optional[Union[bool, Bool]] = None
designates_type: Optional[Union[bool, Bool]] = None
alias: Optional[str] = None
owner: Optional[Union[str, DefinitionName]] = None
domain_of: Optional[Union[Union[str, ClassDefinitionName], list[Union[str, ClassDefinitionName]]]] = empty_list()
subproperty_of: Optional[Union[str, SlotDefinitionName]] = None
symmetric: Optional[Union[bool, Bool]] = None
reflexive: Optional[Union[bool, Bool]] = None
locally_reflexive: Optional[Union[bool, Bool]] = None
irreflexive: Optional[Union[bool, Bool]] = None
asymmetric: Optional[Union[bool, Bool]] = None
transitive: Optional[Union[bool, Bool]] = None
inverse: Optional[Union[str, SlotDefinitionName]] = None
is_class_field: Optional[Union[bool, Bool]] = None
transitive_form_of: Optional[Union[str, SlotDefinitionName]] = None
reflexive_transitive_form_of: Optional[Union[str, SlotDefinitionName]] = None
role: Optional[str] = None
is_usage_slot: Optional[Union[bool, Bool]] = None
usage_slot_name: Optional[str] = None
relational_role: Optional[Union[str, "RelationalRoleEnum"]] = None
slot_group: Optional[Union[str, SlotDefinitionName]] = None
is_grouping_slot: Optional[Union[bool, Bool]] = None
path_rule: Optional[Union[dict, PathExpression]] = None
disjoint_with: Optional[Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]]] = empty_list()
children_are_mutually_disjoint: Optional[Union[bool, Bool]] = None
union_of: Optional[Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]]] = empty_list()
type_mappings: Optional[Union[Union[str, TypeMappingFramework], list[Union[str, TypeMappingFramework]]]] = empty_list()
is_a: Optional[Union[str, SlotDefinitionName]] = None
mixins: Optional[Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]]] = empty_list()
apply_to: Optional[Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]]] = empty_list()
range: Optional[Union[str, ElementName]] = None
range_expression: Optional[Union[dict, "AnonymousClassExpression"]] = None
enum_range: Optional[Union[dict, EnumExpression]] = None
bindings: Optional[Union[Union[dict, EnumBinding], list[Union[dict, EnumBinding]]]] = empty_list()
required: Optional[Union[bool, Bool]] = None
recommended: Optional[Union[bool, Bool]] = None
multivalued: Optional[Union[bool, Bool]] = None
inlined: Optional[Union[bool, Bool]] = None
inlined_as_list: Optional[Union[bool, Bool]] = None
minimum_value: Optional[Union[dict, Anything]] = None
maximum_value: Optional[Union[dict, Anything]] = None
pattern: Optional[str] = None
structured_pattern: Optional[Union[dict, "PatternExpression"]] = None
unit: Optional[Union[dict, UnitOfMeasure]] = None
implicit_prefix: Optional[str] = None
value_presence: Optional[Union[str, "PresenceEnum"]] = None
equals_string: Optional[str] = None
equals_string_in: Optional[Union[str, list[str]]] = empty_list()
equals_number: Optional[int] = None
equals_expression: Optional[str] = None
exact_cardinality: Optional[int] = None
minimum_cardinality: Optional[int] = None
maximum_cardinality: Optional[int] = None
has_member: Optional[Union[dict, AnonymousSlotExpression]] = None
all_members: Optional[Union[dict, AnonymousSlotExpression]] = None
none_of: Optional[Union[Union[dict, AnonymousSlotExpression], list[Union[dict, AnonymousSlotExpression]]]] = empty_list()
exactly_one_of: Optional[Union[Union[dict, AnonymousSlotExpression], list[Union[dict, AnonymousSlotExpression]]]] = empty_list()
any_of: Optional[Union[Union[dict, AnonymousSlotExpression], list[Union[dict, AnonymousSlotExpression]]]] = empty_list()
all_of: Optional[Union[Union[dict, AnonymousSlotExpression], list[Union[dict, AnonymousSlotExpression]]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.name):
self.MissingRequiredField("name")
if not isinstance(self.name, SlotDefinitionName):
self.name = SlotDefinitionName(self.name)
if self.singular_name is not None and not isinstance(self.singular_name, str):
self.singular_name = str(self.singular_name)
if self.domain is not None and not isinstance(self.domain, ClassDefinitionName):
self.domain = ClassDefinitionName(self.domain)
if self.slot_uri is not None and not isinstance(self.slot_uri, URIorCURIE):
self.slot_uri = URIorCURIE(self.slot_uri)
if self.array is not None and not isinstance(self.array, ArrayExpression):
self.array = ArrayExpression(**as_dict(self.array))
if self.inherited is not None and not isinstance(self.inherited, Bool):
self.inherited = Bool(self.inherited)
if self.readonly is not None and not isinstance(self.readonly, str):
self.readonly = str(self.readonly)
if self.ifabsent is not None and not isinstance(self.ifabsent, str):
self.ifabsent = str(self.ifabsent)
if self.list_elements_unique is not None and not isinstance(self.list_elements_unique, Bool):
self.list_elements_unique = Bool(self.list_elements_unique)
if self.list_elements_ordered is not None and not isinstance(self.list_elements_ordered, Bool):
self.list_elements_ordered = Bool(self.list_elements_ordered)
if self.shared is not None and not isinstance(self.shared, Bool):
self.shared = Bool(self.shared)
if self.key is not None and not isinstance(self.key, Bool):
self.key = Bool(self.key)
if self.identifier is not None and not isinstance(self.identifier, Bool):
self.identifier = Bool(self.identifier)
if self.designates_type is not None and not isinstance(self.designates_type, Bool):
self.designates_type = Bool(self.designates_type)
if self.alias is not None and not isinstance(self.alias, str):
self.alias = str(self.alias)
if self.owner is not None and not isinstance(self.owner, DefinitionName):
self.owner = DefinitionName(self.owner)
if not isinstance(self.domain_of, list):
self.domain_of = [self.domain_of] if self.domain_of is not None else []
self.domain_of = [v if isinstance(v, ClassDefinitionName) else ClassDefinitionName(v) for v in self.domain_of]
if self.subproperty_of is not None and not isinstance(self.subproperty_of, SlotDefinitionName):
self.subproperty_of = SlotDefinitionName(self.subproperty_of)
if self.symmetric is not None and not isinstance(self.symmetric, Bool):
self.symmetric = Bool(self.symmetric)
if self.reflexive is not None and not isinstance(self.reflexive, Bool):
self.reflexive = Bool(self.reflexive)
if self.locally_reflexive is not None and not isinstance(self.locally_reflexive, Bool):
self.locally_reflexive = Bool(self.locally_reflexive)
if self.irreflexive is not None and not isinstance(self.irreflexive, Bool):
self.irreflexive = Bool(self.irreflexive)
if self.asymmetric is not None and not isinstance(self.asymmetric, Bool):
self.asymmetric = Bool(self.asymmetric)
if self.transitive is not None and not isinstance(self.transitive, Bool):
self.transitive = Bool(self.transitive)
if self.inverse is not None and not isinstance(self.inverse, SlotDefinitionName):
self.inverse = SlotDefinitionName(self.inverse)
if self.is_class_field is not None and not isinstance(self.is_class_field, Bool):
self.is_class_field = Bool(self.is_class_field)
if self.transitive_form_of is not None and not isinstance(self.transitive_form_of, SlotDefinitionName):
self.transitive_form_of = SlotDefinitionName(self.transitive_form_of)
if self.reflexive_transitive_form_of is not None and not isinstance(self.reflexive_transitive_form_of, SlotDefinitionName):
self.reflexive_transitive_form_of = SlotDefinitionName(self.reflexive_transitive_form_of)
if self.role is not None and not isinstance(self.role, str):
self.role = str(self.role)
if self.is_usage_slot is not None and not isinstance(self.is_usage_slot, Bool):
self.is_usage_slot = Bool(self.is_usage_slot)
if self.usage_slot_name is not None and not isinstance(self.usage_slot_name, str):
self.usage_slot_name = str(self.usage_slot_name)
if self.relational_role is not None and not isinstance(self.relational_role, RelationalRoleEnum):
self.relational_role = RelationalRoleEnum(self.relational_role)
if self.slot_group is not None and not isinstance(self.slot_group, SlotDefinitionName):
self.slot_group = SlotDefinitionName(self.slot_group)
if self.is_grouping_slot is not None and not isinstance(self.is_grouping_slot, Bool):
self.is_grouping_slot = Bool(self.is_grouping_slot)
if self.path_rule is not None and not isinstance(self.path_rule, PathExpression):
self.path_rule = PathExpression(**as_dict(self.path_rule))
if not isinstance(self.disjoint_with, list):
self.disjoint_with = [self.disjoint_with] if self.disjoint_with is not None else []
self.disjoint_with = [v if isinstance(v, SlotDefinitionName) else SlotDefinitionName(v) for v in self.disjoint_with]
if self.children_are_mutually_disjoint is not None and not isinstance(self.children_are_mutually_disjoint, Bool):
self.children_are_mutually_disjoint = Bool(self.children_are_mutually_disjoint)
if not isinstance(self.union_of, list):
self.union_of = [self.union_of] if self.union_of is not None else []
self.union_of = [v if isinstance(v, SlotDefinitionName) else SlotDefinitionName(v) for v in self.union_of]
if not isinstance(self.type_mappings, list):
self.type_mappings = [self.type_mappings] if self.type_mappings is not None else []
self.type_mappings = [v if isinstance(v, TypeMappingFramework) else TypeMappingFramework(v) for v in self.type_mappings]
if self.is_a is not None and not isinstance(self.is_a, SlotDefinitionName):
self.is_a = SlotDefinitionName(self.is_a)
if not isinstance(self.mixins, list):
self.mixins = [self.mixins] if self.mixins is not None else []
self.mixins = [v if isinstance(v, SlotDefinitionName) else SlotDefinitionName(v) for v in self.mixins]
if not isinstance(self.apply_to, list):
self.apply_to = [self.apply_to] if self.apply_to is not None else []
self.apply_to = [v if isinstance(v, SlotDefinitionName) else SlotDefinitionName(v) for v in self.apply_to]
if self.range is not None and not isinstance(self.range, ElementName):
self.range = ElementName(self.range)
if self.range_expression is not None and not isinstance(self.range_expression, AnonymousClassExpression):
self.range_expression = AnonymousClassExpression(**as_dict(self.range_expression))
if self.enum_range is not None and not isinstance(self.enum_range, EnumExpression):
self.enum_range = EnumExpression(**as_dict(self.enum_range))
if not isinstance(self.bindings, list):
self.bindings = [self.bindings] if self.bindings is not None else []
self.bindings = [v if isinstance(v, EnumBinding) else EnumBinding(**as_dict(v)) for v in self.bindings]
if self.required is not None and not isinstance(self.required, Bool):
self.required = Bool(self.required)
if self.recommended is not None and not isinstance(self.recommended, Bool):
self.recommended = Bool(self.recommended)
if self.multivalued is not None and not isinstance(self.multivalued, Bool):
self.multivalued = Bool(self.multivalued)
if self.inlined is not None and not isinstance(self.inlined, Bool):
self.inlined = Bool(self.inlined)
if self.inlined_as_list is not None and not isinstance(self.inlined_as_list, Bool):
self.inlined_as_list = Bool(self.inlined_as_list)
if self.pattern is not None and not isinstance(self.pattern, str):
self.pattern = str(self.pattern)
if self.structured_pattern is not None and not isinstance(self.structured_pattern, PatternExpression):
self.structured_pattern = PatternExpression(**as_dict(self.structured_pattern))
if self.unit is not None and not isinstance(self.unit, UnitOfMeasure):
self.unit = UnitOfMeasure(**as_dict(self.unit))
if self.implicit_prefix is not None and not isinstance(self.implicit_prefix, str):
self.implicit_prefix = str(self.implicit_prefix)
if self.value_presence is not None and not isinstance(self.value_presence, PresenceEnum):
self.value_presence = PresenceEnum(self.value_presence)
if self.equals_string is not None and not isinstance(self.equals_string, str):
self.equals_string = str(self.equals_string)
if not isinstance(self.equals_string_in, list):
self.equals_string_in = [self.equals_string_in] if self.equals_string_in is not None else []
self.equals_string_in = [v if isinstance(v, str) else str(v) for v in self.equals_string_in]
if self.equals_number is not None and not isinstance(self.equals_number, int):
self.equals_number = int(self.equals_number)
if self.equals_expression is not None and not isinstance(self.equals_expression, str):
self.equals_expression = str(self.equals_expression)
if self.exact_cardinality is not None and not isinstance(self.exact_cardinality, int):
self.exact_cardinality = int(self.exact_cardinality)
if self.minimum_cardinality is not None and not isinstance(self.minimum_cardinality, int):
self.minimum_cardinality = int(self.minimum_cardinality)
if self.maximum_cardinality is not None and not isinstance(self.maximum_cardinality, int):
self.maximum_cardinality = int(self.maximum_cardinality)
if self.has_member is not None and not isinstance(self.has_member, AnonymousSlotExpression):
self.has_member = AnonymousSlotExpression(**as_dict(self.has_member))
if self.all_members is not None and not isinstance(self.all_members, AnonymousSlotExpression):
self.all_members = AnonymousSlotExpression(**as_dict(self.all_members))
if not isinstance(self.none_of, list):
self.none_of = [self.none_of] if self.none_of is not None else []
self.none_of = [v if isinstance(v, AnonymousSlotExpression) else AnonymousSlotExpression(**as_dict(v)) for v in self.none_of]
if not isinstance(self.exactly_one_of, list):
self.exactly_one_of = [self.exactly_one_of] if self.exactly_one_of is not None else []
self.exactly_one_of = [v if isinstance(v, AnonymousSlotExpression) else AnonymousSlotExpression(**as_dict(v)) for v in self.exactly_one_of]
if not isinstance(self.any_of, list):
self.any_of = [self.any_of] if self.any_of is not None else []
self.any_of = [v if isinstance(v, AnonymousSlotExpression) else AnonymousSlotExpression(**as_dict(v)) for v in self.any_of]
if not isinstance(self.all_of, list):
self.all_of = [self.all_of] if self.all_of is not None else []
self.all_of = [v if isinstance(v, AnonymousSlotExpression) else AnonymousSlotExpression(**as_dict(v)) for v in self.all_of]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class ClassExpression(YAMLRoot):
"""
A boolean expression that can be used to dynamically determine membership of a class
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["ClassExpression"]
class_class_curie: ClassVar[str] = "linkml:ClassExpression"
class_name: ClassVar[str] = "class_expression"
class_model_uri: ClassVar[URIRef] = LINKML.ClassExpression
any_of: Optional[Union[Union[dict, "AnonymousClassExpression"], list[Union[dict, "AnonymousClassExpression"]]]] = empty_list()
exactly_one_of: Optional[Union[Union[dict, "AnonymousClassExpression"], list[Union[dict, "AnonymousClassExpression"]]]] = empty_list()
none_of: Optional[Union[Union[dict, "AnonymousClassExpression"], list[Union[dict, "AnonymousClassExpression"]]]] = empty_list()
all_of: Optional[Union[Union[dict, "AnonymousClassExpression"], list[Union[dict, "AnonymousClassExpression"]]]] = empty_list()
slot_conditions: Optional[Union[dict[Union[str, SlotDefinitionName], Union[dict, SlotDefinition]], list[Union[dict, SlotDefinition]]]] = empty_dict()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if not isinstance(self.any_of, list):
self.any_of = [self.any_of] if self.any_of is not None else []
self.any_of = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.any_of]
if not isinstance(self.exactly_one_of, list):
self.exactly_one_of = [self.exactly_one_of] if self.exactly_one_of is not None else []
self.exactly_one_of = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.exactly_one_of]
if not isinstance(self.none_of, list):
self.none_of = [self.none_of] if self.none_of is not None else []
self.none_of = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.none_of]
if not isinstance(self.all_of, list):
self.all_of = [self.all_of] if self.all_of is not None else []
self.all_of = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.all_of]
self._normalize_inlined_as_dict(slot_name="slot_conditions", slot_type=SlotDefinition, key_name="name", keyed=True)
super().__post_init__(**kwargs)
@dataclass(repr=False)
class AnonymousClassExpression(AnonymousExpression):
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["AnonymousClassExpression"]
class_class_curie: ClassVar[str] = "linkml:AnonymousClassExpression"
class_name: ClassVar[str] = "anonymous_class_expression"
class_model_uri: ClassVar[URIRef] = LINKML.AnonymousClassExpression
is_a: Optional[Union[str, DefinitionName]] = None
any_of: Optional[Union[Union[dict, "AnonymousClassExpression"], list[Union[dict, "AnonymousClassExpression"]]]] = empty_list()
exactly_one_of: Optional[Union[Union[dict, "AnonymousClassExpression"], list[Union[dict, "AnonymousClassExpression"]]]] = empty_list()
none_of: Optional[Union[Union[dict, "AnonymousClassExpression"], list[Union[dict, "AnonymousClassExpression"]]]] = empty_list()
all_of: Optional[Union[Union[dict, "AnonymousClassExpression"], list[Union[dict, "AnonymousClassExpression"]]]] = empty_list()
slot_conditions: Optional[Union[dict[Union[str, SlotDefinitionName], Union[dict, SlotDefinition]], list[Union[dict, SlotDefinition]]]] = empty_dict()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.is_a is not None and not isinstance(self.is_a, DefinitionName):
self.is_a = DefinitionName(self.is_a)
if not isinstance(self.any_of, list):
self.any_of = [self.any_of] if self.any_of is not None else []
self.any_of = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.any_of]
if not isinstance(self.exactly_one_of, list):
self.exactly_one_of = [self.exactly_one_of] if self.exactly_one_of is not None else []
self.exactly_one_of = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.exactly_one_of]
if not isinstance(self.none_of, list):
self.none_of = [self.none_of] if self.none_of is not None else []
self.none_of = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.none_of]
if not isinstance(self.all_of, list):
self.all_of = [self.all_of] if self.all_of is not None else []
self.all_of = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.all_of]
self._normalize_inlined_as_dict(slot_name="slot_conditions", slot_type=SlotDefinition, key_name="name", keyed=True)
super().__post_init__(**kwargs)
[docs]@dataclass(repr=False)
class ClassDefinition(Definition):
"""
an element whose instances are complex objects that may have slot-value assignments
"""
_inherited_slots: ClassVar[list[str]] = ["defining_slots", "represents_relationship"]
class_class_uri: ClassVar[URIRef] = LINKML["ClassDefinition"]
class_class_curie: ClassVar[str] = "linkml:ClassDefinition"
class_name: ClassVar[str] = "class_definition"
class_model_uri: ClassVar[URIRef] = LINKML.ClassDefinition
name: Union[str, ClassDefinitionName] = None
slots: Optional[Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]]] = empty_list()
slot_usage: Optional[Union[dict[Union[str, SlotDefinitionName], Union[dict, SlotDefinition]], list[Union[dict, SlotDefinition]]]] = empty_dict()
attributes: Optional[Union[dict[Union[str, SlotDefinitionName], Union[dict, SlotDefinition]], list[Union[dict, SlotDefinition]]]] = empty_dict()
class_uri: Optional[Union[str, URIorCURIE]] = None
subclass_of: Optional[Union[str, URIorCURIE]] = None
union_of: Optional[Union[Union[str, ClassDefinitionName], list[Union[str, ClassDefinitionName]]]] = empty_list()
defining_slots: Optional[Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]]] = empty_list()
tree_root: Optional[Union[bool, Bool]] = None
unique_keys: Optional[Union[dict[Union[str, UniqueKeyUniqueKeyName], Union[dict, "UniqueKey"]], list[Union[dict, "UniqueKey"]]]] = empty_dict()
rules: Optional[Union[Union[dict, "ClassRule"], list[Union[dict, "ClassRule"]]]] = empty_list()
classification_rules: Optional[Union[Union[dict, AnonymousClassExpression], list[Union[dict, AnonymousClassExpression]]]] = empty_list()
slot_names_unique: Optional[Union[bool, Bool]] = None
represents_relationship: Optional[Union[bool, Bool]] = None
disjoint_with: Optional[Union[Union[str, ClassDefinitionName], list[Union[str, ClassDefinitionName]]]] = empty_list()
children_are_mutually_disjoint: Optional[Union[bool, Bool]] = None
is_a: Optional[Union[str, ClassDefinitionName]] = None
mixins: Optional[Union[Union[str, ClassDefinitionName], list[Union[str, ClassDefinitionName]]]] = empty_list()
apply_to: Optional[Union[Union[str, ClassDefinitionName], list[Union[str, ClassDefinitionName]]]] = empty_list()
any_of: Optional[Union[Union[dict, AnonymousClassExpression], list[Union[dict, AnonymousClassExpression]]]] = empty_list()
exactly_one_of: Optional[Union[Union[dict, AnonymousClassExpression], list[Union[dict, AnonymousClassExpression]]]] = empty_list()
none_of: Optional[Union[Union[dict, AnonymousClassExpression], list[Union[dict, AnonymousClassExpression]]]] = empty_list()
all_of: Optional[Union[Union[dict, AnonymousClassExpression], list[Union[dict, AnonymousClassExpression]]]] = empty_list()
slot_conditions: Optional[Union[dict[Union[str, SlotDefinitionName], Union[dict, SlotDefinition]], list[Union[dict, SlotDefinition]]]] = empty_dict()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.name):
self.MissingRequiredField("name")
if not isinstance(self.name, ClassDefinitionName):
self.name = ClassDefinitionName(self.name)
if not isinstance(self.slots, list):
self.slots = [self.slots] if self.slots is not None else []
self.slots = [v if isinstance(v, SlotDefinitionName) else SlotDefinitionName(v) for v in self.slots]
self._normalize_inlined_as_dict(slot_name="slot_usage", slot_type=SlotDefinition, key_name="name", keyed=True)
self._normalize_inlined_as_dict(slot_name="attributes", slot_type=SlotDefinition, key_name="name", keyed=True)
if self.class_uri is not None and not isinstance(self.class_uri, URIorCURIE):
self.class_uri = URIorCURIE(self.class_uri)
if self.subclass_of is not None and not isinstance(self.subclass_of, URIorCURIE):
self.subclass_of = URIorCURIE(self.subclass_of)
if not isinstance(self.union_of, list):
self.union_of = [self.union_of] if self.union_of is not None else []
self.union_of = [v if isinstance(v, ClassDefinitionName) else ClassDefinitionName(v) for v in self.union_of]
if not isinstance(self.defining_slots, list):
self.defining_slots = [self.defining_slots] if self.defining_slots is not None else []
self.defining_slots = [v if isinstance(v, SlotDefinitionName) else SlotDefinitionName(v) for v in self.defining_slots]
if self.tree_root is not None and not isinstance(self.tree_root, Bool):
self.tree_root = Bool(self.tree_root)
self._normalize_inlined_as_dict(slot_name="unique_keys", slot_type=UniqueKey, key_name="unique_key_name", keyed=True)
if not isinstance(self.rules, list):
self.rules = [self.rules] if self.rules is not None else []
self.rules = [v if isinstance(v, ClassRule) else ClassRule(**as_dict(v)) for v in self.rules]
if not isinstance(self.classification_rules, list):
self.classification_rules = [self.classification_rules] if self.classification_rules is not None else []
self.classification_rules = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.classification_rules]
if self.slot_names_unique is not None and not isinstance(self.slot_names_unique, Bool):
self.slot_names_unique = Bool(self.slot_names_unique)
if self.represents_relationship is not None and not isinstance(self.represents_relationship, Bool):
self.represents_relationship = Bool(self.represents_relationship)
if not isinstance(self.disjoint_with, list):
self.disjoint_with = [self.disjoint_with] if self.disjoint_with is not None else []
self.disjoint_with = [v if isinstance(v, ClassDefinitionName) else ClassDefinitionName(v) for v in self.disjoint_with]
if self.children_are_mutually_disjoint is not None and not isinstance(self.children_are_mutually_disjoint, Bool):
self.children_are_mutually_disjoint = Bool(self.children_are_mutually_disjoint)
if self.is_a is not None and not isinstance(self.is_a, ClassDefinitionName):
self.is_a = ClassDefinitionName(self.is_a)
if not isinstance(self.mixins, list):
self.mixins = [self.mixins] if self.mixins is not None else []
self.mixins = [v if isinstance(v, ClassDefinitionName) else ClassDefinitionName(v) for v in self.mixins]
if not isinstance(self.apply_to, list):
self.apply_to = [self.apply_to] if self.apply_to is not None else []
self.apply_to = [v if isinstance(v, ClassDefinitionName) else ClassDefinitionName(v) for v in self.apply_to]
if not isinstance(self.any_of, list):
self.any_of = [self.any_of] if self.any_of is not None else []
self.any_of = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.any_of]
if not isinstance(self.exactly_one_of, list):
self.exactly_one_of = [self.exactly_one_of] if self.exactly_one_of is not None else []
self.exactly_one_of = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.exactly_one_of]
if not isinstance(self.none_of, list):
self.none_of = [self.none_of] if self.none_of is not None else []
self.none_of = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.none_of]
if not isinstance(self.all_of, list):
self.all_of = [self.all_of] if self.all_of is not None else []
self.all_of = [v if isinstance(v, AnonymousClassExpression) else AnonymousClassExpression(**as_dict(v)) for v in self.all_of]
self._normalize_inlined_as_dict(slot_name="slot_conditions", slot_type=SlotDefinition, key_name="name", keyed=True)
super().__post_init__(**kwargs)
class ClassLevelRule(YAMLRoot):
"""
A rule that is applied to classes
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["ClassLevelRule"]
class_class_curie: ClassVar[str] = "linkml:ClassLevelRule"
class_name: ClassVar[str] = "class_level_rule"
class_model_uri: ClassVar[URIRef] = LINKML.ClassLevelRule
@dataclass(repr=False)
class ClassRule(ClassLevelRule):
"""
A rule that applies to instances of a class
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["ClassRule"]
class_class_curie: ClassVar[str] = "linkml:ClassRule"
class_name: ClassVar[str] = "class_rule"
class_model_uri: ClassVar[URIRef] = LINKML.ClassRule
preconditions: Optional[Union[dict, AnonymousClassExpression]] = None
postconditions: Optional[Union[dict, AnonymousClassExpression]] = None
elseconditions: Optional[Union[dict, AnonymousClassExpression]] = None
bidirectional: Optional[Union[bool, Bool]] = None
open_world: Optional[Union[bool, Bool]] = None
rank: Optional[int] = None
deactivated: Optional[Union[bool, Bool]] = None
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, "AltDescription"]], list[Union[dict, "AltDescription"]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, "Example"], list[Union[dict, "Example"]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, StructuredAlias], list[Union[dict, StructuredAlias]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.preconditions is not None and not isinstance(self.preconditions, AnonymousClassExpression):
self.preconditions = AnonymousClassExpression(**as_dict(self.preconditions))
if self.postconditions is not None and not isinstance(self.postconditions, AnonymousClassExpression):
self.postconditions = AnonymousClassExpression(**as_dict(self.postconditions))
if self.elseconditions is not None and not isinstance(self.elseconditions, AnonymousClassExpression):
self.elseconditions = AnonymousClassExpression(**as_dict(self.elseconditions))
if self.bidirectional is not None and not isinstance(self.bidirectional, Bool):
self.bidirectional = Bool(self.bidirectional)
if self.open_world is not None and not isinstance(self.open_world, Bool):
self.open_world = Bool(self.open_world)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if self.deactivated is not None and not isinstance(self.deactivated, Bool):
self.deactivated = Bool(self.deactivated)
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
[docs]@dataclass(repr=False)
class ArrayExpression(YAMLRoot):
"""
defines the dimensions of an array
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["ArrayExpression"]
class_class_curie: ClassVar[str] = "linkml:ArrayExpression"
class_name: ClassVar[str] = "array_expression"
class_model_uri: ClassVar[URIRef] = LINKML.ArrayExpression
exact_number_dimensions: Optional[int] = None
minimum_number_dimensions: Optional[int] = None
maximum_number_dimensions: Optional[Union[dict, Anything]] = None
dimensions: Optional[Union[Union[dict, "DimensionExpression"], list[Union[dict, "DimensionExpression"]]]] = empty_list()
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, "AltDescription"]], list[Union[dict, "AltDescription"]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, "Example"], list[Union[dict, "Example"]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, StructuredAlias], list[Union[dict, StructuredAlias]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.exact_number_dimensions is not None and not isinstance(self.exact_number_dimensions, int):
self.exact_number_dimensions = int(self.exact_number_dimensions)
if self.minimum_number_dimensions is not None and not isinstance(self.minimum_number_dimensions, int):
self.minimum_number_dimensions = int(self.minimum_number_dimensions)
if not isinstance(self.dimensions, list):
self.dimensions = [self.dimensions] if self.dimensions is not None else []
self.dimensions = [v if isinstance(v, DimensionExpression) else DimensionExpression(**as_dict(v)) for v in self.dimensions]
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
[docs]@dataclass(repr=False)
class DimensionExpression(YAMLRoot):
"""
defines one of the dimensions of an array
"""
_inherited_slots: ClassVar[list[str]] = ["maximum_cardinality", "minimum_cardinality", "exact_cardinality"]
class_class_uri: ClassVar[URIRef] = LINKML["DimensionExpression"]
class_class_curie: ClassVar[str] = "linkml:DimensionExpression"
class_name: ClassVar[str] = "dimension_expression"
class_model_uri: ClassVar[URIRef] = LINKML.DimensionExpression
alias: Optional[str] = None
maximum_cardinality: Optional[int] = None
minimum_cardinality: Optional[int] = None
exact_cardinality: Optional[int] = None
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, "AltDescription"]], list[Union[dict, "AltDescription"]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, "Example"], list[Union[dict, "Example"]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, StructuredAlias], list[Union[dict, StructuredAlias]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.alias is not None and not isinstance(self.alias, str):
self.alias = str(self.alias)
if self.maximum_cardinality is not None and not isinstance(self.maximum_cardinality, int):
self.maximum_cardinality = int(self.maximum_cardinality)
if self.minimum_cardinality is not None and not isinstance(self.minimum_cardinality, int):
self.minimum_cardinality = int(self.minimum_cardinality)
if self.exact_cardinality is not None and not isinstance(self.exact_cardinality, int):
self.exact_cardinality = int(self.exact_cardinality)
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class PatternExpression(YAMLRoot):
"""
a regular expression pattern used to evaluate conformance of a string
"""
_inherited_slots: ClassVar[list[str]] = ["syntax"]
class_class_uri: ClassVar[URIRef] = LINKML["PatternExpression"]
class_class_curie: ClassVar[str] = "linkml:PatternExpression"
class_name: ClassVar[str] = "pattern_expression"
class_model_uri: ClassVar[URIRef] = LINKML.PatternExpression
syntax: Optional[str] = None
interpolated: Optional[Union[bool, Bool]] = None
partial_match: Optional[Union[bool, Bool]] = None
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, "AltDescription"]], list[Union[dict, "AltDescription"]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, "Example"], list[Union[dict, "Example"]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, StructuredAlias], list[Union[dict, StructuredAlias]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.syntax is not None and not isinstance(self.syntax, str):
self.syntax = str(self.syntax)
if self.interpolated is not None and not isinstance(self.interpolated, Bool):
self.interpolated = Bool(self.interpolated)
if self.partial_match is not None and not isinstance(self.partial_match, Bool):
self.partial_match = Bool(self.partial_match)
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class ImportExpression(YAMLRoot):
"""
an expression describing an import
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["ImportExpression"]
class_class_curie: ClassVar[str] = "linkml:ImportExpression"
class_name: ClassVar[str] = "import_expression"
class_model_uri: ClassVar[URIRef] = LINKML.ImportExpression
import_from: Union[str, URIorCURIE] = None
import_as: Optional[Union[str, NCName]] = None
import_map: Optional[Union[dict[Union[str, SettingSettingKey], Union[dict, "Setting"]], list[Union[dict, "Setting"]]]] = empty_dict()
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, "AltDescription"]], list[Union[dict, "AltDescription"]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, "Example"], list[Union[dict, "Example"]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, StructuredAlias], list[Union[dict, StructuredAlias]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.import_from):
self.MissingRequiredField("import_from")
if not isinstance(self.import_from, URIorCURIE):
self.import_from = URIorCURIE(self.import_from)
if self.import_as is not None and not isinstance(self.import_as, NCName):
self.import_as = NCName(self.import_as)
self._normalize_inlined_as_dict(slot_name="import_map", slot_type=Setting, key_name="setting_key", keyed=True)
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class Setting(YAMLRoot):
"""
assignment of a key to a value
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["Setting"]
class_class_curie: ClassVar[str] = "linkml:Setting"
class_name: ClassVar[str] = "setting"
class_model_uri: ClassVar[URIRef] = LINKML.Setting
setting_key: Union[str, SettingSettingKey] = None
setting_value: str = None
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.setting_key):
self.MissingRequiredField("setting_key")
if not isinstance(self.setting_key, SettingSettingKey):
self.setting_key = SettingSettingKey(self.setting_key)
if self._is_empty(self.setting_value):
self.MissingRequiredField("setting_value")
if not isinstance(self.setting_value, str):
self.setting_value = str(self.setting_value)
super().__post_init__(**kwargs)
@dataclass(repr=False)
class Prefix(YAMLRoot):
"""
prefix URI tuple
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["Prefix"]
class_class_curie: ClassVar[str] = "linkml:Prefix"
class_name: ClassVar[str] = "prefix"
class_model_uri: ClassVar[URIRef] = LINKML.Prefix
prefix_prefix: Union[str, PrefixPrefixPrefix] = None
prefix_reference: Union[str, URI] = None
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.prefix_prefix):
self.MissingRequiredField("prefix_prefix")
if not isinstance(self.prefix_prefix, PrefixPrefixPrefix):
self.prefix_prefix = PrefixPrefixPrefix(self.prefix_prefix)
if self._is_empty(self.prefix_reference):
self.MissingRequiredField("prefix_reference")
if not isinstance(self.prefix_reference, URI):
self.prefix_reference = URI(self.prefix_reference)
super().__post_init__(**kwargs)
@dataclass(repr=False)
class LocalName(YAMLRoot):
"""
an attributed label
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["LocalName"]
class_class_curie: ClassVar[str] = "linkml:LocalName"
class_name: ClassVar[str] = "local_name"
class_model_uri: ClassVar[URIRef] = LINKML.LocalName
local_name_source: Union[str, LocalNameLocalNameSource] = None
local_name_value: str = None
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.local_name_source):
self.MissingRequiredField("local_name_source")
if not isinstance(self.local_name_source, LocalNameLocalNameSource):
self.local_name_source = LocalNameLocalNameSource(self.local_name_source)
if self._is_empty(self.local_name_value):
self.MissingRequiredField("local_name_value")
if not isinstance(self.local_name_value, str):
self.local_name_value = str(self.local_name_value)
super().__post_init__(**kwargs)
@dataclass(repr=False)
class Example(YAMLRoot):
"""
usage example and description
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["Example"]
class_class_curie: ClassVar[str] = "linkml:Example"
class_name: ClassVar[str] = "example"
class_model_uri: ClassVar[URIRef] = LINKML.Example
value: Optional[str] = None
description: Optional[str] = None
object: Optional[Union[dict, Anything]] = None
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self.value is not None and not isinstance(self.value, str):
self.value = str(self.value)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
super().__post_init__(**kwargs)
@dataclass(repr=False)
class AltDescription(YAMLRoot):
"""
an attributed description
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["AltDescription"]
class_class_curie: ClassVar[str] = "linkml:AltDescription"
class_name: ClassVar[str] = "alt_description"
class_model_uri: ClassVar[URIRef] = LINKML.AltDescription
source: Union[str, AltDescriptionSource] = None
description: str = None
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.source):
self.MissingRequiredField("source")
if not isinstance(self.source, AltDescriptionSource):
self.source = AltDescriptionSource(self.source)
if self._is_empty(self.description):
self.MissingRequiredField("description")
if not isinstance(self.description, str):
self.description = str(self.description)
super().__post_init__(**kwargs)
@dataclass(repr=False)
class PermissibleValue(YAMLRoot):
"""
a permissible value, accompanied by intended text and an optional mapping to a concept URI
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["PermissibleValue"]
class_class_curie: ClassVar[str] = "linkml:PermissibleValue"
class_name: ClassVar[str] = "permissible_value"
class_model_uri: ClassVar[URIRef] = LINKML.PermissibleValue
text: Union[str, PermissibleValueText] = None
description: Optional[str] = None
meaning: Optional[Union[str, URIorCURIE]] = None
unit: Optional[Union[dict, UnitOfMeasure]] = None
instantiates: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
implements: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
is_a: Optional[Union[str, PermissibleValueText]] = None
mixins: Optional[Union[Union[str, PermissibleValueText], list[Union[str, PermissibleValueText]]]] = empty_list()
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, AltDescription]], list[Union[dict, AltDescription]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, Example], list[Union[dict, Example]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, StructuredAlias], list[Union[dict, StructuredAlias]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.text):
self.MissingRequiredField("text")
if not isinstance(self.text, PermissibleValueText):
self.text = PermissibleValueText(self.text)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
if self.meaning is not None and not isinstance(self.meaning, URIorCURIE):
self.meaning = URIorCURIE(self.meaning)
if self.unit is not None and not isinstance(self.unit, UnitOfMeasure):
self.unit = UnitOfMeasure(**as_dict(self.unit))
if not isinstance(self.instantiates, list):
self.instantiates = [self.instantiates] if self.instantiates is not None else []
self.instantiates = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.instantiates]
if not isinstance(self.implements, list):
self.implements = [self.implements] if self.implements is not None else []
self.implements = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.implements]
if self.is_a is not None and not isinstance(self.is_a, PermissibleValueText):
self.is_a = PermissibleValueText(self.is_a)
if not isinstance(self.mixins, list):
self.mixins = [self.mixins] if self.mixins is not None else []
self.mixins = [v if isinstance(v, PermissibleValueText) else PermissibleValueText(v) for v in self.mixins]
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
@dataclass(repr=False)
class UniqueKey(YAMLRoot):
"""
a collection of slots whose values uniquely identify an instance of a class
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["UniqueKey"]
class_class_curie: ClassVar[str] = "linkml:UniqueKey"
class_name: ClassVar[str] = "unique_key"
class_model_uri: ClassVar[URIRef] = LINKML.UniqueKey
unique_key_name: Union[str, UniqueKeyUniqueKeyName] = None
unique_key_slots: Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]] = None
consider_nulls_inequal: Optional[Union[bool, Bool]] = None
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, AltDescription]], list[Union[dict, AltDescription]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, Example], list[Union[dict, Example]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, StructuredAlias], list[Union[dict, StructuredAlias]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.unique_key_name):
self.MissingRequiredField("unique_key_name")
if not isinstance(self.unique_key_name, UniqueKeyUniqueKeyName):
self.unique_key_name = UniqueKeyUniqueKeyName(self.unique_key_name)
if self._is_empty(self.unique_key_slots):
self.MissingRequiredField("unique_key_slots")
if not isinstance(self.unique_key_slots, list):
self.unique_key_slots = [self.unique_key_slots] if self.unique_key_slots is not None else []
self.unique_key_slots = [v if isinstance(v, SlotDefinitionName) else SlotDefinitionName(v) for v in self.unique_key_slots]
if self.consider_nulls_inequal is not None and not isinstance(self.consider_nulls_inequal, Bool):
self.consider_nulls_inequal = Bool(self.consider_nulls_inequal)
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
@dataclass
class TypeMapping(YAMLRoot):
"""
Represents how a slot or type can be serialized to a format.
"""
_inherited_slots: ClassVar[list[str]] = []
class_class_uri: ClassVar[URIRef] = LINKML["TypeMapping"]
class_class_curie: ClassVar[str] = "linkml:TypeMapping"
class_name: ClassVar[str] = "type_mapping"
class_model_uri: ClassVar[URIRef] = LINKML.TypeMapping
framework: Union[str, TypeMappingFramework] = None
type: Optional[Union[str, TypeDefinitionName]] = None
string_serialization: Optional[str] = None
extensions: Optional[Union[dict[Union[str, ExtensionTag], Union[dict, Extension]], list[Union[dict, Extension]]]] = empty_dict()
annotations: Optional[Union[dict[Union[str, AnnotationTag], Union[dict, Annotation]], list[Union[dict, Annotation]]]] = empty_dict()
description: Optional[str] = None
alt_descriptions: Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, AltDescription]], list[Union[dict, AltDescription]]]] = empty_dict()
title: Optional[str] = None
deprecated: Optional[str] = None
todos: Optional[Union[str, list[str]]] = empty_list()
notes: Optional[Union[str, list[str]]] = empty_list()
comments: Optional[Union[str, list[str]]] = empty_list()
examples: Optional[Union[Union[dict, Example], list[Union[dict, Example]]]] = empty_list()
in_subset: Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]] = empty_list()
from_schema: Optional[Union[str, URI]] = None
imported_from: Optional[str] = None
source: Optional[Union[str, URIorCURIE]] = None
in_language: Optional[str] = None
see_also: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
deprecated_element_has_exact_replacement: Optional[Union[str, URIorCURIE]] = None
deprecated_element_has_possible_replacement: Optional[Union[str, URIorCURIE]] = None
aliases: Optional[Union[str, list[str]]] = empty_list()
structured_aliases: Optional[Union[Union[dict, StructuredAlias], list[Union[dict, StructuredAlias]]]] = empty_list()
mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
exact_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
close_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
related_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
narrow_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
broad_mappings: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_by: Optional[Union[str, URIorCURIE]] = None
contributors: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
created_on: Optional[Union[str, XSDDateTime]] = None
last_updated_on: Optional[Union[str, XSDDateTime]] = None
modified_by: Optional[Union[str, URIorCURIE]] = None
status: Optional[Union[str, URIorCURIE]] = None
rank: Optional[int] = None
categories: Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]] = empty_list()
keywords: Optional[Union[str, list[str]]] = empty_list()
def __post_init__(self, *_: list[str], **kwargs: dict[str, Any]):
if self._is_empty(self.framework):
self.MissingRequiredField("framework")
if not isinstance(self.framework, TypeMappingFramework):
self.framework = TypeMappingFramework(self.framework)
if self.type is not None and not isinstance(self.type, TypeDefinitionName):
self.type = TypeDefinitionName(self.type)
if self.string_serialization is not None and not isinstance(self.string_serialization, str):
self.string_serialization = str(self.string_serialization)
self._normalize_inlined_as_dict(slot_name="extensions", slot_type=Extension, key_name="tag", keyed=True)
self._normalize_inlined_as_dict(slot_name="annotations", slot_type=Annotation, key_name="tag", keyed=True)
if self.description is not None and not isinstance(self.description, str):
self.description = str(self.description)
self._normalize_inlined_as_dict(slot_name="alt_descriptions", slot_type=AltDescription, key_name="source", keyed=True)
if self.title is not None and not isinstance(self.title, str):
self.title = str(self.title)
if self.deprecated is not None and not isinstance(self.deprecated, str):
self.deprecated = str(self.deprecated)
if not isinstance(self.todos, list):
self.todos = [self.todos] if self.todos is not None else []
self.todos = [v if isinstance(v, str) else str(v) for v in self.todos]
if not isinstance(self.notes, list):
self.notes = [self.notes] if self.notes is not None else []
self.notes = [v if isinstance(v, str) else str(v) for v in self.notes]
if not isinstance(self.comments, list):
self.comments = [self.comments] if self.comments is not None else []
self.comments = [v if isinstance(v, str) else str(v) for v in self.comments]
if not isinstance(self.examples, list):
self.examples = [self.examples] if self.examples is not None else []
self.examples = [v if isinstance(v, Example) else Example(**as_dict(v)) for v in self.examples]
if not isinstance(self.in_subset, list):
self.in_subset = [self.in_subset] if self.in_subset is not None else []
self.in_subset = [v if isinstance(v, SubsetDefinitionName) else SubsetDefinitionName(v) for v in self.in_subset]
if self.from_schema is not None and not isinstance(self.from_schema, URI):
self.from_schema = URI(self.from_schema)
if self.imported_from is not None and not isinstance(self.imported_from, str):
self.imported_from = str(self.imported_from)
if self.source is not None and not isinstance(self.source, URIorCURIE):
self.source = URIorCURIE(self.source)
if self.in_language is not None and not isinstance(self.in_language, str):
self.in_language = str(self.in_language)
if not isinstance(self.see_also, list):
self.see_also = [self.see_also] if self.see_also is not None else []
self.see_also = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.see_also]
if self.deprecated_element_has_exact_replacement is not None and not isinstance(self.deprecated_element_has_exact_replacement, URIorCURIE):
self.deprecated_element_has_exact_replacement = URIorCURIE(self.deprecated_element_has_exact_replacement)
if self.deprecated_element_has_possible_replacement is not None and not isinstance(self.deprecated_element_has_possible_replacement, URIorCURIE):
self.deprecated_element_has_possible_replacement = URIorCURIE(self.deprecated_element_has_possible_replacement)
if not isinstance(self.aliases, list):
self.aliases = [self.aliases] if self.aliases is not None else []
self.aliases = [v if isinstance(v, str) else str(v) for v in self.aliases]
self._normalize_inlined_as_dict(slot_name="structured_aliases", slot_type=StructuredAlias, key_name="literal_form", keyed=False)
if not isinstance(self.mappings, list):
self.mappings = [self.mappings] if self.mappings is not None else []
self.mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.mappings]
if not isinstance(self.exact_mappings, list):
self.exact_mappings = [self.exact_mappings] if self.exact_mappings is not None else []
self.exact_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.exact_mappings]
if not isinstance(self.close_mappings, list):
self.close_mappings = [self.close_mappings] if self.close_mappings is not None else []
self.close_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.close_mappings]
if not isinstance(self.related_mappings, list):
self.related_mappings = [self.related_mappings] if self.related_mappings is not None else []
self.related_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.related_mappings]
if not isinstance(self.narrow_mappings, list):
self.narrow_mappings = [self.narrow_mappings] if self.narrow_mappings is not None else []
self.narrow_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.narrow_mappings]
if not isinstance(self.broad_mappings, list):
self.broad_mappings = [self.broad_mappings] if self.broad_mappings is not None else []
self.broad_mappings = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.broad_mappings]
if self.created_by is not None and not isinstance(self.created_by, URIorCURIE):
self.created_by = URIorCURIE(self.created_by)
if not isinstance(self.contributors, list):
self.contributors = [self.contributors] if self.contributors is not None else []
self.contributors = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.contributors]
if self.created_on is not None and not isinstance(self.created_on, XSDDateTime):
self.created_on = XSDDateTime(self.created_on)
if self.last_updated_on is not None and not isinstance(self.last_updated_on, XSDDateTime):
self.last_updated_on = XSDDateTime(self.last_updated_on)
if self.modified_by is not None and not isinstance(self.modified_by, URIorCURIE):
self.modified_by = URIorCURIE(self.modified_by)
if self.status is not None and not isinstance(self.status, URIorCURIE):
self.status = URIorCURIE(self.status)
if self.rank is not None and not isinstance(self.rank, int):
self.rank = int(self.rank)
if not isinstance(self.categories, list):
self.categories = [self.categories] if self.categories is not None else []
self.categories = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.categories]
if not isinstance(self.keywords, list):
self.keywords = [self.keywords] if self.keywords is not None else []
self.keywords = [v if isinstance(v, str) else str(v) for v in self.keywords]
super().__post_init__(**kwargs)
# Enumerations
class PvFormulaOptions(EnumDefinitionImpl):
"""
The formula used to generate the set of permissible values from the code_set values
"""
CODE = PermissibleValue(
text="CODE",
description="The permissible values are the set of possible codes in the code set")
CURIE = PermissibleValue(
text="CURIE",
description="The permissible values are the set of CURIES in the code set")
URI = PermissibleValue(
text="URI",
description="The permissible values are the set of code URIs in the code set")
FHIR_CODING = PermissibleValue(
text="FHIR_CODING",
description="The permissible values are the set of FHIR coding elements derived from the code set")
LABEL = PermissibleValue(
text="LABEL",
description="The permissible values are the set of human readable labels in the code set")
_defn = EnumDefinition(
name="PvFormulaOptions",
description="The formula used to generate the set of permissible values from the code_set values",
)
class PresenceEnum(EnumDefinitionImpl):
"""
enumeration of conditions by which a slot value should be set
"""
UNCOMMITTED = PermissibleValue(text="UNCOMMITTED")
PRESENT = PermissibleValue(text="PRESENT")
ABSENT = PermissibleValue(text="ABSENT")
_defn = EnumDefinition(
name="PresenceEnum",
description="enumeration of conditions by which a slot value should be set",
)
class RelationalRoleEnum(EnumDefinitionImpl):
"""
enumeration of roles a slot on a relationship class can play
"""
SUBJECT = PermissibleValue(
text="SUBJECT",
description="a slot with this role connects a relationship to its subject/source node",
meaning=RDF["subject"])
OBJECT = PermissibleValue(
text="OBJECT",
description="a slot with this role connects a relationship to its object/target node",
meaning=RDF["object"])
PREDICATE = PermissibleValue(
text="PREDICATE",
description="a slot with this role connects a relationship to its predicate/property",
meaning=RDF["predicate"])
NODE = PermissibleValue(
text="NODE",
description="""a slot with this role connects a symmetric relationship to a node that represents either subject or object node""")
OTHER_ROLE = PermissibleValue(
text="OTHER_ROLE",
description="a slot with this role connects a relationship to a node that is not subject/object/predicate")
_defn = EnumDefinition(
name="RelationalRoleEnum",
description="enumeration of roles a slot on a relationship class can play",
)
class AliasPredicateEnum(EnumDefinitionImpl):
"""
permissible values for the relationship between an element and an alias
"""
EXACT_SYNONYM = PermissibleValue(
text="EXACT_SYNONYM",
meaning=SKOS["exactMatch"])
RELATED_SYNONYM = PermissibleValue(
text="RELATED_SYNONYM",
meaning=SKOS["relatedMatch"])
BROAD_SYNONYM = PermissibleValue(
text="BROAD_SYNONYM",
meaning=SKOS["broaderMatch"])
NARROW_SYNONYM = PermissibleValue(
text="NARROW_SYNONYM",
meaning=SKOS["narrowerMatch"])
_defn = EnumDefinition(
name="AliasPredicateEnum",
description="permissible values for the relationship between an element and an alias",
)
class ObligationLevelEnum(EnumDefinitionImpl):
"""
The level of obligation or recommendation strength for a metadata element
"""
REQUIRED = PermissibleValue(
text="REQUIRED",
description="The metadata element is required to be present in the model")
RECOMMENDED = PermissibleValue(
text="RECOMMENDED",
description="The metadata element is recommended to be present in the model")
OPTIONAL = PermissibleValue(
text="OPTIONAL",
description="The metadata element is optional to be present in the model")
EXAMPLE = PermissibleValue(
text="EXAMPLE",
description="The metadata element is an example of how to use the model")
DISCOURAGED = PermissibleValue(
text="DISCOURAGED",
description="The metadata element is allowed but discouraged to be present in the model")
_defn = EnumDefinition(
name="ObligationLevelEnum",
description="The level of obligation or recommendation strength for a metadata element",
)
# Slots
class slots:
pass
slots.name = Slot(uri=RDFS.label, name="name", curie=RDFS.curie('label'),
model_uri=LINKML.name, domain=Element, range=Union[str, ElementName])
slots.title = Slot(uri=DCTERMS.title, name="title", curie=DCTERMS.curie('title'),
model_uri=LINKML.title, domain=Element, range=Optional[str])
slots.conforms_to = Slot(uri=DCTERMS.conformsTo, name="conforms_to", curie=DCTERMS.curie('conformsTo'),
model_uri=LINKML.conforms_to, domain=Element, range=Optional[str])
slots.implements = Slot(uri=LINKML.implements, name="implements", curie=LINKML.curie('implements'),
model_uri=LINKML.implements, domain=Element, range=Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]])
slots.instantiates = Slot(uri=LINKML.instantiates, name="instantiates", curie=LINKML.curie('instantiates'),
model_uri=LINKML.instantiates, domain=Element, range=Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]])
slots.categories = Slot(uri=DCTERMS.subject, name="categories", curie=DCTERMS.curie('subject'),
model_uri=LINKML.categories, domain=None, range=Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]])
slots.keywords = Slot(uri=SCHEMA.keywords, name="keywords", curie=SCHEMA.curie('keywords'),
model_uri=LINKML.keywords, domain=Element, range=Optional[Union[str, list[str]]])
slots.definition_uri = Slot(uri=LINKML.definition_uri, name="definition_uri", curie=LINKML.curie('definition_uri'),
model_uri=LINKML.definition_uri, domain=Element, range=Optional[Union[str, URIorCURIE]])
slots.id_prefixes = Slot(uri=LINKML.id_prefixes, name="id_prefixes", curie=LINKML.curie('id_prefixes'),
model_uri=LINKML.id_prefixes, domain=Element, range=Optional[Union[Union[str, NCName], list[Union[str, NCName]]]])
slots.id_prefixes_are_closed = Slot(uri=LINKML.id_prefixes_are_closed, name="id_prefixes_are_closed", curie=LINKML.curie('id_prefixes_are_closed'),
model_uri=LINKML.id_prefixes_are_closed, domain=Element, range=Optional[Union[bool, Bool]])
slots.description = Slot(uri=SKOS.definition, name="description", curie=SKOS.curie('definition'),
model_uri=LINKML.description, domain=Element, range=Optional[str])
slots.structured_aliases = Slot(uri=SKOSXL.altLabel, name="structured_aliases", curie=SKOSXL.curie('altLabel'),
model_uri=LINKML.structured_aliases, domain=None, range=Optional[Union[Union[dict, StructuredAlias], list[Union[dict, StructuredAlias]]]])
slots.aliases = Slot(uri=SKOS.altLabel, name="aliases", curie=SKOS.curie('altLabel'),
model_uri=LINKML.aliases, domain=Element, range=Optional[Union[str, list[str]]])
slots.deprecated = Slot(uri=LINKML.deprecated, name="deprecated", curie=LINKML.curie('deprecated'),
model_uri=LINKML.deprecated, domain=Element, range=Optional[str])
slots.todos = Slot(uri=LINKML.todos, name="todos", curie=LINKML.curie('todos'),
model_uri=LINKML.todos, domain=Element, range=Optional[Union[str, list[str]]])
slots.notes = Slot(uri=SKOS.editorialNote, name="notes", curie=SKOS.curie('editorialNote'),
model_uri=LINKML.notes, domain=Element, range=Optional[Union[str, list[str]]])
slots.comments = Slot(uri=SKOS.note, name="comments", curie=SKOS.curie('note'),
model_uri=LINKML.comments, domain=Element, range=Optional[Union[str, list[str]]])
slots.in_subset = Slot(uri=OIO.inSubset, name="in_subset", curie=OIO.curie('inSubset'),
model_uri=LINKML.in_subset, domain=Element, range=Optional[Union[Union[str, SubsetDefinitionName], list[Union[str, SubsetDefinitionName]]]])
slots.from_schema = Slot(uri=SKOS.inScheme, name="from_schema", curie=SKOS.curie('inScheme'),
model_uri=LINKML.from_schema, domain=Element, range=Optional[Union[str, URI]])
slots.imported_from = Slot(uri=LINKML.imported_from, name="imported_from", curie=LINKML.curie('imported_from'),
model_uri=LINKML.imported_from, domain=Element, range=Optional[str])
slots.see_also = Slot(uri=RDFS.seeAlso, name="see_also", curie=RDFS.curie('seeAlso'),
model_uri=LINKML.see_also, domain=Element, range=Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]])
slots.owned_by = Slot(uri=LINKML.owned_by, name="owned_by", curie=LINKML.curie('owned_by'),
model_uri=LINKML.owned_by, domain=Element, range=Optional[Union[str, URIorCURIE]])
slots.created_by = Slot(uri=PAV.createdBy, name="created_by", curie=PAV.curie('createdBy'),
model_uri=LINKML.created_by, domain=Element, range=Optional[Union[str, URIorCURIE]])
slots.contributors = Slot(uri=DCTERMS.contributor, name="contributors", curie=DCTERMS.curie('contributor'),
model_uri=LINKML.contributors, domain=Element, range=Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]])
slots.created_on = Slot(uri=PAV.createdOn, name="created_on", curie=PAV.curie('createdOn'),
model_uri=LINKML.created_on, domain=Element, range=Optional[Union[str, XSDDateTime]])
slots.last_updated_on = Slot(uri=PAV.lastUpdatedOn, name="last_updated_on", curie=PAV.curie('lastUpdatedOn'),
model_uri=LINKML.last_updated_on, domain=Element, range=Optional[Union[str, XSDDateTime]])
slots.modified_by = Slot(uri=OSLC.modifiedBy, name="modified_by", curie=OSLC.curie('modifiedBy'),
model_uri=LINKML.modified_by, domain=Element, range=Optional[Union[str, URIorCURIE]])
slots.status = Slot(uri=BIBO.status, name="status", curie=BIBO.curie('status'),
model_uri=LINKML.status, domain=Element, range=Optional[Union[str, URIorCURIE]])
slots.literal_form = Slot(uri=SKOSXL.literalForm, name="literal_form", curie=SKOSXL.curie('literalForm'),
model_uri=LINKML.literal_form, domain=StructuredAlias, range=str)
slots.alias_predicate = Slot(uri=RDF.predicate, name="alias_predicate", curie=RDF.curie('predicate'),
model_uri=LINKML.alias_predicate, domain=StructuredAlias, range=Optional[Union[str, "AliasPredicateEnum"]])
slots.alias_contexts = Slot(uri=LINKML.contexts, name="alias_contexts", curie=LINKML.curie('contexts'),
model_uri=LINKML.alias_contexts, domain=StructuredAlias, range=Optional[Union[Union[str, URI], list[Union[str, URI]]]])
slots.in_language = Slot(uri=SCHEMA.inLanguage, name="in_language", curie=SCHEMA.curie('inLanguage'),
model_uri=LINKML.in_language, domain=None, range=Optional[str])
slots.source = Slot(uri=DCTERMS.source, name="source", curie=DCTERMS.curie('source'),
model_uri=LINKML.source, domain=Element, range=Optional[Union[str, URIorCURIE]])
slots.publisher = Slot(uri=DCTERMS.publisher, name="publisher", curie=DCTERMS.curie('publisher'),
model_uri=LINKML.publisher, domain=Element, range=Optional[Union[str, URIorCURIE]])
slots.is_a = Slot(uri=LINKML.is_a, name="is_a", curie=LINKML.curie('is_a'),
model_uri=LINKML.is_a, domain=None, range=Optional[Union[str, DefinitionName]])
slots.abstract = Slot(uri=LINKML.abstract, name="abstract", curie=LINKML.curie('abstract'),
model_uri=LINKML.abstract, domain=Definition, range=Optional[Union[bool, Bool]])
slots.mixin = Slot(uri=LINKML.mixin, name="mixin", curie=LINKML.curie('mixin'),
model_uri=LINKML.mixin, domain=Definition, range=Optional[Union[bool, Bool]])
slots.mixins = Slot(uri=LINKML.mixins, name="mixins", curie=LINKML.curie('mixins'),
model_uri=LINKML.mixins, domain=None, range=Optional[Union[Union[str, DefinitionName], list[Union[str, DefinitionName]]]])
slots.apply_to = Slot(uri=LINKML.apply_to, name="apply_to", curie=LINKML.curie('apply_to'),
model_uri=LINKML.apply_to, domain=Definition, range=Optional[Union[Union[str, DefinitionName], list[Union[str, DefinitionName]]]])
slots.values_from = Slot(uri=LINKML.values_from, name="values_from", curie=LINKML.curie('values_from'),
model_uri=LINKML.values_from, domain=Definition, range=Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]])
slots.code_set = Slot(uri=LINKML.code_set, name="code_set", curie=LINKML.curie('code_set'),
model_uri=LINKML.code_set, domain=EnumExpression, range=Optional[Union[str, URIorCURIE]])
slots.code_set_version = Slot(uri=LINKML.code_set_version, name="code_set_version", curie=LINKML.curie('code_set_version'),
model_uri=LINKML.code_set_version, domain=EnumExpression, range=Optional[str])
slots.code_set_tag = Slot(uri=LINKML.code_set_tag, name="code_set_tag", curie=LINKML.curie('code_set_tag'),
model_uri=LINKML.code_set_tag, domain=EnumExpression, range=Optional[str])
slots.pv_formula = Slot(uri=LINKML.pv_formula, name="pv_formula", curie=LINKML.curie('pv_formula'),
model_uri=LINKML.pv_formula, domain=None, range=Optional[Union[str, "PvFormulaOptions"]])
slots.permissible_values = Slot(uri=LINKML.permissible_values, name="permissible_values", curie=LINKML.curie('permissible_values'),
model_uri=LINKML.permissible_values, domain=EnumExpression, range=Optional[Union[dict[Union[str, PermissibleValueText], Union[dict, "PermissibleValue"]], list[Union[dict, "PermissibleValue"]]]])
slots.enum_uri = Slot(uri=LINKML.enum_uri, name="enum_uri", curie=LINKML.curie('enum_uri'),
model_uri=LINKML.enum_uri, domain=EnumDefinition, range=Optional[Union[str, URIorCURIE]])
slots.include = Slot(uri=LINKML.include, name="include", curie=LINKML.curie('include'),
model_uri=LINKML.include, domain=EnumExpression, range=Optional[Union[Union[dict, "AnonymousEnumExpression"], list[Union[dict, "AnonymousEnumExpression"]]]])
slots.minus = Slot(uri=LINKML.minus, name="minus", curie=LINKML.curie('minus'),
model_uri=LINKML.minus, domain=EnumExpression, range=Optional[Union[Union[dict, "AnonymousEnumExpression"], list[Union[dict, "AnonymousEnumExpression"]]]])
slots.inherits = Slot(uri=LINKML.inherits, name="inherits", curie=LINKML.curie('inherits'),
model_uri=LINKML.inherits, domain=EnumExpression, range=Optional[Union[Union[str, EnumDefinitionName], list[Union[str, EnumDefinitionName]]]])
slots.matches = Slot(uri=LINKML.matches, name="matches", curie=LINKML.curie('matches'),
model_uri=LINKML.matches, domain=EnumExpression, range=Optional[Union[dict, "MatchQuery"]])
slots.identifier_pattern = Slot(uri=LINKML.identifier_pattern, name="identifier_pattern", curie=LINKML.curie('identifier_pattern'),
model_uri=LINKML.identifier_pattern, domain=MatchQuery, range=Optional[str])
slots.concepts = Slot(uri=LINKML.concepts, name="concepts", curie=LINKML.curie('concepts'),
model_uri=LINKML.concepts, domain=EnumExpression, range=Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]])
slots.reachable_from = Slot(uri=LINKML.reachable_from, name="reachable_from", curie=LINKML.curie('reachable_from'),
model_uri=LINKML.reachable_from, domain=EnumExpression, range=Optional[Union[dict, "ReachabilityQuery"]])
slots.source_ontology = Slot(uri=LINKML.source_ontology, name="source_ontology", curie=LINKML.curie('source_ontology'),
model_uri=LINKML.source_ontology, domain=None, range=Optional[Union[str, URIorCURIE]])
slots.is_direct = Slot(uri=LINKML.is_direct, name="is_direct", curie=LINKML.curie('is_direct'),
model_uri=LINKML.is_direct, domain=ReachabilityQuery, range=Optional[Union[bool, Bool]])
slots.traverse_up = Slot(uri=LINKML.traverse_up, name="traverse_up", curie=LINKML.curie('traverse_up'),
model_uri=LINKML.traverse_up, domain=ReachabilityQuery, range=Optional[Union[bool, Bool]])
slots.include_self = Slot(uri=LINKML.include_self, name="include_self", curie=LINKML.curie('include_self'),
model_uri=LINKML.include_self, domain=ReachabilityQuery, range=Optional[Union[bool, Bool]])
slots.relationship_types = Slot(uri=LINKML.relationship_types, name="relationship_types", curie=LINKML.curie('relationship_types'),
model_uri=LINKML.relationship_types, domain=ReachabilityQuery, range=Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]])
slots.source_nodes = Slot(uri=LINKML.source_nodes, name="source_nodes", curie=LINKML.curie('source_nodes'),
model_uri=LINKML.source_nodes, domain=ReachabilityQuery, range=Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]])
slots.text = Slot(uri=LINKML.text, name="text", curie=LINKML.curie('text'),
model_uri=LINKML.text, domain=PermissibleValue, range=Union[str, PermissibleValueText])
slots.meaning = Slot(uri=LINKML.meaning, name="meaning", curie=LINKML.curie('meaning'),
model_uri=LINKML.meaning, domain=PermissibleValue, range=Optional[Union[str, URIorCURIE]])
slots.id = Slot(uri=LINKML.id, name="id", curie=LINKML.curie('id'),
model_uri=LINKML.id, domain=SchemaDefinition, range=Union[str, URI])
slots.emit_prefixes = Slot(uri=LINKML.emit_prefixes, name="emit_prefixes", curie=LINKML.curie('emit_prefixes'),
model_uri=LINKML.emit_prefixes, domain=SchemaDefinition, range=Optional[Union[Union[str, NCName], list[Union[str, NCName]]]])
slots.version = Slot(uri=PAV.version, name="version", curie=PAV.curie('version'),
model_uri=LINKML.version, domain=SchemaDefinition, range=Optional[str])
slots.imports = Slot(uri=LINKML.imports, name="imports", curie=LINKML.curie('imports'),
model_uri=LINKML.imports, domain=SchemaDefinition, range=Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]])
slots.structured_imports = Slot(uri=LINKML.structured_imports, name="structured_imports", curie=LINKML.curie('structured_imports'),
model_uri=LINKML.structured_imports, domain=SchemaDefinition, range=Optional[Union[Union[dict, "ImportExpression"], list[Union[dict, "ImportExpression"]]]])
slots.license = Slot(uri=DCTERMS.license, name="license", curie=DCTERMS.curie('license'),
model_uri=LINKML.license, domain=SchemaDefinition, range=Optional[str])
slots.default_curi_maps = Slot(uri=LINKML.default_curi_maps, name="default_curi_maps", curie=LINKML.curie('default_curi_maps'),
model_uri=LINKML.default_curi_maps, domain=SchemaDefinition, range=Optional[Union[str, list[str]]])
slots.default_prefix = Slot(uri=LINKML.default_prefix, name="default_prefix", curie=LINKML.curie('default_prefix'),
model_uri=LINKML.default_prefix, domain=SchemaDefinition, range=Optional[str])
slots.default_range = Slot(uri=LINKML.default_range, name="default_range", curie=LINKML.curie('default_range'),
model_uri=LINKML.default_range, domain=SchemaDefinition, range=Optional[Union[str, TypeDefinitionName]])
slots.subsets = Slot(uri=LINKML.subsets, name="subsets", curie=LINKML.curie('subsets'),
model_uri=LINKML.subsets, domain=SchemaDefinition, range=Optional[Union[dict[Union[str, SubsetDefinitionName], Union[dict, "SubsetDefinition"]], list[Union[dict, "SubsetDefinition"]]]])
slots.types = Slot(uri=LINKML.types, name="types", curie=LINKML.curie('types'),
model_uri=LINKML.types, domain=SchemaDefinition, range=Optional[Union[dict[Union[str, TypeDefinitionName], Union[dict, "TypeDefinition"]], list[Union[dict, "TypeDefinition"]]]])
slots.enums = Slot(uri=LINKML.enums, name="enums", curie=LINKML.curie('enums'),
model_uri=LINKML.enums, domain=SchemaDefinition, range=Optional[Union[dict[Union[str, EnumDefinitionName], Union[dict, "EnumDefinition"]], list[Union[dict, "EnumDefinition"]]]])
slots.slot_definitions = Slot(uri=LINKML.slots, name="slot_definitions", curie=LINKML.curie('slots'),
model_uri=LINKML.slot_definitions, domain=SchemaDefinition, range=Optional[Union[dict[Union[str, SlotDefinitionName], Union[dict, "SlotDefinition"]], list[Union[dict, "SlotDefinition"]]]])
slots.classes = Slot(uri=LINKML.classes, name="classes", curie=LINKML.curie('classes'),
model_uri=LINKML.classes, domain=SchemaDefinition, range=Optional[Union[dict[Union[str, ClassDefinitionName], Union[dict, "ClassDefinition"]], list[Union[dict, "ClassDefinition"]]]])
slots.metamodel_version = Slot(uri=LINKML.metamodel_version, name="metamodel_version", curie=LINKML.curie('metamodel_version'),
model_uri=LINKML.metamodel_version, domain=SchemaDefinition, range=Optional[str])
slots.source_file = Slot(uri=LINKML.source_file, name="source_file", curie=LINKML.curie('source_file'),
model_uri=LINKML.source_file, domain=SchemaDefinition, range=Optional[str])
slots.source_file_date = Slot(uri=LINKML.source_file_date, name="source_file_date", curie=LINKML.curie('source_file_date'),
model_uri=LINKML.source_file_date, domain=SchemaDefinition, range=Optional[Union[str, XSDDateTime]])
slots.source_file_size = Slot(uri=LINKML.source_file_size, name="source_file_size", curie=LINKML.curie('source_file_size'),
model_uri=LINKML.source_file_size, domain=SchemaDefinition, range=Optional[int])
slots.generation_date = Slot(uri=LINKML.generation_date, name="generation_date", curie=LINKML.curie('generation_date'),
model_uri=LINKML.generation_date, domain=SchemaDefinition, range=Optional[Union[str, XSDDateTime]])
slots.slots = Slot(uri=LINKML.slots, name="slots", curie=LINKML.curie('slots'),
model_uri=LINKML.slots, domain=ClassDefinition, range=Optional[Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]]])
slots.slot_usage = Slot(uri=LINKML.slot_usage, name="slot_usage", curie=LINKML.curie('slot_usage'),
model_uri=LINKML.slot_usage, domain=ClassDefinition, range=Optional[Union[dict[Union[str, SlotDefinitionName], Union[dict, SlotDefinition]], list[Union[dict, SlotDefinition]]]])
slots.enum_range = Slot(uri=LINKML.enum_range, name="enum_range", curie=LINKML.curie('enum_range'),
model_uri=LINKML.enum_range, domain=None, range=Optional[Union[dict, EnumExpression]])
slots.range_expression = Slot(uri=LINKML.range_expression, name="range_expression", curie=LINKML.curie('range_expression'),
model_uri=LINKML.range_expression, domain=None, range=Optional[Union[dict, "AnonymousClassExpression"]])
slots.boolean_slot = Slot(uri=LINKML.boolean_slot, name="boolean_slot", curie=LINKML.curie('boolean_slot'),
model_uri=LINKML.boolean_slot, domain=None, range=Optional[Union[Union[dict, Expression], list[Union[dict, Expression]]]])
slots.any_of = Slot(uri=LINKML.any_of, name="any_of", curie=LINKML.curie('any_of'),
model_uri=LINKML.any_of, domain=None, range=Optional[Union[Union[dict, Expression], list[Union[dict, Expression]]]])
slots.exactly_one_of = Slot(uri=LINKML.exactly_one_of, name="exactly_one_of", curie=LINKML.curie('exactly_one_of'),
model_uri=LINKML.exactly_one_of, domain=None, range=Optional[Union[Union[dict, Expression], list[Union[dict, Expression]]]])
slots.none_of = Slot(uri=LINKML.none_of, name="none_of", curie=LINKML.curie('none_of'),
model_uri=LINKML.none_of, domain=None, range=Optional[Union[Union[dict, Expression], list[Union[dict, Expression]]]])
slots.all_of = Slot(uri=LINKML.all_of, name="all_of", curie=LINKML.curie('all_of'),
model_uri=LINKML.all_of, domain=None, range=Optional[Union[Union[dict, Expression], list[Union[dict, Expression]]]])
slots.preconditions = Slot(uri=SH.condition, name="preconditions", curie=SH.curie('condition'),
model_uri=LINKML.preconditions, domain=None, range=Optional[Union[dict, AnonymousClassExpression]])
slots.postconditions = Slot(uri=LINKML.postconditions, name="postconditions", curie=LINKML.curie('postconditions'),
model_uri=LINKML.postconditions, domain=None, range=Optional[Union[dict, AnonymousClassExpression]])
slots.elseconditions = Slot(uri=LINKML.elseconditions, name="elseconditions", curie=LINKML.curie('elseconditions'),
model_uri=LINKML.elseconditions, domain=None, range=Optional[Union[dict, AnonymousClassExpression]])
slots.bidirectional = Slot(uri=LINKML.bidirectional, name="bidirectional", curie=LINKML.curie('bidirectional'),
model_uri=LINKML.bidirectional, domain=None, range=Optional[Union[bool, Bool]])
slots.open_world = Slot(uri=LINKML.open_world, name="open_world", curie=LINKML.curie('open_world'),
model_uri=LINKML.open_world, domain=None, range=Optional[Union[bool, Bool]])
slots.rank = Slot(uri=SH.order, name="rank", curie=SH.curie('order'),
model_uri=LINKML.rank, domain=None, range=Optional[int])
slots.deactivated = Slot(uri=SH.deactivated, name="deactivated", curie=SH.curie('deactivated'),
model_uri=LINKML.deactivated, domain=None, range=Optional[Union[bool, Bool]])
slots.rules = Slot(uri=SH.rule, name="rules", curie=SH.curie('rule'),
model_uri=LINKML.rules, domain=ClassDefinition, range=Optional[Union[Union[dict, "ClassRule"], list[Union[dict, "ClassRule"]]]])
slots.classification_rules = Slot(uri=LINKML.classification_rules, name="classification_rules", curie=LINKML.curie('classification_rules'),
model_uri=LINKML.classification_rules, domain=ClassDefinition, range=Optional[Union[Union[dict, AnonymousClassExpression], list[Union[dict, AnonymousClassExpression]]]])
slots.slot_conditions = Slot(uri=LINKML.slot_conditions, name="slot_conditions", curie=LINKML.curie('slot_conditions'),
model_uri=LINKML.slot_conditions, domain=None, range=Optional[Union[dict[Union[str, SlotDefinitionName], Union[dict, SlotDefinition]], list[Union[dict, SlotDefinition]]]])
slots.attributes = Slot(uri=LINKML.attributes, name="attributes", curie=LINKML.curie('attributes'),
model_uri=LINKML.attributes, domain=ClassDefinition, range=Optional[Union[dict[Union[str, SlotDefinitionName], Union[dict, SlotDefinition]], list[Union[dict, SlotDefinition]]]])
slots.class_uri = Slot(uri=LINKML.class_uri, name="class_uri", curie=LINKML.curie('class_uri'),
model_uri=LINKML.class_uri, domain=ClassDefinition, range=Optional[Union[str, URIorCURIE]])
slots.subclass_of = Slot(uri=LINKML.subclass_of, name="subclass_of", curie=LINKML.curie('subclass_of'),
model_uri=LINKML.subclass_of, domain=ClassDefinition, range=Optional[Union[str, URIorCURIE]])
slots.defining_slots = Slot(uri=LINKML.defining_slots, name="defining_slots", curie=LINKML.curie('defining_slots'),
model_uri=LINKML.defining_slots, domain=ClassDefinition, range=Optional[Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]]])
slots.union_of = Slot(uri=LINKML.union_of, name="union_of", curie=LINKML.curie('union_of'),
model_uri=LINKML.union_of, domain=Element, range=Optional[Union[Union[str, ElementName], list[Union[str, ElementName]]]])
slots.tree_root = Slot(uri=LINKML.tree_root, name="tree_root", curie=LINKML.curie('tree_root'),
model_uri=LINKML.tree_root, domain=ClassDefinition, range=Optional[Union[bool, Bool]])
slots.unique_keys = Slot(uri=LINKML.unique_keys, name="unique_keys", curie=LINKML.curie('unique_keys'),
model_uri=LINKML.unique_keys, domain=ClassDefinition, range=Optional[Union[dict[Union[str, UniqueKeyUniqueKeyName], Union[dict, "UniqueKey"]], list[Union[dict, "UniqueKey"]]]])
slots.unique_key_name = Slot(uri=LINKML.unique_key_name, name="unique_key_name", curie=LINKML.curie('unique_key_name'),
model_uri=LINKML.unique_key_name, domain=UniqueKey, range=Union[str, UniqueKeyUniqueKeyName])
slots.consider_nulls_inequal = Slot(uri=LINKML.consider_nulls_inequal, name="consider_nulls_inequal", curie=LINKML.curie('consider_nulls_inequal'),
model_uri=LINKML.consider_nulls_inequal, domain=UniqueKey, range=Optional[Union[bool, Bool]])
slots.unique_key_slots = Slot(uri=LINKML.unique_key_slots, name="unique_key_slots", curie=LINKML.curie('unique_key_slots'),
model_uri=LINKML.unique_key_slots, domain=UniqueKey, range=Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]])
slots.slot_names_unique = Slot(uri=LINKML.slot_names_unique, name="slot_names_unique", curie=LINKML.curie('slot_names_unique'),
model_uri=LINKML.slot_names_unique, domain=Definition, range=Optional[Union[bool, Bool]])
slots.domain = Slot(uri=LINKML.domain, name="domain", curie=LINKML.curie('domain'),
model_uri=LINKML.domain, domain=SlotDefinition, range=Optional[Union[str, ClassDefinitionName]])
slots.range = Slot(uri=LINKML.range, name="range", curie=LINKML.curie('range'),
model_uri=LINKML.range, domain=SlotDefinition, range=Optional[Union[str, ElementName]])
slots.slot_uri = Slot(uri=LINKML.slot_uri, name="slot_uri", curie=LINKML.curie('slot_uri'),
model_uri=LINKML.slot_uri, domain=SlotDefinition, range=Optional[Union[str, URIorCURIE]])
slots.multivalued = Slot(uri=LINKML.multivalued, name="multivalued", curie=LINKML.curie('multivalued'),
model_uri=LINKML.multivalued, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.array = Slot(uri=LINKML.array, name="array", curie=LINKML.curie('array'),
model_uri=LINKML.array, domain=SlotDefinition, range=Optional[Union[dict, "ArrayExpression"]])
slots.dimensions = Slot(uri=LINKML.dimensions, name="dimensions", curie=LINKML.curie('dimensions'),
model_uri=LINKML.dimensions, domain=ArrayExpression, range=Optional[Union[Union[dict, "DimensionExpression"], list[Union[dict, "DimensionExpression"]]]])
slots.minimum_number_dimensions = Slot(uri=LINKML.minimum_number_dimensions, name="minimum_number_dimensions", curie=LINKML.curie('minimum_number_dimensions'),
model_uri=LINKML.minimum_number_dimensions, domain=ArrayExpression, range=Optional[int])
slots.maximum_number_dimensions = Slot(uri=LINKML.maximum_number_dimensions, name="maximum_number_dimensions", curie=LINKML.curie('maximum_number_dimensions'),
model_uri=LINKML.maximum_number_dimensions, domain=ArrayExpression, range=Optional[Union[dict, Anything]])
slots.exact_number_dimensions = Slot(uri=LINKML.exact_number_dimensions, name="exact_number_dimensions", curie=LINKML.curie('exact_number_dimensions'),
model_uri=LINKML.exact_number_dimensions, domain=ArrayExpression, range=Optional[int])
slots.inherited = Slot(uri=LINKML.inherited, name="inherited", curie=LINKML.curie('inherited'),
model_uri=LINKML.inherited, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.readonly = Slot(uri=LINKML.readonly, name="readonly", curie=LINKML.curie('readonly'),
model_uri=LINKML.readonly, domain=SlotDefinition, range=Optional[str])
slots.ifabsent = Slot(uri=LINKML.ifabsent, name="ifabsent", curie=LINKML.curie('ifabsent'),
model_uri=LINKML.ifabsent, domain=SlotDefinition, range=Optional[str])
slots.implicit_prefix = Slot(uri=LINKML.implicit_prefix, name="implicit_prefix", curie=LINKML.curie('implicit_prefix'),
model_uri=LINKML.implicit_prefix, domain=None, range=Optional[str])
slots.value_specification_constant = Slot(uri=LINKML.value_specification_constant, name="value_specification_constant", curie=LINKML.curie('value_specification_constant'),
model_uri=LINKML.value_specification_constant, domain=None, range=Optional[str])
slots.list_value_specification_constant = Slot(uri=LINKML.list_value_specification_constant, name="list_value_specification_constant", curie=LINKML.curie('list_value_specification_constant'),
model_uri=LINKML.list_value_specification_constant, domain=None, range=Optional[str])
slots.value_presence = Slot(uri=LINKML.value_presence, name="value_presence", curie=LINKML.curie('value_presence'),
model_uri=LINKML.value_presence, domain=SlotDefinition, range=Optional[Union[str, "PresenceEnum"]])
slots.equals_string = Slot(uri=LINKML.equals_string, name="equals_string", curie=LINKML.curie('equals_string'),
model_uri=LINKML.equals_string, domain=None, range=Optional[str])
slots.equals_number = Slot(uri=LINKML.equals_number, name="equals_number", curie=LINKML.curie('equals_number'),
model_uri=LINKML.equals_number, domain=None, range=Optional[int])
slots.equals_expression = Slot(uri=LINKML.equals_expression, name="equals_expression", curie=LINKML.curie('equals_expression'),
model_uri=LINKML.equals_expression, domain=None, range=Optional[str])
slots.exact_cardinality = Slot(uri=LINKML.exact_cardinality, name="exact_cardinality", curie=LINKML.curie('exact_cardinality'),
model_uri=LINKML.exact_cardinality, domain=None, range=Optional[int])
slots.minimum_cardinality = Slot(uri=LINKML.minimum_cardinality, name="minimum_cardinality", curie=LINKML.curie('minimum_cardinality'),
model_uri=LINKML.minimum_cardinality, domain=None, range=Optional[int])
slots.maximum_cardinality = Slot(uri=LINKML.maximum_cardinality, name="maximum_cardinality", curie=LINKML.curie('maximum_cardinality'),
model_uri=LINKML.maximum_cardinality, domain=None, range=Optional[int])
slots.equals_string_in = Slot(uri=LINKML.equals_string_in, name="equals_string_in", curie=LINKML.curie('equals_string_in'),
model_uri=LINKML.equals_string_in, domain=None, range=Optional[Union[str, list[str]]])
slots.equals_number_in = Slot(uri=LINKML.equals_number_in, name="equals_number_in", curie=LINKML.curie('equals_number_in'),
model_uri=LINKML.equals_number_in, domain=None, range=Optional[Union[int, list[int]]])
slots.has_member = Slot(uri=LINKML.has_member, name="has_member", curie=LINKML.curie('has_member'),
model_uri=LINKML.has_member, domain=None, range=Optional[Union[dict, AnonymousSlotExpression]])
slots.all_members = Slot(uri=LINKML.all_members, name="all_members", curie=LINKML.curie('all_members'),
model_uri=LINKML.all_members, domain=None, range=Optional[Union[dict, AnonymousSlotExpression]])
slots.singular_name = Slot(uri=LINKML.singular_name, name="singular_name", curie=LINKML.curie('singular_name'),
model_uri=LINKML.singular_name, domain=SlotDefinition, range=Optional[str])
slots.required = Slot(uri=LINKML.required, name="required", curie=LINKML.curie('required'),
model_uri=LINKML.required, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.recommended = Slot(uri=LINKML.recommended, name="recommended", curie=LINKML.curie('recommended'),
model_uri=LINKML.recommended, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.inapplicable = Slot(uri=LINKML.inapplicable, name="inapplicable", curie=LINKML.curie('inapplicable'),
model_uri=LINKML.inapplicable, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.inlined = Slot(uri=LINKML.inlined, name="inlined", curie=LINKML.curie('inlined'),
model_uri=LINKML.inlined, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.inlined_as_list = Slot(uri=LINKML.inlined_as_list, name="inlined_as_list", curie=LINKML.curie('inlined_as_list'),
model_uri=LINKML.inlined_as_list, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.inlined_as_simple_dict = Slot(uri=LINKML.inlined_as_simple_dict, name="inlined_as_simple_dict", curie=LINKML.curie('inlined_as_simple_dict'),
model_uri=LINKML.inlined_as_simple_dict, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.list_elements_ordered = Slot(uri=LINKML.list_elements_ordered, name="list_elements_ordered", curie=LINKML.curie('list_elements_ordered'),
model_uri=LINKML.list_elements_ordered, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.list_elements_unique = Slot(uri=LINKML.list_elements_unique, name="list_elements_unique", curie=LINKML.curie('list_elements_unique'),
model_uri=LINKML.list_elements_unique, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.shared = Slot(uri=LINKML.shared, name="shared", curie=LINKML.curie('shared'),
model_uri=LINKML.shared, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.key = Slot(uri=LINKML.key, name="key", curie=LINKML.curie('key'),
model_uri=LINKML.key, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.identifier = Slot(uri=LINKML.identifier, name="identifier", curie=LINKML.curie('identifier'),
model_uri=LINKML.identifier, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.designates_type = Slot(uri=LINKML.designates_type, name="designates_type", curie=LINKML.curie('designates_type'),
model_uri=LINKML.designates_type, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.alias = Slot(uri=SKOS.prefLabel, name="alias", curie=SKOS.curie('prefLabel'),
model_uri=LINKML.alias, domain=SlotDefinition, range=Optional[str])
slots.owner = Slot(uri=LINKML.owner, name="owner", curie=LINKML.curie('owner'),
model_uri=LINKML.owner, domain=SlotDefinition, range=Optional[Union[str, DefinitionName]])
slots.domain_of = Slot(uri=LINKML.domain_of, name="domain_of", curie=LINKML.curie('domain_of'),
model_uri=LINKML.domain_of, domain=SlotDefinition, range=Optional[Union[Union[str, ClassDefinitionName], list[Union[str, ClassDefinitionName]]]])
slots.is_usage_slot = Slot(uri=LINKML.is_usage_slot, name="is_usage_slot", curie=LINKML.curie('is_usage_slot'),
model_uri=LINKML.is_usage_slot, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.usage_slot_name = Slot(uri=LINKML.usage_slot_name, name="usage_slot_name", curie=LINKML.curie('usage_slot_name'),
model_uri=LINKML.usage_slot_name, domain=SlotDefinition, range=Optional[str])
slots.subproperty_of = Slot(uri=RDFS.subPropertyOf, name="subproperty_of", curie=RDFS.curie('subPropertyOf'),
model_uri=LINKML.subproperty_of, domain=SlotDefinition, range=Optional[Union[str, SlotDefinitionName]])
slots.disjoint_with = Slot(uri=LINKML.disjoint_with, name="disjoint_with", curie=LINKML.curie('disjoint_with'),
model_uri=LINKML.disjoint_with, domain=Definition, range=Optional[Union[Union[str, DefinitionName], list[Union[str, DefinitionName]]]])
slots.children_are_mutually_disjoint = Slot(uri=LINKML.children_are_mutually_disjoint, name="children_are_mutually_disjoint", curie=LINKML.curie('children_are_mutually_disjoint'),
model_uri=LINKML.children_are_mutually_disjoint, domain=Definition, range=Optional[Union[bool, Bool]])
slots.relational_logical_characteristic = Slot(uri=LINKML.relational_logical_characteristic, name="relational_logical_characteristic", curie=LINKML.curie('relational_logical_characteristic'),
model_uri=LINKML.relational_logical_characteristic, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.symmetric = Slot(uri=LINKML.symmetric, name="symmetric", curie=LINKML.curie('symmetric'),
model_uri=LINKML.symmetric, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.asymmetric = Slot(uri=LINKML.asymmetric, name="asymmetric", curie=LINKML.curie('asymmetric'),
model_uri=LINKML.asymmetric, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.reflexive = Slot(uri=LINKML.reflexive, name="reflexive", curie=LINKML.curie('reflexive'),
model_uri=LINKML.reflexive, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.irreflexive = Slot(uri=LINKML.irreflexive, name="irreflexive", curie=LINKML.curie('irreflexive'),
model_uri=LINKML.irreflexive, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.locally_reflexive = Slot(uri=LINKML.locally_reflexive, name="locally_reflexive", curie=LINKML.curie('locally_reflexive'),
model_uri=LINKML.locally_reflexive, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.transitive = Slot(uri=LINKML.transitive, name="transitive", curie=LINKML.curie('transitive'),
model_uri=LINKML.transitive, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.transitive_form_of = Slot(uri=LINKML.transitive_form_of, name="transitive_form_of", curie=LINKML.curie('transitive_form_of'),
model_uri=LINKML.transitive_form_of, domain=None, range=Optional[Union[str, SlotDefinitionName]])
slots.reflexive_transitive_form_of = Slot(uri=LINKML.reflexive_transitive_form_of, name="reflexive_transitive_form_of", curie=LINKML.curie('reflexive_transitive_form_of'),
model_uri=LINKML.reflexive_transitive_form_of, domain=None, range=Optional[Union[str, SlotDefinitionName]])
slots.inverse = Slot(uri=OWL.inverseOf, name="inverse", curie=OWL.curie('inverseOf'),
model_uri=LINKML.inverse, domain=SlotDefinition, range=Optional[Union[str, SlotDefinitionName]])
slots.is_class_field = Slot(uri=LINKML.is_class_field, name="is_class_field", curie=LINKML.curie('is_class_field'),
model_uri=LINKML.is_class_field, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.role = Slot(uri=LINKML.role, name="role", curie=LINKML.curie('role'),
model_uri=LINKML.role, domain=SlotDefinition, range=Optional[str])
slots.minimum_value = Slot(uri=LINKML.minimum_value, name="minimum_value", curie=LINKML.curie('minimum_value'),
model_uri=LINKML.minimum_value, domain=SlotDefinition, range=Optional[Union[dict, Anything]])
slots.maximum_value = Slot(uri=LINKML.maximum_value, name="maximum_value", curie=LINKML.curie('maximum_value'),
model_uri=LINKML.maximum_value, domain=SlotDefinition, range=Optional[Union[dict, Anything]])
slots.interpolated = Slot(uri=LINKML.interpolated, name="interpolated", curie=LINKML.curie('interpolated'),
model_uri=LINKML.interpolated, domain=PatternExpression, range=Optional[Union[bool, Bool]])
slots.partial_match = Slot(uri=LINKML.partial_match, name="partial_match", curie=LINKML.curie('partial_match'),
model_uri=LINKML.partial_match, domain=PatternExpression, range=Optional[Union[bool, Bool]])
slots.pattern = Slot(uri=LINKML.pattern, name="pattern", curie=LINKML.curie('pattern'),
model_uri=LINKML.pattern, domain=Definition, range=Optional[str])
slots.syntax = Slot(uri=LINKML.syntax, name="syntax", curie=LINKML.curie('syntax'),
model_uri=LINKML.syntax, domain=PatternExpression, range=Optional[str])
slots.structured_pattern = Slot(uri=LINKML.structured_pattern, name="structured_pattern", curie=LINKML.curie('structured_pattern'),
model_uri=LINKML.structured_pattern, domain=Definition, range=Optional[Union[dict, "PatternExpression"]])
slots.string_serialization = Slot(uri=LINKML.string_serialization, name="string_serialization", curie=LINKML.curie('string_serialization'),
model_uri=LINKML.string_serialization, domain=Definition, range=Optional[str])
slots.bindings = Slot(uri=LINKML.bindings, name="bindings", curie=LINKML.curie('bindings'),
model_uri=LINKML.bindings, domain=Element, range=Optional[Union[Union[dict, "EnumBinding"], list[Union[dict, "EnumBinding"]]]])
slots.binds_value_of = Slot(uri=LINKML.binds_value_of, name="binds_value_of", curie=LINKML.curie('binds_value_of'),
model_uri=LINKML.binds_value_of, domain=EnumBinding, range=Optional[str])
slots.obligation_level = Slot(uri=LINKML.obligation_level, name="obligation_level", curie=LINKML.curie('obligation_level'),
model_uri=LINKML.obligation_level, domain=None, range=Optional[Union[str, "ObligationLevelEnum"]])
slots.type_mappings = Slot(uri=LINKML.type_mappings, name="type_mappings", curie=LINKML.curie('type_mappings'),
model_uri=LINKML.type_mappings, domain=None, range=Optional[Union[Union[str, TypeMappingFramework], list[Union[str, TypeMappingFramework]]]])
slots.framework_key = Slot(uri=LINKML.framework, name="framework_key", curie=LINKML.curie('framework'),
model_uri=LINKML.framework_key, domain=None, range=URIRef)
slots.mapped_type = Slot(uri=LINKML.type, name="mapped_type", curie=LINKML.curie('type'),
model_uri=LINKML.mapped_type, domain=None, range=Optional[Union[str, TypeDefinitionName]])
slots.typeof = Slot(uri=LINKML.typeof, name="typeof", curie=LINKML.curie('typeof'),
model_uri=LINKML.typeof, domain=TypeDefinition, range=Optional[Union[str, TypeDefinitionName]])
slots.base = Slot(uri=LINKML.base, name="base", curie=LINKML.curie('base'),
model_uri=LINKML.base, domain=TypeDefinition, range=Optional[str])
slots.type_uri = Slot(uri=LINKML.uri, name="type_uri", curie=LINKML.curie('uri'),
model_uri=LINKML.type_uri, domain=TypeDefinition, range=Optional[Union[str, URIorCURIE]])
slots.repr = Slot(uri=LINKML.repr, name="repr", curie=LINKML.curie('repr'),
model_uri=LINKML.repr, domain=TypeDefinition, range=Optional[str])
slots.alt_description_text = Slot(uri=LINKML.description, name="alt_description_text", curie=LINKML.curie('description'),
model_uri=LINKML.alt_description_text, domain=AltDescription, range=str)
slots.alt_description_source = Slot(uri=LINKML.source, name="alt_description_source", curie=LINKML.curie('source'),
model_uri=LINKML.alt_description_source, domain=AltDescription, range=Union[str, AltDescriptionSource])
slots.alt_descriptions = Slot(uri=LINKML.alt_descriptions, name="alt_descriptions", curie=LINKML.curie('alt_descriptions'),
model_uri=LINKML.alt_descriptions, domain=Element, range=Optional[Union[dict[Union[str, AltDescriptionSource], Union[dict, "AltDescription"]], list[Union[dict, "AltDescription"]]]])
slots.value = Slot(uri=SKOS.example, name="value", curie=SKOS.curie('example'),
model_uri=LINKML.value, domain=Example, range=Optional[str])
slots.value_description = Slot(uri=LINKML.description, name="value_description", curie=LINKML.curie('description'),
model_uri=LINKML.value_description, domain=Example, range=Optional[str])
slots.value_object = Slot(uri=LINKML.object, name="value_object", curie=LINKML.curie('object'),
model_uri=LINKML.value_object, domain=Example, range=Optional[Union[dict, Anything]])
slots.examples = Slot(uri=LINKML.examples, name="examples", curie=LINKML.curie('examples'),
model_uri=LINKML.examples, domain=Element, range=Optional[Union[Union[dict, "Example"], list[Union[dict, "Example"]]]])
slots.prefix_prefix = Slot(uri=SH.prefix, name="prefix_prefix", curie=SH.curie('prefix'),
model_uri=LINKML.prefix_prefix, domain=Prefix, range=Union[str, PrefixPrefixPrefix])
slots.prefix_reference = Slot(uri=SH.namespace, name="prefix_reference", curie=SH.curie('namespace'),
model_uri=LINKML.prefix_reference, domain=Prefix, range=Union[str, URI])
slots.prefixes = Slot(uri=SH.declare, name="prefixes", curie=SH.curie('declare'),
model_uri=LINKML.prefixes, domain=SchemaDefinition, range=Optional[Union[dict[Union[str, PrefixPrefixPrefix], Union[dict, "Prefix"]], list[Union[dict, "Prefix"]]]])
slots.setting_key = Slot(uri=LINKML.setting_key, name="setting_key", curie=LINKML.curie('setting_key'),
model_uri=LINKML.setting_key, domain=Setting, range=Union[str, SettingSettingKey])
slots.setting_value = Slot(uri=LINKML.setting_value, name="setting_value", curie=LINKML.curie('setting_value'),
model_uri=LINKML.setting_value, domain=Setting, range=str)
slots.settings = Slot(uri=LINKML.settings, name="settings", curie=LINKML.curie('settings'),
model_uri=LINKML.settings, domain=SchemaDefinition, range=Optional[Union[dict[Union[str, SettingSettingKey], Union[dict, "Setting"]], list[Union[dict, "Setting"]]]])
slots.import_from = Slot(uri=LINKML.import_from, name="import_from", curie=LINKML.curie('import_from'),
model_uri=LINKML.import_from, domain=ImportExpression, range=Union[str, URIorCURIE])
slots.import_as = Slot(uri=LINKML.import_as, name="import_as", curie=LINKML.curie('import_as'),
model_uri=LINKML.import_as, domain=ImportExpression, range=Optional[Union[str, NCName]])
slots.import_map = Slot(uri=LINKML.import_map, name="import_map", curie=LINKML.curie('import_map'),
model_uri=LINKML.import_map, domain=ImportExpression, range=Optional[Union[dict[Union[str, SettingSettingKey], Union[dict, "Setting"]], list[Union[dict, "Setting"]]]])
slots.local_name_source = Slot(uri=LINKML.local_name_source, name="local_name_source", curie=LINKML.curie('local_name_source'),
model_uri=LINKML.local_name_source, domain=LocalName, range=Union[str, LocalNameLocalNameSource])
slots.local_name_value = Slot(uri=SKOS.altLabel, name="local_name_value", curie=SKOS.curie('altLabel'),
model_uri=LINKML.local_name_value, domain=LocalName, range=str)
slots.local_names = Slot(uri=LINKML.local_names, name="local_names", curie=LINKML.curie('local_names'),
model_uri=LINKML.local_names, domain=Element, range=Optional[Union[dict[Union[str, LocalNameLocalNameSource], Union[dict, "LocalName"]], list[Union[dict, "LocalName"]]]])
slots.slot_group = Slot(uri=SH.group, name="slot_group", curie=SH.curie('group'),
model_uri=LINKML.slot_group, domain=SlotDefinition, range=Optional[Union[str, SlotDefinitionName]])
slots.is_grouping_slot = Slot(uri=LINKML.is_grouping_slot, name="is_grouping_slot", curie=LINKML.curie('is_grouping_slot'),
model_uri=LINKML.is_grouping_slot, domain=SlotDefinition, range=Optional[Union[bool, Bool]])
slots.followed_by = Slot(uri=LINKML.followed_by, name="followed_by", curie=LINKML.curie('followed_by'),
model_uri=LINKML.followed_by, domain=None, range=Optional[Union[dict, Expression]])
slots.reversed = Slot(uri=LINKML.reversed, name="reversed", curie=LINKML.curie('reversed'),
model_uri=LINKML.reversed, domain=None, range=Optional[Union[bool, Bool]])
slots.traverse = Slot(uri=LINKML.traverse, name="traverse", curie=LINKML.curie('traverse'),
model_uri=LINKML.traverse, domain=None, range=Optional[Union[str, SlotDefinitionName]])
slots.path_rule = Slot(uri=LINKML.path_rule, name="path_rule", curie=LINKML.curie('path_rule'),
model_uri=LINKML.path_rule, domain=SlotDefinition, range=Optional[Union[dict, PathExpression]])
slots.represents_relationship = Slot(uri=LINKML.represents_relationship, name="represents_relationship", curie=LINKML.curie('represents_relationship'),
model_uri=LINKML.represents_relationship, domain=ClassDefinition, range=Optional[Union[bool, Bool]])
slots.relational_role = Slot(uri=LINKML.relational_role, name="relational_role", curie=LINKML.curie('relational_role'),
model_uri=LINKML.relational_role, domain=SlotDefinition, range=Optional[Union[str, "RelationalRoleEnum"]])
slots.schema_definition_name = Slot(uri=RDFS.label, name="schema_definition_name", curie=RDFS.curie('label'),
model_uri=LINKML.schema_definition_name, domain=SchemaDefinition, range=Union[str, SchemaDefinitionName])
slots.type_expression_any_of = Slot(uri=LINKML.any_of, name="type_expression_any_of", curie=LINKML.curie('any_of'),
model_uri=LINKML.type_expression_any_of, domain=None, range=Optional[Union[Union[dict, "AnonymousTypeExpression"], list[Union[dict, "AnonymousTypeExpression"]]]])
slots.type_expression_all_of = Slot(uri=LINKML.all_of, name="type_expression_all_of", curie=LINKML.curie('all_of'),
model_uri=LINKML.type_expression_all_of, domain=None, range=Optional[Union[Union[dict, "AnonymousTypeExpression"], list[Union[dict, "AnonymousTypeExpression"]]]])
slots.type_expression_exactly_one_of = Slot(uri=LINKML.exactly_one_of, name="type_expression_exactly_one_of", curie=LINKML.curie('exactly_one_of'),
model_uri=LINKML.type_expression_exactly_one_of, domain=None, range=Optional[Union[Union[dict, "AnonymousTypeExpression"], list[Union[dict, "AnonymousTypeExpression"]]]])
slots.type_expression_none_of = Slot(uri=LINKML.none_of, name="type_expression_none_of", curie=LINKML.curie('none_of'),
model_uri=LINKML.type_expression_none_of, domain=None, range=Optional[Union[Union[dict, "AnonymousTypeExpression"], list[Union[dict, "AnonymousTypeExpression"]]]])
slots.type_definition_union_of = Slot(uri=LINKML.union_of, name="type_definition_union_of", curie=LINKML.curie('union_of'),
model_uri=LINKML.type_definition_union_of, domain=TypeDefinition, range=Optional[Union[Union[str, TypeDefinitionName], list[Union[str, TypeDefinitionName]]]])
slots.enum_binding_range = Slot(uri=LINKML.range, name="enum_binding_range", curie=LINKML.curie('range'),
model_uri=LINKML.enum_binding_range, domain=EnumBinding, range=Optional[Union[str, EnumDefinitionName]])
slots.structured_alias_categories = Slot(uri=DCTERMS.subject, name="structured_alias_categories", curie=DCTERMS.curie('subject'),
model_uri=LINKML.structured_alias_categories, domain=StructuredAlias, range=Optional[Union[Union[str, URIorCURIE], list[Union[str, URIorCURIE]]]])
slots.path_expression_followed_by = Slot(uri=LINKML.followed_by, name="path_expression_followed_by", curie=LINKML.curie('followed_by'),
model_uri=LINKML.path_expression_followed_by, domain=PathExpression, range=Optional[Union[dict, "PathExpression"]])
slots.path_expression_any_of = Slot(uri=LINKML.any_of, name="path_expression_any_of", curie=LINKML.curie('any_of'),
model_uri=LINKML.path_expression_any_of, domain=PathExpression, range=Optional[Union[Union[dict, "PathExpression"], list[Union[dict, "PathExpression"]]]])
slots.path_expression_exactly_one_of = Slot(uri=LINKML.exactly_one_of, name="path_expression_exactly_one_of", curie=LINKML.curie('exactly_one_of'),
model_uri=LINKML.path_expression_exactly_one_of, domain=PathExpression, range=Optional[Union[Union[dict, "PathExpression"], list[Union[dict, "PathExpression"]]]])
slots.path_expression_none_of = Slot(uri=LINKML.none_of, name="path_expression_none_of", curie=LINKML.curie('none_of'),
model_uri=LINKML.path_expression_none_of, domain=PathExpression, range=Optional[Union[Union[dict, "PathExpression"], list[Union[dict, "PathExpression"]]]])
slots.path_expression_all_of = Slot(uri=LINKML.all_of, name="path_expression_all_of", curie=LINKML.curie('all_of'),
model_uri=LINKML.path_expression_all_of, domain=PathExpression, range=Optional[Union[Union[dict, "PathExpression"], list[Union[dict, "PathExpression"]]]])
slots.slot_expression_any_of = Slot(uri=LINKML.any_of, name="slot_expression_any_of", curie=LINKML.curie('any_of'),
model_uri=LINKML.slot_expression_any_of, domain=None, range=Optional[Union[Union[dict, "AnonymousSlotExpression"], list[Union[dict, "AnonymousSlotExpression"]]]])
slots.slot_expression_all_of = Slot(uri=LINKML.all_of, name="slot_expression_all_of", curie=LINKML.curie('all_of'),
model_uri=LINKML.slot_expression_all_of, domain=None, range=Optional[Union[Union[dict, "AnonymousSlotExpression"], list[Union[dict, "AnonymousSlotExpression"]]]])
slots.slot_expression_exactly_one_of = Slot(uri=LINKML.exactly_one_of, name="slot_expression_exactly_one_of", curie=LINKML.curie('exactly_one_of'),
model_uri=LINKML.slot_expression_exactly_one_of, domain=None, range=Optional[Union[Union[dict, "AnonymousSlotExpression"], list[Union[dict, "AnonymousSlotExpression"]]]])
slots.slot_expression_none_of = Slot(uri=LINKML.none_of, name="slot_expression_none_of", curie=LINKML.curie('none_of'),
model_uri=LINKML.slot_expression_none_of, domain=None, range=Optional[Union[Union[dict, "AnonymousSlotExpression"], list[Union[dict, "AnonymousSlotExpression"]]]])
slots.slot_definition_is_a = Slot(uri=LINKML.is_a, name="slot_definition_is_a", curie=LINKML.curie('is_a'),
model_uri=LINKML.slot_definition_is_a, domain=SlotDefinition, range=Optional[Union[str, SlotDefinitionName]])
slots.slot_definition_mixins = Slot(uri=LINKML.mixins, name="slot_definition_mixins", curie=LINKML.curie('mixins'),
model_uri=LINKML.slot_definition_mixins, domain=SlotDefinition, range=Optional[Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]]])
slots.slot_definition_apply_to = Slot(uri=LINKML.apply_to, name="slot_definition_apply_to", curie=LINKML.curie('apply_to'),
model_uri=LINKML.slot_definition_apply_to, domain=SlotDefinition, range=Optional[Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]]])
slots.slot_definition_disjoint_with = Slot(uri=LINKML.disjoint_with, name="slot_definition_disjoint_with", curie=LINKML.curie('disjoint_with'),
model_uri=LINKML.slot_definition_disjoint_with, domain=SlotDefinition, range=Optional[Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]]])
slots.slot_definition_union_of = Slot(uri=LINKML.union_of, name="slot_definition_union_of", curie=LINKML.curie('union_of'),
model_uri=LINKML.slot_definition_union_of, domain=SlotDefinition, range=Optional[Union[Union[str, SlotDefinitionName], list[Union[str, SlotDefinitionName]]]])
slots.class_expression_any_of = Slot(uri=LINKML.any_of, name="class_expression_any_of", curie=LINKML.curie('any_of'),
model_uri=LINKML.class_expression_any_of, domain=None, range=Optional[Union[Union[dict, "AnonymousClassExpression"], list[Union[dict, "AnonymousClassExpression"]]]])
slots.class_expression_all_of = Slot(uri=LINKML.all_of, name="class_expression_all_of", curie=LINKML.curie('all_of'),
model_uri=LINKML.class_expression_all_of, domain=None, range=Optional[Union[Union[dict, "AnonymousClassExpression"], list[Union[dict, "AnonymousClassExpression"]]]])
slots.class_expression_exactly_one_of = Slot(uri=LINKML.exactly_one_of, name="class_expression_exactly_one_of", curie=LINKML.curie('exactly_one_of'),
model_uri=LINKML.class_expression_exactly_one_of, domain=None, range=Optional[Union[Union[dict, "AnonymousClassExpression"], list[Union[dict, "AnonymousClassExpression"]]]])
slots.class_expression_none_of = Slot(uri=LINKML.none_of, name="class_expression_none_of", curie=LINKML.curie('none_of'),
model_uri=LINKML.class_expression_none_of, domain=None, range=Optional[Union[Union[dict, "AnonymousClassExpression"], list[Union[dict, "AnonymousClassExpression"]]]])
slots.class_definition_is_a = Slot(uri=LINKML.is_a, name="class_definition_is_a", curie=LINKML.curie('is_a'),
model_uri=LINKML.class_definition_is_a, domain=ClassDefinition, range=Optional[Union[str, ClassDefinitionName]])
slots.class_definition_mixins = Slot(uri=LINKML.mixins, name="class_definition_mixins", curie=LINKML.curie('mixins'),
model_uri=LINKML.class_definition_mixins, domain=ClassDefinition, range=Optional[Union[Union[str, ClassDefinitionName], list[Union[str, ClassDefinitionName]]]])
slots.class_definition_apply_to = Slot(uri=LINKML.apply_to, name="class_definition_apply_to", curie=LINKML.curie('apply_to'),
model_uri=LINKML.class_definition_apply_to, domain=ClassDefinition, range=Optional[Union[Union[str, ClassDefinitionName], list[Union[str, ClassDefinitionName]]]])
slots.class_definition_rules = Slot(uri=SH.rule, name="class_definition_rules", curie=SH.curie('rule'),
model_uri=LINKML.class_definition_rules, domain=ClassDefinition, range=Optional[Union[Union[dict, "ClassRule"], list[Union[dict, "ClassRule"]]]])
slots.class_definition_disjoint_with = Slot(uri=LINKML.disjoint_with, name="class_definition_disjoint_with", curie=LINKML.curie('disjoint_with'),
model_uri=LINKML.class_definition_disjoint_with, domain=ClassDefinition, range=Optional[Union[Union[str, ClassDefinitionName], list[Union[str, ClassDefinitionName]]]])
slots.class_definition_union_of = Slot(uri=LINKML.union_of, name="class_definition_union_of", curie=LINKML.curie('union_of'),
model_uri=LINKML.class_definition_union_of, domain=ClassDefinition, range=Optional[Union[Union[str, ClassDefinitionName], list[Union[str, ClassDefinitionName]]]])
slots.permissible_value_is_a = Slot(uri=LINKML.is_a, name="permissible_value_is_a", curie=LINKML.curie('is_a'),
model_uri=LINKML.permissible_value_is_a, domain=PermissibleValue, range=Optional[Union[str, PermissibleValueText]])
slots.permissible_value_mixins = Slot(uri=LINKML.mixins, name="permissible_value_mixins", curie=LINKML.curie('mixins'),
model_uri=LINKML.permissible_value_mixins, domain=PermissibleValue, range=Optional[Union[Union[str, PermissibleValueText], list[Union[str, PermissibleValueText]]]])